One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_7nt_m19_shift0 ; 46 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_7nt_m19_shift0 (positions_7nt_m19positions_7nt_m19)     
; positions_7nt_m19 (positions_7nt_m19positions_7nt_m19); m=0 (reference); ncol1=14; shift=0; ncol=17; ystgCACCTGTcmy---
; Alignment reference
a	875	956	816	685	21	4973	40	55	7	9	38	117	1409	675	0	0	0
c	1718	1679	858	897	5037	40	4348	4933	17	44	80	3404	1767	2045	0	0	0
g	1210	1396	1004	3195	28	44	547	89	27	5036	43	708	812	1024	0	0	0
t	1304	1076	2429	330	21	50	172	30	5056	18	4946	878	1119	1363	0	0	0
MA0499.2_shift1 (MYOD1) 
; positions_7nt_m19 versus MA0499.2 (MYOD1); m=1/45; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.918349; -cwgCACCTGTymy---
; cor=; Ncor=
a	0	7175.0	9462.0	4549.0	349.0	32281.0	463.0	534.0	241.0	208.0	402.0	1808.0	9462.0	5687.0	0	0	0
c	0	11279.0	7103.0	5622.0	33328.0	583.0	25275.0	32504.0	563.0	386.0	2555.0	19052.0	10485.0	11760.0	0	0	0
g	0	8118.0	8444.0	21884.0	354.0	849.0	7336.0	932.0	366.0	33468.0	1699.0	4440.0	6202.0	7495.0	0	0	0
t	0	7728.0	9291.0	2245.0	269.0	587.0	1226.0	330.0	33130.0	238.0	29644.0	9000.0	8151.0	9358.0	0	0	0
MA0745.2_shift1 (SNAI2) 
; positions_7nt_m19 versus MA0745.2 (SNAI2); m=2/45; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.900954; -aygCACCTGTmry---
; cor=; Ncor=
a	0	14658.0	7668.0	10322.0	408.0	44963.0	112.0	246.0	78.0	179.0	814.0	12017.0	13586.0	6215.0	0	0	0
c	0	10031.0	12314.0	6393.0	44463.0	202.0	45144.0	44739.0	313.0	254.0	6467.0	18771.0	11016.0	13476.0	0	0	0
g	0	11169.0	9490.0	26742.0	323.0	424.0	326.0	487.0	196.0	45257.0	1263.0	6281.0	12297.0	8219.0	0	0	0
t	0	9958.0	16344.0	2359.0	622.0	227.0	234.0	344.0	45229.0	126.0	37272.0	8747.0	8917.0	17906.0	0	0	0
MA1621.1_shift0 (Rbpjl) 
; positions_7nt_m19 versus MA1621.1 (Rbpjl); m=3/45; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.899281; svmaCACCTGtsyc---
; cor=; Ncor=
a	2006.0	2466.0	3369.0	6005.0	139.0	9386.0	84.0	234.0	63.0	102.0	569.0	1539.0	2273.0	2082.0	0	0	0
c	2881.0	2427.0	3117.0	1373.0	9273.0	70.0	8533.0	9005.0	144.0	131.0	1718.0	3247.0	2884.0	3003.0	0	0	0
g	2476.0	2549.0	1802.0	1492.0	103.0	110.0	672.0	317.0	132.0	9295.0	1581.0	2687.0	1958.0	2281.0	0	0	0
t	2289.0	2210.0	1364.0	782.0	137.0	86.0	363.0	96.0	9313.0	124.0	5784.0	2179.0	2537.0	2286.0	0	0	0
MA0830.2_shift1 (TCF4) 
; positions_7nt_m19 versus MA0830.2 (TCF4); m=4/45; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.802672; -cggCACCTGccss---
; cor=; Ncor=
a	0	6048.0	7034.0	4168.0	243.0	27023.0	216.0	356.0	372.0	251.0	1694.0	5534.0	6413.0	5133.0	0	0	0
c	0	10052.0	6754.0	5062.0	28686.0	635.0	26765.0	27724.0	1016.0	540.0	18935.0	12872.0	8658.0	9843.0	0	0	0
g	0	7140.0	8618.0	18498.0	321.0	1295.0	1733.0	1197.0	679.0	28432.0	5281.0	4933.0	7964.0	7662.0	0	0	0
t	0	6225.0	7059.0	1737.0	215.0	512.0	751.0	188.0	27398.0	242.0	3555.0	6126.0	6430.0	6827.0	0	0	0
MA1631.1_shift1 (ASCL1(var.2)) 
; positions_7nt_m19 versus MA1631.1 (ASCL1(var.2)); m=5/45; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.777386; -cdgCACCTGCysc---
; cor=; Ncor=
a	0	6833.0	8952.0	5836.0	184.0	32315.0	163.0	196.0	368.0	251.0	399.0	4490.0	7083.0	5972.0	0	0	0
c	0	11805.0	7998.0	6654.0	33562.0	563.0	30169.0	33402.0	740.0	445.0	28844.0	17883.0	10555.0	11996.0	0	0	0
g	0	8371.0	8601.0	18576.0	321.0	860.0	3209.0	607.0	492.0	33411.0	2719.0	2966.0	8939.0	8356.0	0	0	0
t	0	7347.0	8805.0	3290.0	289.0	618.0	815.0	151.0	32756.0	249.0	2394.0	9017.0	7779.0	8032.0	0	0	0
MA1620.1_shift1 (Ptf1a(var.3)) 
; positions_7nt_m19 versus MA1620.1 (Ptf1a(var.3)); m=6/45; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.763163; -rmaCACCTGtky----
; cor=; Ncor=
a	0	2834.0	2613.0	6867.0	184.0	10033.0	116.0	256.0	85.0	68.0	527.0	1678.0	2293.0	0	0	0	0
c	0	2469.0	3700.0	1188.0	9887.0	60.0	8567.0	9612.0	94.0	109.0	1615.0	2527.0	3004.0	0	0	0	0
g	0	2664.0	2379.0	1410.0	113.0	84.0	1182.0	294.0	98.0	9972.0	1516.0	3341.0	2183.0	0	0	0	0
t	0	2324.0	1599.0	826.0	107.0	114.0	426.0	129.0	10014.0	142.0	6633.0	2745.0	2811.0	0	0	0	0
MA1618.1_rc_shift0 (Ptf1a_rc) 
; positions_7nt_m19 versus MA1618.1_rc (Ptf1a_rc); m=7/45; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.683173; dmaaCATCTGtkh----
; cor=; Ncor=
a	3622.0	3685.0	8294.0	8564.0	210.0	13973.0	148.0	653.0	106.0	172.0	726.0	2735.0	3699.0	0	0	0	0
c	3376.0	3664.0	2295.0	2854.0	13868.0	118.0	437.0	13072.0	153.0	130.0	2414.0	3568.0	3661.0	0	0	0	0
g	3689.0	3601.0	2341.0	2058.0	122.0	224.0	1724.0	466.0	118.0	14006.0	2747.0	3662.0	2989.0	0	0	0	0
t	3754.0	3491.0	1511.0	965.0	241.0	126.0	12132.0	250.0	14064.0	133.0	8554.0	4476.0	4092.0	0	0	0	0
MA1109.1_rc_shift0 (NEUROD1_rc) 
; positions_7nt_m19 versus MA1109.1_rc (NEUROD1_rc); m=8/45; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.67492; syrCCATCTGtyc----
; cor=; Ncor=
a	525.0	451.0	580.0	168.0	31.0	2157.0	21.0	90.0	18.0	12.0	47.0	298.0	566.0	0	0	0	0
c	628.0	599.0	418.0	1962.0	2231.0	19.0	77.0	2152.0	16.0	13.0	494.0	906.0	726.0	0	0	0	0
g	591.0	540.0	911.0	93.0	7.0	51.0	150.0	24.0	7.0	2240.0	452.0	323.0	429.0	0	0	0	0
t	538.0	692.0	373.0	59.0	13.0	55.0	2034.0	16.0	2241.0	17.0	1289.0	755.0	561.0	0	0	0	0
MA0521.1_rc_shift1 (Tcf12_rc) 
; positions_7nt_m19 versus MA0521.1_rc (Tcf12_rc); m=9/45; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.670429; -cwsCAGCTGYy-----
; cor=; Ncor=
a	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0	0	0	0
c	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0	0	0	0
g	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0	0	0	0
t	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0	0	0	0
MA1559.1_rc_shift2 (SNAI3_rc) 
; positions_7nt_m19 versus MA1559.1_rc (SNAI3_rc); m=10/45; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.669279; --trCACCTGyt-----
; cor=; Ncor=
a	0	0	553.0	3161.0	30.0	6248.0	0.0	43.0	3.0	35.0	183.0	1110.0	0	0	0	0	0
c	0	0	1569.0	1701.0	6248.0	28.0	6248.0	6248.0	34.0	0.0	2331.0	1525.0	0	0	0	0	0
g	0	0	688.0	6248.0	0.0	12.0	18.0	29.0	0.0	6248.0	0.0	661.0	0	0	0	0	0
t	0	0	4680.0	432.0	94.0	0.0	0.0	118.0	6248.0	23.0	3917.0	2952.0	0	0	0	0	0
MA0103.3_shift2 (ZEB1) 
; positions_7nt_m19 versus MA0103.3 (ZEB1); m=11/45; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.66464; --ssCACCTGsss----
; cor=; Ncor=
a	0	0	3211.0	4685.0	114.0	19905.0	32.0	193.0	4.0	441.0	1982.0	4258.0	3490.0	0	0	0	0
c	0	0	7998.0	5550.0	19195.0	0.0	19878.0	19257.0	501.0	178.0	9561.0	6117.0	6955.0	0	0	0	0
g	0	0	5228.0	5179.0	158.0	223.0	97.0	649.0	355.0	19381.0	5178.0	6601.0	5828.0	0	0	0	0
t	0	0	3692.0	4715.0	662.0	1.0	122.0	30.0	19269.0	129.0	3408.0	3153.0	3856.0	0	0	0	0
MA1642.1_rc_shift1 (NEUROG2(var.2)_rc) 
; positions_7nt_m19 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=12/45; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.662618; -brCCATCTGtyyy---
; cor=; Ncor=
a	0	7184.0	9704.0	4904.0	484.0	32515.0	275.0	2806.0	159.0	237.0	1750.0	4721.0	8378.0	7535.0	0	0	0
c	0	8709.0	7581.0	24998.0	33422.0	323.0	418.0	30392.0	301.0	317.0	8039.0	11114.0	10123.0	10813.0	0	0	0
g	0	9034.0	10441.0	2966.0	205.0	904.0	952.0	793.0	211.0	33559.0	8154.0	6467.0	6843.0	7353.0	0	0	0
t	0	9464.0	6665.0	1523.0	280.0	649.0	32746.0	400.0	33720.0	278.0	16448.0	12089.0	9047.0	8690.0	0	0	0
MA1619.1_shift1 (Ptf1a(var.2)) 
; positions_7nt_m19 versus MA1619.1 (Ptf1a(var.2)); m=13/45; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.65177; -rmaCAGCTGtky----
; cor=; Ncor=
a	0	1869.0	1978.0	4346.0	49.0	7119.0	34.0	224.0	26.0	27.0	535.0	1221.0	1602.0	0	0	0	0
c	0	1803.0	2430.0	1070.0	7149.0	41.0	307.0	6697.0	66.0	27.0	1312.0	1632.0	1977.0	0	0	0	0
g	0	1974.0	1629.0	1308.0	28.0	65.0	6689.0	299.0	40.0	7150.0	1065.0	2426.0	1803.0	0	0	0	0
t	0	1607.0	1216.0	529.0	27.0	28.0	223.0	33.0	7121.0	49.0	4341.0	1974.0	1871.0	0	0	0	0
MA1641.1_rc_shift1 (MYF5_rc) 
; positions_7nt_m19 versus MA1641.1_rc (MYF5_rc); m=14/45; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.649945; -gvaCAGCTGtbc----
; cor=; Ncor=
a	0	2697.0	3507.0	7489.0	95.0	10966.0	100.0	222.0	129.0	43.0	578.0	1572.0	2554.0	0	0	0	0
c	0	2701.0	2985.0	1368.0	10912.0	47.0	230.0	10658.0	69.0	161.0	1774.0	3145.0	3258.0	0	0	0	0
g	0	3258.0	3146.0	1775.0	161.0	68.0	10657.0	230.0	47.0	10911.0	1368.0	2986.0	2700.0	0	0	0	0
t	0	2554.0	1572.0	578.0	42.0	129.0	223.0	100.0	10965.0	95.0	7490.0	3507.0	2698.0	0	0	0	0
MA0783.1_rc_shift1 (PKNOX2_rc) 
; positions_7nt_m19 versus MA0783.1_rc (PKNOX2_rc); m=15/45; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.637493; -TGACAsCTGTCA----
; cor=; Ncor=
a	0	9.0	3.0	1167.0	0.0	1204.0	0.0	118.0	4.0	9.0	6.0	0.0	1192.0	0	0	0	0
c	0	21.0	6.0	5.0	1370.0	0.0	702.0	1298.0	1.0	0.0	13.0	1389.0	9.0	0	0	0	0
g	0	1.0	1265.0	29.0	1.0	4.0	304.0	0.0	0.0	1250.0	3.0	6.0	0.0	0	0	0	0
t	0	1190.0	11.0	10.0	3.0	0.0	39.0	7.0	1169.0	0.0	1124.0	1.0	37.0	0	0	0	0
MA1558.1_rc_shift2 (SNAI1_rc) 
; positions_7nt_m19 versus MA1558.1_rc (SNAI1_rc); m=16/45; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.632875; --yrCACCTGyh-----
; cor=; Ncor=
a	0	0	6356.0	9044.0	311.0	19982.0	28.0	306.0	568.0	340.0	3518.0	5112.0	0	0	0	0	0
c	0	0	9894.0	5306.0	19982.0	42.0	19982.0	19982.0	91.0	275.0	12989.0	6410.0	0	0	0	0	0
g	0	0	4592.0	10938.0	0.0	0.0	5.0	517.0	297.0	19982.0	501.0	3187.0	0	0	0	0	0
t	0	0	10088.0	1639.0	706.0	38.0	72.0	1766.0	19982.0	446.0	6993.0	5274.0	0	0	0	0	0
MA0500.2_shift1 (MYOG) 
; positions_7nt_m19 versus MA0500.2 (MYOG); m=17/45; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.631368; -sarCAGCTGyts----
; cor=; Ncor=
a	0	5310.0	8428.0	7159.0	86.0	21782.0	95.0	167.0	163.0	182.0	1667.0	4667.0	5018.0	0	0	0	0
c	0	6381.0	3754.0	2730.0	21988.0	176.0	130.0	21964.0	238.0	102.0	10792.0	5497.0	5660.0	0	0	0	0
g	0	5596.0	5483.0	10790.0	101.0	236.0	21963.0	131.0	179.0	21985.0	2706.0	3718.0	6369.0	0	0	0	0
t	0	5070.0	4692.0	1678.0	182.0	163.0	169.0	95.0	21777.0	88.0	7192.0	8475.0	5310.0	0	0	0	0
MA0820.1_shift2 (FIGLA) 
; positions_7nt_m19 versus MA0820.1 (FIGLA); m=18/45; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.61324; --wmCACCTGkw-----
; cor=; Ncor=
a	0	0	886.0	690.0	0.0	1780.0	0.0	9.0	56.0	36.0	154.0	455.0	0	0	0	0	0
c	0	0	270.0	693.0	1780.0	46.0	1780.0	1780.0	0.0	33.0	225.0	283.0	0	0	0	0	0
g	0	0	175.0	160.0	0.0	0.0	527.0	311.0	17.0	1780.0	569.0	289.0	0	0	0	0	0
t	0	0	449.0	237.0	29.0	14.0	0.0	0.0	1780.0	65.0	832.0	753.0	0	0	0	0	0
MA1648.1_shift2 (TCF12(var.2)) 
; positions_7nt_m19 versus MA1648.1 (TCF12(var.2)); m=19/45; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.607736; --ssCACCTGCys----
; cor=; Ncor=
a	0	0	13014.0	14835.0	955.0	52529.0	744.0	1913.0	1380.0	2819.0	1089.0	13867.0	11414.0	0	0	0	0
c	0	0	19393.0	17594.0	57848.0	2007.0	55598.0	55765.0	3886.0	2088.0	55061.0	17603.0	18154.0	0	0	0	0
g	0	0	16996.0	18560.0	1186.0	5607.0	3780.0	3536.0	2625.0	55922.0	2314.0	14293.0	20060.0	0	0	0	0
t	0	0	12473.0	10887.0	1887.0	1733.0	1754.0	662.0	53985.0	1047.0	3412.0	16113.0	12248.0	0	0	0	0
MA0797.1_rc_shift1 (TGIF2_rc) 
; positions_7nt_m19 versus MA0797.1_rc (TGIF2_rc); m=20/45; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.604014; -TGACAsCTGTCA----
; cor=; Ncor=
a	0	420.0	113.0	11801.0	83.0	11801.0	91.0	2690.0	41.0	156.0	155.0	52.0	11801.0	0	0	0	0
c	0	395.0	136.0	123.0	11801.0	57.0	4341.0	11801.0	270.0	51.0	396.0	11801.0	153.0	0	0	0	0
g	0	172.0	11801.0	621.0	77.0	410.0	7459.0	262.0	25.0	11801.0	34.0	48.0	421.0	0	0	0	0
t	0	11801.0	70.0	601.0	150.0	71.0	1501.0	324.0	11801.0	127.0	11801.0	97.0	477.0	0	0	0	0
MA0522.3_shift2 (TCF3) 
; positions_7nt_m19 versus MA0522.3 (TCF3); m=21/45; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.603795; --svCACCTGCss----
; cor=; Ncor=
a	0	0	6270.0	8032.0	469.0	28916.0	309.0	1127.0	380.0	1089.0	295.0	7276.0	5485.0	0	0	0	0
c	0	0	10212.0	9269.0	29379.0	396.0	28640.0	27199.0	2003.0	1038.0	28742.0	8727.0	10122.0	0	0	0	0
g	0	0	8539.0	9432.0	708.0	1574.0	1362.0	2652.0	1339.0	28642.0	987.0	8025.0	9222.0	0	0	0	0
t	0	0	6240.0	4528.0	705.0	375.0	950.0	283.0	27539.0	492.0	1237.0	7233.0	6432.0	0	0	0	0
MA0744.2_rc_shift1 (SCRT2_rc) 
; positions_7nt_m19 versus MA0744.2_rc (SCRT2_rc); m=22/45; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.594277; -waccACCTGTTGmwyy
; cor=; Ncor=
a	0	21453.0	18751.0	15588.0	11335.0	58889.0	2140.0	1471.0	1184.0	204.0	953.0	4384.0	3732.0	17252.0	16873.0	12071.0	15730.0
c	0	12430.0	14716.0	25288.0	38133.0	1168.0	60636.0	56105.0	252.0	319.0	1878.0	2265.0	1339.0	35769.0	12473.0	17497.0	17680.0
g	0	13846.0	16085.0	11351.0	5661.0	3475.0	972.0	728.0	294.0	64856.0	413.0	5536.0	59161.0	7236.0	6319.0	12732.0	13345.0
t	0	17881.0	16058.0	13383.0	10481.0	2078.0	1862.0	7306.0	63880.0	231.0	62366.0	53425.0	1378.0	5353.0	29945.0	23310.0	18855.0
MA0743.2_rc_shift1 (SCRT1_rc) 
; positions_7nt_m19 versus MA0743.2_rc (SCRT1_rc); m=23/45; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.593708; -wacCACCTGTTGmwtw
; cor=; Ncor=
a	0	19839.0	18454.0	13726.0	7910.0	57969.0	1579.0	1305.0	1058.0	215.0	1002.0	4017.0	2621.0	31975.0	24326.0	12449.0	15464.0
c	0	11049.0	13470.0	26973.0	41190.0	259.0	56500.0	51330.0	159.0	224.0	1566.0	1835.0	1297.0	16396.0	10154.0	14514.0	14307.0
g	0	12837.0	14903.0	8788.0	3296.0	1098.0	466.0	557.0	234.0	59557.0	370.0	8751.0	54835.0	7425.0	8693.0	10314.0	14118.0
t	0	16484.0	13382.0	10722.0	7813.0	883.0	1664.0	7017.0	58758.0	213.0	57271.0	45606.0	1456.0	4413.0	17036.0	22932.0	16320.0
MA1100.2_rc_shift2 (ASCL1_rc) 
; positions_7nt_m19 versus MA1100.2_rc (ASCL1_rc); m=24/45; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.561595; --rgCAGCTGyy-----
; cor=; Ncor=
a	0	0	1194.0	1349.0	29.0	4413.0	20.0	625.0	218.0	14.0	354.0	726.0	0	0	0	0	0
c	0	0	889.0	814.0	4413.0	121.0	1320.0	4413.0	60.0	0.0	3079.0	1495.0	0	0	0	0	0
g	0	0	1487.0	3065.0	0.0	24.0	4413.0	1288.0	157.0	4413.0	521.0	926.0	0	0	0	0	0
t	0	0	843.0	177.0	52.0	118.0	729.0	107.0	4413.0	0.0	1334.0	1267.0	0	0	0	0	0
MA0626.1_shift2 (Npas2) 
; positions_7nt_m19 versus MA0626.1 (Npas2); m=25/45; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.538997; --dsCACGTGtm-----
; cor=; Ncor=
a	0	0	273.0	154.0	0.0	999.0	81.0	81.0	0.0	81.0	74.0	297.0	0	0	0	0	0
c	0	0	177.0	377.0	999.0	0.0	918.0	0.0	0.0	0.0	172.0	299.0	0	0	0	0	0
g	0	0	293.0	420.0	0.0	0.0	0.0	918.0	0.0	918.0	188.0	202.0	0	0	0	0	0
t	0	0	257.0	48.0	0.0	0.0	0.0	0.0	999.0	0.0	566.0	202.0	0	0	0	0	0
MA1472.1_shift2 (BHLHA15(var.2)) 
; positions_7nt_m19 versus MA1472.1 (BHLHA15(var.2)); m=26/45; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.538715; --avCAGCTGyy-----
; cor=; Ncor=
a	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0	0	0	0	0	0
c	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0	0	0	0	0	0
g	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0	0	0	0	0	0
t	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0	0	0	0	0	0
MA1493.1_shift2 (HES6) 
; positions_7nt_m19 versus MA1493.1 (HES6); m=27/45; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.534874; --GGCACGTGTy-----
; cor=; Ncor=
a	0	0	12.0	16.0	17.0	439.0	2.0	10.0	0.0	0.0	33.0	79.0	0	0	0	0	0
c	0	0	39.0	35.0	439.0	0.0	439.0	12.0	7.0	0.0	21.0	152.0	0	0	0	0	0
g	0	0	439.0	439.0	19.0	9.0	9.0	439.0	29.0	439.0	0.0	0.0	0	0	0	0	0
t	0	0	43.0	13.0	15.0	11.0	16.0	0.0	439.0	0.0	439.0	209.0	0	0	0	0	0
MA1467.1_shift2 (ATOH1(var.2)) 
; positions_7nt_m19 versus MA1467.1 (ATOH1(var.2)); m=28/45; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.53308; --AACAGCTGTY-----
; cor=; Ncor=
a	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0	0	0	0	0
c	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0	0	0	0	0
g	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0	0	0	0	0
t	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0	0	0	0	0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc) 
; positions_7nt_m19 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=29/45; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.520653; --csCAGCTGsg-----
; cor=; Ncor=
a	0	0	3886.0	4449.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4402.0	0	0	0	0	0
c	0	0	5625.0	5112.0	18327.0	37.0	53.0	18288.0	52.0	11.0	7267.0	4447.0	0	0	0	0	0
g	0	0	4447.0	7269.0	15.0	52.0	18288.0	53.0	37.0	18331.0	5110.0	5621.0	0	0	0	0	0
t	0	0	4398.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4453.0	3886.0	0	0	0	0	0
MA0649.1_rc_shift2 (HEY2_rc) 
; positions_7nt_m19 versus MA0649.1_rc (HEY2_rc); m=30/45; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.514444; --grCACGTGyC-----
; cor=; Ncor=
a	0	0	264.0	753.0	30.0	1800.0	0.0	0.0	0.0	58.0	224.0	101.0	0	0	0	0	0
c	0	0	382.0	128.0	1800.0	0.0	1800.0	0.0	128.0	83.0	620.0	1800.0	0	0	0	0	0
g	0	0	869.0	1047.0	34.0	120.0	72.0	1800.0	0.0	1800.0	305.0	99.0	0	0	0	0	0
t	0	0	285.0	50.0	0.0	36.0	27.0	7.0	1800.0	84.0	651.0	107.0	0	0	0	0	0
MA0819.1_rc_shift2 (CLOCK_rc) 
; positions_7nt_m19 versus MA0819.1_rc (CLOCK_rc); m=31/45; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.513963; --raCACGTGTt-----
; cor=; Ncor=
a	0	0	174.0	429.0	9.0	429.0	0.0	28.0	0.0	2.0	13.0	75.0	0	0	0	0	0
c	0	0	39.0	110.0	429.0	5.0	429.0	0.0	15.0	2.0	89.0	93.0	0	0	0	0	0
g	0	0	128.0	152.0	3.0	5.0	0.0	429.0	5.0	429.0	85.0	35.0	0	0	0	0	0
t	0	0	89.0	1.0	0.0	3.0	40.0	16.0	429.0	11.0	429.0	226.0	0	0	0	0	0
MA0823.1_rc_shift2 (HEY1_rc) 
; positions_7nt_m19 versus MA0823.1_rc (HEY1_rc); m=32/45; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.512387; --grCACGTGyc-----
; cor=; Ncor=
a	0	0	318.0	863.0	22.0	3338.0	0.0	0.0	21.0	15.0	110.0	352.0	0	0	0	0	0
c	0	0	373.0	380.0	3338.0	10.0	3338.0	0.0	123.0	3.0	1199.0	1788.0	0	0	0	0	0
g	0	0	2172.0	1762.0	19.0	474.0	18.0	3338.0	30.0	3338.0	656.0	761.0	0	0	0	0	0
t	0	0	475.0	333.0	32.0	0.0	0.0	0.0	3338.0	1.0	1373.0	437.0	0	0	0	0	0
MA0100.3_shift2 (MYB) 
; positions_7nt_m19 versus MA0100.3 (MYB); m=33/45; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.512138; --mbCAACTGhm-----
; cor=; Ncor=
a	0	0	425.0	292.0	0.0	1478.0	1519.0	0.0	1.0	8.0	401.0	422.0	0	0	0	0	0
c	0	0	422.0	428.0	1513.0	3.0	2.0	1527.0	60.0	3.0	482.0	528.0	0	0	0	0	0
g	0	0	300.0	397.0	5.0	39.0	0.0	0.0	68.0	1516.0	147.0	225.0	0	0	0	0	0
t	0	0	380.0	410.0	9.0	7.0	6.0	0.0	1398.0	0.0	497.0	352.0	0	0	0	0	0
MA0816.1_shift2 (Ascl2) 
; positions_7nt_m19 versus MA0816.1 (Ascl2); m=34/45; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.511166; --arCAGCTGyy-----
; cor=; Ncor=
a	0	0	237.0	128.0	3.0	300.0	7.0	3.0	4.0	0.0	6.0	34.0	0	0	0	0	0
c	0	0	36.0	41.0	300.0	0.0	23.0	300.0	0.0	1.0	206.0	101.0	0	0	0	0	0
g	0	0	63.0	172.0	0.0	0.0	300.0	2.0	0.0	300.0	15.0	28.0	0	0	0	0	0
t	0	0	16.0	1.0	1.0	15.0	18.0	1.0	300.0	2.0	94.0	199.0	0	0	0	0	0
MA0667.1_shift2 (MYF6) 
; positions_7nt_m19 versus MA0667.1 (MYF6); m=35/45; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.505881; --AACArCTGTY-----
; cor=; Ncor=
a	0	0	444.0	444.0	0.0	444.0	159.0	12.0	11.0	0.0	2.0	0.0	0	0	0	0	0
c	0	0	12.0	18.0	444.0	3.0	30.0	353.0	0.0	2.0	22.0	159.0	0	0	0	0	0
g	0	0	70.0	24.0	0.0	7.0	256.0	35.0	0.0	444.0	0.0	7.0	0	0	0	0	0
t	0	0	7.0	1.0	0.0	0.0	12.0	56.0	444.0	0.0	444.0	444.0	0	0	0	0	0
MA0665.1_shift2 (MSC) 
; positions_7nt_m19 versus MA0665.1 (MSC); m=36/45; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.503393; --AACAGCTGTT-----
; cor=; Ncor=
a	0	0	69.0	69.0	0.0	69.0	0.0	0.0	0.0	0.0	3.0	0.0	0	0	0	0	0
c	0	0	0.0	12.0	69.0	0.0	12.0	69.0	0.0	0.0	10.0	9.0	0	0	0	0	0
g	0	0	18.0	3.0	3.0	0.0	69.0	3.0	0.0	69.0	4.0	4.0	0	0	0	0	0
t	0	0	7.0	0.0	1.0	0.0	0.0	0.0	69.0	4.0	69.0	69.0	0	0	0	0	0
MA1638.1_rc_shift2 (HAND2_rc) 
; positions_7nt_m19 versus MA1638.1_rc (HAND2_rc); m=37/45; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.502831; --rvCATCTGkt-----
; cor=; Ncor=
a	0	0	7783.0	8498.0	49.0	27962.0	23.0	85.0	4.0	70.0	3155.0	7120.0	0	0	0	0	0
c	0	0	6108.0	8878.0	29851.0	31.0	38.0	30144.0	647.0	132.0	6994.0	7463.0	0	0	0	0	0
g	0	0	10227.0	7690.0	149.0	2276.0	30.0	42.0	410.0	30062.0	11298.0	5564.0	0	0	0	0	0
t	0	0	6165.0	5217.0	234.0	14.0	30192.0	12.0	29222.0	19.0	8836.0	10136.0	0	0	0	0	0
MA0774.1_rc_shift6 (MEIS2_rc) 
; positions_7nt_m19 versus MA0774.1_rc (MEIS2_rc); m=38/45; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.471051; ------sCTGTCAa---
; cor=; Ncor=
a	0	0	0	0	0	0	88.0	67.0	0.0	5.0	62.0	0.0	1351.0	1351.0	0	0	0
c	0	0	0	0	0	0	650.0	1351.0	4.0	0.0	25.0	1351.0	40.0	314.0	0	0	0
g	0	0	0	0	0	0	701.0	98.0	7.0	1351.0	3.0	0.0	3.0	264.0	0	0	0
t	0	0	0	0	0	0	157.0	83.0	1351.0	9.0	1351.0	0.0	31.0	408.0	0	0	0
MA0775.1_rc_shift6 (MEIS3_rc) 
; positions_7nt_m19 versus MA0775.1_rc (MEIS3_rc); m=39/45; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.463461; ------scTGTCAw---
; cor=; Ncor=
a	0	0	0	0	0	0	975.0	2094.0	145.0	160.0	53.0	0.0	7165.0	3451.0	0	0	0
c	0	0	0	0	0	0	2888.0	7165.0	468.0	8.0	455.0	7165.0	260.0	1788.0	0	0	0
g	0	0	0	0	0	0	2342.0	1889.0	8.0	7165.0	20.0	6.0	383.0	60.0	0	0	0
t	0	0	0	0	0	0	960.0	1690.0	7165.0	53.0	7165.0	0.0	465.0	1866.0	0	0	0
MA0807.1_rc_shift1 (TBX5_rc) 
; positions_7nt_m19 versus MA0807.1_rc (TBX5_rc); m=40/45; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.441114; -TmACACCT--------
; cor=; Ncor=
a	0	283.0	915.0	1804.0	0.0	1804.0	28.0	133.0	207.0	0	0	0	0	0	0	0	0
c	0	343.0	1804.0	201.0	1804.0	166.0	1804.0	1804.0	409.0	0	0	0	0	0	0	0	0
g	0	76.0	616.0	225.0	0.0	131.0	0.0	190.0	89.0	0	0	0	0	0	0	0	0
t	0	1804.0	126.0	162.0	27.0	45.0	0.0	235.0	1804.0	0	0	0	0	0	0	0	0
MA0806.1_rc_shift1 (TBX4_rc) 
; positions_7nt_m19 versus MA0806.1_rc (TBX4_rc); m=41/45; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.435773; -TcACACCT--------
; cor=; Ncor=
a	0	965.0	8384.0	18646.0	0.0	18646.0	33.0	1162.0	1283.0	0	0	0	0	0	0	0	0
c	0	1733.0	18646.0	304.0	18646.0	191.0	18646.0	18646.0	2353.0	0	0	0	0	0	0	0	0
g	0	588.0	5396.0	2859.0	0.0	1644.0	189.0	2328.0	437.0	0	0	0	0	0	0	0	0
t	0	18646.0	1355.0	1551.0	0.0	0.0	38.0	3082.0	18646.0	0	0	0	0	0	0	0	0
MA0622.1_shift3 (Mlxip) 
; positions_7nt_m19 versus MA0622.1 (Mlxip); m=42/45; ncol2=8; w=8; offset=3; strand=D; shift=3; score=0.432015; ---bCACGTGk------
; cor=; Ncor=
a	0	0	0	53.0	0.0	999.0	0.0	0.0	0.0	0.0	188.0	0	0	0	0	0	0
c	0	0	0	263.0	999.0	0.0	999.0	0.0	0.0	0.0	63.0	0	0	0	0	0	0
g	0	0	0	421.0	0.0	0.0	0.0	999.0	0.0	999.0	250.0	0	0	0	0	0	0
t	0	0	0	263.0	0.0	0.0	0.0	0.0	999.0	0.0	499.0	0	0	0	0	0	0
MA0803.1_rc_shift1 (TBX15_rc) 
; positions_7nt_m19 versus MA0803.1_rc (TBX15_rc); m=43/45; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.413184; -TCACACCT--------
; cor=; Ncor=
a	0	96.0	937.0	10502.0	0.0	10502.0	0.0	103.0	112.0	0	0	0	0	0	0	0	0
c	0	306.0	10502.0	324.0	10502.0	245.0	10502.0	10502.0	664.0	0	0	0	0	0	0	0	0
g	0	71.0	454.0	435.0	8.0	175.0	7.0	101.0	74.0	0	0	0	0	0	0	0	0
t	0	10502.0	44.0	140.0	0.0	61.0	19.0	458.0	10502.0	0	0	0	0	0	0	0	0
MA0498.2_rc_shift7 (MEIS1_rc) 
; positions_7nt_m19 versus MA0498.2_rc (MEIS1_rc); m=44/45; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.407028; -------cTGTCAw---
; cor=; Ncor=
a	0	0	0	0	0	0	0	15106.0	3861.0	1155.0	0.0	0.0	77159.0	24921.0	0	0	0
c	0	0	0	0	0	0	0	29965.0	9263.0	0.0	672.0	77159.0	3174.0	9714.0	0	0	0
g	0	0	0	0	0	0	0	14864.0	0.0	77159.0	2903.0	1249.0	5575.0	18797.0	0	0	0
t	0	0	0	0	0	0	0	17224.0	77159.0	0.0	77159.0	0.0	8690.0	23727.0	0	0	0
MA0805.1_rc_shift1 (TBX1_rc) 
; positions_7nt_m19 versus MA0805.1_rc (TBX1_rc); m=45/45; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.40008; -TCACACCT--------
; cor=; Ncor=
a	0	0.0	1039.0	11931.0	0.0	11931.0	0.0	669.0	564.0	0	0	0	0	0	0	0	0
c	0	18.0	11931.0	109.0	11931.0	141.0	11931.0	11931.0	1007.0	0	0	0	0	0	0	0	0
g	0	33.0	720.0	613.0	5.0	214.0	0.0	711.0	113.0	0	0	0	0	0	0	0	0
t	0	11931.0	141.0	142.0	0.0	28.0	0.0	1560.0	11931.0	0	0	0	0	0	0	0	0