One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m24/peak-motifs_positions_7nt_m24.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m24/peak-motifs_positions_7nt_m24_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_7nt_m24_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m24_shift0 (positions_7nt_m24positions_7nt_m24)
; positions_7nt_m24 (positions_7nt_m24positions_7nt_m24); m=0 (reference); ncol1=21; shift=0; ncol=21; sbcTCAGCTGCCAGCTGGvss ; Alignment reference a 56 42 33 26 3 219 2 8 8 2 19 4 215 5 11 6 5 12 58 51 55 c 60 70 124 24 218 5 13 210 5 12 168 219 5 20 205 4 7 28 67 64 68 g 72 60 50 12 8 2 209 10 8 213 19 2 4 197 9 5 210 175 64 73 65 t 44 60 25 170 3 6 8 4 211 5 26 7 8 10 7 217 10 17 43 44 44

MA0500.2_rc_shift1 (MYOG_rc)
; positions_7nt_m24 versus MA0500.2_rc (MYOG_rc); m=1/9; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.441806; -sarCAGCTGyts-------- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0 0 0 0

MA1109.1_shift8 (NEUROD1)
; positions_7nt_m24 versus MA1109.1 (NEUROD1); m=2/9; ncol2=13; w=13; offset=8; strand=D; shift=8; score=0.434866; --------graCAGATGGyrs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0

MA0521.1_rc_shift1 (Tcf12_rc)
; positions_7nt_m24 versus MA0521.1_rc (Tcf12_rc); m=3/9; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.428942; -cwsCAGCTGYy--------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0 0

MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)
; positions_7nt_m24 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=4/9; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.420971; -rmaCAGCTGtky-------- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0 0 0

MA1641.1_shift1 (MYF5)
; positions_7nt_m24 versus MA1641.1 (MYF5); m=5/9; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.416119; -gvaCAGCTGtbc-------- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0 0

MA1635.1_shift9 (BHLHE22(var.2))
; positions_7nt_m24 versus MA1635.1 (BHLHE22(var.2)); m=6/9; ncol2=10; w=10; offset=9; strand=D; shift=9; score=0.407223; ---------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1571.1_shift1 (TGIF2LX)
; positions_7nt_m24 versus MA1571.1 (TGIF2LX); m=7/9; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.407126; -TGACAgcTGTCA-------- ; cor=; Ncor= a 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 0 0 0 c 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 0 0 0 g 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 0 0 0 t 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0 0 0 0

MA1572.1_shift1 (TGIF2LY)
; positions_7nt_m24 versus MA1572.1 (TGIF2LY); m=8/9; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.402069; -TGACAgcTGTCA-------- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0 0 0 0

MA0796.1_rc_shift1 (TGIF1_rc)
; positions_7nt_m24 versus MA0796.1_rc (TGIF1_rc); m=9/9; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.401862; -TGACAGCTGTCA-------- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m24_shift0 (positions_7nt_m24positions_7nt_m24)				; positions_7nt_m24 (positions_7nt_m24positions_7nt_m24); m=0 (reference); ncol1=21; shift=0; ncol=21; sbcTCAGCTGCCAGCTGGvss ; Alignment reference a 56 42 33 26 3 219 2 8 8 2 19 4 215 5 11 6 5 12 58 51 55 c 60 70 124 24 218 5 13 210 5 12 168 219 5 20 205 4 7 28 67 64 68 g 72 60 50 12 8 2 209 10 8 213 19 2 4 197 9 5 210 175 64 73 65 t 44 60 25 170 3 6 8 4 211 5 26 7 8 10 7 217 10 17 43 44 44
MA0500.2_rc_shift1 (MYOG_rc)				; positions_7nt_m24 versus MA0500.2_rc (MYOG_rc); m=1/9; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.441806; -sarCAGCTGyts-------- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0 0 0 0
MA1109.1_shift8 (NEUROD1)				; positions_7nt_m24 versus MA1109.1 (NEUROD1); m=2/9; ncol2=13; w=13; offset=8; strand=D; shift=8; score=0.434866; --------graCAGATGGyrs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0
MA0521.1_rc_shift1 (Tcf12_rc)				; positions_7nt_m24 versus MA0521.1_rc (Tcf12_rc); m=3/9; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.428942; -cwsCAGCTGYy--------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0 0
MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)				; positions_7nt_m24 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=4/9; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.420971; -rmaCAGCTGtky-------- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0 0 0
MA1641.1_shift1 (MYF5)				; positions_7nt_m24 versus MA1641.1 (MYF5); m=5/9; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.416119; -gvaCAGCTGtbc-------- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0 0
MA1635.1_shift9 (BHLHE22(var.2))				; positions_7nt_m24 versus MA1635.1 (BHLHE22(var.2)); m=6/9; ncol2=10; w=10; offset=9; strand=D; shift=9; score=0.407223; ---------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA1571.1_shift1 (TGIF2LX)				; positions_7nt_m24 versus MA1571.1 (TGIF2LX); m=7/9; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.407126; -TGACAgcTGTCA-------- ; cor=; Ncor= a 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 0 0 0 c 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 0 0 0 g 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 0 0 0 t 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0 0 0 0
MA1572.1_shift1 (TGIF2LY)				; positions_7nt_m24 versus MA1572.1 (TGIF2LY); m=8/9; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.402069; -TGACAgcTGTCA-------- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0 0 0 0
MA0796.1_rc_shift1 (TGIF1_rc)				; positions_7nt_m24 versus MA0796.1_rc (TGIF1_rc); m=9/9; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.401862; -TGACAGCTGTCA-------- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0 0 0 0