One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_7nt_m4_shift3 ; 44 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_7nt_m4_shift3 (positions_7nt_m4positions_7nt_m4)     
; positions_7nt_m4 (positions_7nt_m4positions_7nt_m4); m=0 (reference); ncol1=14; shift=3; ncol=17; ---rsaACAGGTGCagr
; Alignment reference
a	0	0	0	1379	957	3243	4521	9	4781	29	114	42	15	246	2425	1068	1262
c	0	0	0	940	1286	643	53	4799	16	56	735	19	19	3325	919	1169	1162
g	0	0	0	1775	1687	876	252	18	20	4714	3943	20	4780	714	648	1759	1551
t	0	0	0	742	906	74	10	10	19	37	44	4755	22	551	844	840	861
MA0499.2_rc_shift3 (MYOD1_rc) 
; positions_7nt_m4 versus MA0499.2_rc (MYOD1_rc); m=1/43; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.890968; ---rkrACAGGTGcwg-
; cor=; Ncor=
a	0	0	0	9358.0	8151.0	9000.0	29644.0	238.0	33130.0	330.0	1226.0	587.0	269.0	2245.0	9291.0	7728.0	0
c	0	0	0	7495.0	6202.0	4440.0	1699.0	33468.0	366.0	932.0	7336.0	849.0	354.0	21884.0	8444.0	8118.0	0
g	0	0	0	11760.0	10485.0	19052.0	2555.0	386.0	563.0	32504.0	25275.0	583.0	33328.0	5622.0	7103.0	11279.0	0
t	0	0	0	5687.0	9462.0	1808.0	402.0	208.0	241.0	534.0	463.0	32281.0	349.0	4549.0	9462.0	7175.0	0
MA1621.1_rc_shift3 (Rbpjl_rc) 
; positions_7nt_m4 versus MA1621.1_rc (Rbpjl_rc); m=2/43; ncol2=14; w=14; offset=0; strand=R; shift=3; score=0.878475; ---grsaCAGGTGtkbs
; cor=; Ncor=
a	0	0	0	2286.0	2537.0	2179.0	5784.0	124.0	9313.0	96.0	363.0	86.0	137.0	782.0	1364.0	2210.0	2289.0
c	0	0	0	2281.0	1958.0	2687.0	1581.0	9295.0	132.0	317.0	672.0	110.0	103.0	1492.0	1802.0	2549.0	2476.0
g	0	0	0	3003.0	2884.0	3247.0	1718.0	131.0	144.0	9005.0	8533.0	70.0	9273.0	1373.0	3117.0	2427.0	2881.0
t	0	0	0	2082.0	2273.0	1539.0	569.0	102.0	63.0	234.0	84.0	9386.0	139.0	6005.0	3369.0	2466.0	2006.0
MA0745.2_rc_shift3 (SNAI2_rc) 
; positions_7nt_m4 versus MA0745.2_rc (SNAI2_rc); m=3/43; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.878397; ---rykACAGGTGcrt-
; cor=; Ncor=
a	0	0	0	17906.0	8917.0	8747.0	37272.0	126.0	45229.0	344.0	234.0	227.0	622.0	2359.0	16344.0	9958.0	0
c	0	0	0	8219.0	12297.0	6281.0	1263.0	45257.0	196.0	487.0	326.0	424.0	323.0	26742.0	9490.0	11169.0	0
g	0	0	0	13476.0	11016.0	18771.0	6467.0	254.0	313.0	44739.0	45144.0	202.0	44463.0	6393.0	12314.0	10031.0	0
t	0	0	0	6215.0	13586.0	12017.0	814.0	179.0	78.0	246.0	112.0	44963.0	408.0	10322.0	7668.0	14658.0	0
MA0830.2_rc_shift3 (TCF4_rc) 
; positions_7nt_m4 versus MA0830.2_rc (TCF4_rc); m=4/43; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.788749; ---ssggCAGGTGccg-
; cor=; Ncor=
a	0	0	0	6827.0	6430.0	6126.0	3555.0	242.0	27398.0	188.0	751.0	512.0	215.0	1737.0	7059.0	6225.0	0
c	0	0	0	7662.0	7964.0	4933.0	5281.0	28432.0	679.0	1197.0	1733.0	1295.0	321.0	18498.0	8618.0	7140.0	0
g	0	0	0	9843.0	8658.0	12872.0	18935.0	540.0	1016.0	27724.0	26765.0	635.0	28686.0	5062.0	6754.0	10052.0	0
t	0	0	0	5133.0	6413.0	5534.0	1694.0	251.0	372.0	356.0	216.0	27023.0	243.0	4168.0	7034.0	6048.0	0
MA1631.1_rc_shift3 (ASCL1(var.2)_rc) 
; positions_7nt_m4 versus MA1631.1_rc (ASCL1(var.2)_rc); m=5/43; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.76274; ---gsrGCAGGTGchg-
; cor=; Ncor=
a	0	0	0	8032.0	7779.0	9017.0	2394.0	249.0	32756.0	151.0	815.0	618.0	289.0	3290.0	8805.0	7347.0	0
c	0	0	0	8356.0	8939.0	2966.0	2719.0	33411.0	492.0	607.0	3209.0	860.0	321.0	18576.0	8601.0	8371.0	0
g	0	0	0	11996.0	10555.0	17883.0	28844.0	445.0	740.0	33402.0	30169.0	563.0	33562.0	6654.0	7998.0	11805.0	0
t	0	0	0	5972.0	7083.0	4490.0	399.0	251.0	368.0	196.0	163.0	32315.0	184.0	5836.0	8952.0	6833.0	0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc) 
; positions_7nt_m4 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=6/43; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.756273; ----rmaCAGGTGtky-
; cor=; Ncor=
a	0	0	0	0	2811.0	2745.0	6633.0	142.0	10014.0	129.0	426.0	114.0	107.0	826.0	1599.0	2324.0	0
c	0	0	0	0	2183.0	3341.0	1516.0	9972.0	98.0	294.0	1182.0	84.0	113.0	1410.0	2379.0	2664.0	0
g	0	0	0	0	3004.0	2527.0	1615.0	109.0	94.0	9612.0	8567.0	60.0	9887.0	1188.0	3700.0	2469.0	0
t	0	0	0	0	2293.0	1678.0	527.0	68.0	85.0	256.0	116.0	10033.0	184.0	6867.0	2613.0	2834.0	0
MA0832.1_shift3 (Tcf21) 
; positions_7nt_m4 versus MA0832.1 (Tcf21); m=7/43; ncol2=14; w=14; offset=0; strand=D; shift=3; score=0.730692; ---ryAACAGCTGTTry
; cor=; Ncor=
a	0	0	0	55.0	28.0	171.0	171.0	0.0	171.0	0.0	0.0	0.0	0.0	0.0	5.0	50.0	30.0
c	0	0	0	29.0	76.0	1.0	10.0	171.0	1.0	0.0	171.0	0.0	0.0	4.0	23.0	23.0	49.0
g	0	0	0	70.0	22.0	23.0	0.0	0.0	0.0	171.0	1.0	0.0	171.0	20.0	0.0	80.0	32.0
t	0	0	0	17.0	46.0	3.0	0.0	0.0	0.0	2.0	1.0	171.0	0.0	171.0	171.0	19.0	60.0
MA1618.1_shift4 (Ptf1a) 
; positions_7nt_m4 versus MA1618.1 (Ptf1a); m=8/43; ncol2=13; w=13; offset=1; strand=D; shift=4; score=0.68649; ----dmaCAGATGttkh
; cor=; Ncor=
a	0	0	0	0	4092.0	4476.0	8554.0	133.0	14064.0	250.0	12132.0	126.0	241.0	965.0	1511.0	3491.0	3754.0
c	0	0	0	0	2989.0	3662.0	2747.0	14006.0	118.0	466.0	1724.0	224.0	122.0	2058.0	2341.0	3601.0	3689.0
g	0	0	0	0	3661.0	3568.0	2414.0	130.0	153.0	13072.0	437.0	118.0	13868.0	2854.0	2295.0	3664.0	3376.0
t	0	0	0	0	3699.0	2735.0	726.0	172.0	106.0	653.0	148.0	13973.0	210.0	8564.0	8294.0	3685.0	3622.0
MA0521.1_shift5 (Tcf12) 
; positions_7nt_m4 versus MA0521.1 (Tcf12); m=9/43; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.685841; -----rRCAGCTGswg-
; cor=; Ncor=
a	0	0	0	0	0	6170.0	8820.0	0.0	12895.0	8.0	184.0	0.0	0.0	1875.0	3912.0	2863.0	0
c	0	0	0	0	0	1585.0	124.0	12895.0	0.0	0.0	10822.0	0.0	0.0	5527.0	2416.0	3005.0	0
g	0	0	0	0	0	5123.0	3951.0	0.0	0.0	12887.0	1889.0	0.0	12895.0	3811.0	2925.0	4836.0	0
t	0	0	0	0	0	17.0	0.0	0.0	0.0	0.0	0.0	12895.0	0.0	1682.0	3642.0	2191.0	0
MA1559.1_shift5 (SNAI3) 
; positions_7nt_m4 versus MA1559.1 (SNAI3); m=10/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.685466; -----arCAGGTGya--
; cor=; Ncor=
a	0	0	0	0	0	2952.0	3917.0	23.0	6248.0	118.0	0.0	0.0	94.0	432.0	4680.0	0	0
c	0	0	0	0	0	661.0	0.0	6248.0	0.0	29.0	18.0	12.0	0.0	6248.0	688.0	0	0
g	0	0	0	0	0	1525.0	2331.0	0.0	34.0	6248.0	6248.0	28.0	6248.0	1701.0	1569.0	0	0
t	0	0	0	0	0	1110.0	183.0	35.0	3.0	43.0	0.0	6248.0	30.0	3161.0	553.0	0	0
MA1109.1_shift4 (NEUROD1) 
; positions_7nt_m4 versus MA1109.1 (NEUROD1); m=11/43; ncol2=13; w=13; offset=1; strand=D; shift=4; score=0.663263; ----graCAGATGGyrs
; cor=; Ncor=
a	0	0	0	0	561.0	755.0	1289.0	17.0	2241.0	16.0	2034.0	55.0	13.0	59.0	373.0	692.0	538.0
c	0	0	0	0	429.0	323.0	452.0	2240.0	7.0	24.0	150.0	51.0	7.0	93.0	911.0	540.0	591.0
g	0	0	0	0	726.0	906.0	494.0	13.0	16.0	2152.0	77.0	19.0	2231.0	1962.0	418.0	599.0	628.0
t	0	0	0	0	566.0	298.0	47.0	12.0	18.0	90.0	21.0	2157.0	31.0	168.0	580.0	451.0	525.0
MA1619.1_rc_shift4 (Ptf1a(var.2)_rc) 
; positions_7nt_m4 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=12/43; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.660979; ----rmaCAGCTGtky-
; cor=; Ncor=
a	0	0	0	0	1871.0	1974.0	4341.0	49.0	7121.0	33.0	223.0	28.0	27.0	529.0	1216.0	1607.0	0
c	0	0	0	0	1803.0	2426.0	1065.0	7150.0	40.0	299.0	6689.0	65.0	28.0	1308.0	1629.0	1974.0	0
g	0	0	0	0	1977.0	1632.0	1312.0	27.0	66.0	6697.0	307.0	41.0	7149.0	1070.0	2430.0	1803.0	0
t	0	0	0	0	1602.0	1221.0	535.0	27.0	26.0	224.0	34.0	7119.0	49.0	4346.0	1978.0	1869.0	0
MA1642.1_shift3 (NEUROG2(var.2)) 
; positions_7nt_m4 versus MA1642.1 (NEUROG2(var.2)); m=13/43; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.660771; ---rrraCAGATGGyv-
; cor=; Ncor=
a	0	0	0	8690.0	9047.0	12089.0	16448.0	278.0	33720.0	400.0	32746.0	649.0	280.0	1523.0	6665.0	9464.0	0
c	0	0	0	7353.0	6843.0	6467.0	8154.0	33559.0	211.0	793.0	952.0	904.0	205.0	2966.0	10441.0	9034.0	0
g	0	0	0	10813.0	10123.0	11114.0	8039.0	317.0	301.0	30392.0	418.0	323.0	33422.0	24998.0	7581.0	8709.0	0
t	0	0	0	7535.0	8378.0	4721.0	1750.0	237.0	159.0	2806.0	275.0	32515.0	484.0	4904.0	9704.0	7184.0	0
MA0500.2_rc_shift4 (MYOG_rc) 
; positions_7nt_m4 versus MA0500.2_rc (MYOG_rc); m=14/43; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.65951; ----sarCAGCTGyts-
; cor=; Ncor=
a	0	0	0	0	5310.0	8475.0	7192.0	88.0	21777.0	95.0	169.0	163.0	182.0	1678.0	4692.0	5070.0	0
c	0	0	0	0	6369.0	3718.0	2706.0	21985.0	179.0	131.0	21963.0	236.0	101.0	10790.0	5483.0	5596.0	0
g	0	0	0	0	5660.0	5497.0	10792.0	102.0	238.0	21964.0	130.0	176.0	21988.0	2730.0	3754.0	6381.0	0
t	0	0	0	0	5018.0	4667.0	1667.0	182.0	163.0	167.0	95.0	21782.0	86.0	7159.0	8428.0	5310.0	0
MA1641.1_shift4 (MYF5) 
; positions_7nt_m4 versus MA1641.1 (MYF5); m=15/43; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.657504; ----gvaCAGCTGtbc-
; cor=; Ncor=
a	0	0	0	0	2698.0	3507.0	7490.0	95.0	10965.0	100.0	223.0	129.0	42.0	578.0	1572.0	2554.0	0
c	0	0	0	0	2700.0	2986.0	1368.0	10911.0	47.0	230.0	10657.0	68.0	161.0	1775.0	3146.0	3258.0	0
g	0	0	0	0	3258.0	3145.0	1774.0	161.0	69.0	10658.0	230.0	47.0	10912.0	1368.0	2985.0	2701.0	0
t	0	0	0	0	2554.0	1572.0	578.0	43.0	129.0	222.0	100.0	10966.0	95.0	7489.0	3507.0	2697.0	0
MA0744.2_shift0 (SCRT2) 
; positions_7nt_m4 versus MA0744.2 (SCRT2); m=16/43; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.654474; rrwkCAACAGGTggtw-
; cor=; Ncor=
a	18855.0	23310.0	29945.0	5353.0	1378.0	53425.0	62366.0	231.0	63880.0	7306.0	1862.0	2078.0	10481.0	13383.0	16058.0	17881.0	0
c	13345.0	12732.0	6319.0	7236.0	59161.0	5536.0	413.0	64856.0	294.0	728.0	972.0	3475.0	5661.0	11351.0	16085.0	13846.0	0
g	17680.0	17497.0	12473.0	35769.0	1339.0	2265.0	1878.0	319.0	252.0	56105.0	60636.0	1168.0	38133.0	25288.0	14716.0	12430.0	0
t	15730.0	12071.0	16873.0	17252.0	3732.0	4384.0	953.0	204.0	1184.0	1471.0	2140.0	58889.0	11335.0	15588.0	18751.0	21453.0	0
MA0103.3_rc_shift4 (ZEB1_rc) 
; positions_7nt_m4 versus MA0103.3_rc (ZEB1_rc); m=17/43; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.65182; ----sssCAGGTGss--
; cor=; Ncor=
a	0	0	0	0	3856.0	3153.0	3408.0	129.0	19269.0	30.0	122.0	1.0	662.0	4715.0	3692.0	0	0
c	0	0	0	0	5828.0	6601.0	5178.0	19381.0	355.0	649.0	97.0	223.0	158.0	5179.0	5228.0	0	0
g	0	0	0	0	6955.0	6117.0	9561.0	178.0	501.0	19257.0	19878.0	0.0	19195.0	5550.0	7998.0	0	0
t	0	0	0	0	3490.0	4258.0	1982.0	441.0	4.0	193.0	32.0	19905.0	114.0	4685.0	3211.0	0	0
MA0743.2_shift0 (SCRT1) 
; positions_7nt_m4 versus MA0743.2 (SCRT1); m=18/43; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.650715; wawkCAACAGGTGgtw-
; cor=; Ncor=
a	16320.0	22932.0	17036.0	4413.0	1456.0	45606.0	57271.0	213.0	58758.0	7017.0	1664.0	883.0	7813.0	10722.0	13382.0	16484.0	0
c	14118.0	10314.0	8693.0	7425.0	54835.0	8751.0	370.0	59557.0	234.0	557.0	466.0	1098.0	3296.0	8788.0	14903.0	12837.0	0
g	14307.0	14514.0	10154.0	16396.0	1297.0	1835.0	1566.0	224.0	159.0	51330.0	56500.0	259.0	41190.0	26973.0	13470.0	11049.0	0
t	15464.0	12449.0	24326.0	31975.0	2621.0	4017.0	1002.0	215.0	1058.0	1305.0	1579.0	57969.0	7910.0	13726.0	18454.0	19839.0	0
MA1105.2_shift3 (GRHL2) 
; positions_7nt_m4 versus MA1105.2 (GRHL2); m=19/43; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.648419; ---arAACAGGTTtk--
; cor=; Ncor=
a	0	0	0	14483.0	17842.0	36467.0	37065.0	503.0	34024.0	2824.0	642.0	1878.0	1752.0	7061.0	8868.0	0	0
c	0	0	0	9741.0	6996.0	1147.0	712.0	40446.0	1543.0	581.0	987.0	2331.0	2000.0	9341.0	8528.0	0	0
g	0	0	0	9161.0	10776.0	2646.0	2841.0	609.0	485.0	37226.0	39624.0	748.0	1220.0	7961.0	10536.0	0	0
t	0	0	0	8493.0	6264.0	1618.0	1260.0	320.0	5826.0	1247.0	625.0	36921.0	36906.0	17515.0	13946.0	0	0
MA0820.1_rc_shift5 (FIGLA_rc) 
; positions_7nt_m4 versus MA0820.1_rc (FIGLA_rc); m=20/43; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.630159; -----wmCAGGTGkw--
; cor=; Ncor=
a	0	0	0	0	0	753.0	832.0	65.0	1780.0	0.0	0.0	14.0	29.0	237.0	449.0	0	0
c	0	0	0	0	0	289.0	569.0	1780.0	17.0	311.0	527.0	0.0	0.0	160.0	175.0	0	0
g	0	0	0	0	0	283.0	225.0	33.0	0.0	1780.0	1780.0	46.0	1780.0	693.0	270.0	0	0
t	0	0	0	0	0	455.0	154.0	36.0	56.0	9.0	0.0	1780.0	0.0	690.0	886.0	0	0
MA1558.1_shift5 (SNAI1) 
; positions_7nt_m4 versus MA1558.1 (SNAI1); m=21/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.628393; -----drCAGGTGyr--
; cor=; Ncor=
a	0	0	0	0	0	5274.0	6993.0	446.0	19982.0	1766.0	72.0	38.0	706.0	1639.0	10088.0	0	0
c	0	0	0	0	0	3187.0	501.0	19982.0	297.0	517.0	5.0	0.0	0.0	10938.0	4592.0	0	0
g	0	0	0	0	0	6410.0	12989.0	275.0	91.0	19982.0	19982.0	42.0	19982.0	5306.0	9894.0	0	0
t	0	0	0	0	0	5112.0	3518.0	340.0	568.0	306.0	28.0	19982.0	311.0	9044.0	6356.0	0	0
MA1648.1_rc_shift4 (TCF12(var.2)_rc) 
; positions_7nt_m4 versus MA1648.1_rc (TCF12(var.2)_rc); m=22/43; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.610531; ----srGCAGGTGss--
; cor=; Ncor=
a	0	0	0	0	12248.0	16113.0	3412.0	1047.0	53985.0	662.0	1754.0	1733.0	1887.0	10887.0	12473.0	0	0
c	0	0	0	0	20060.0	14293.0	2314.0	55922.0	2625.0	3536.0	3780.0	5607.0	1186.0	18560.0	16996.0	0	0
g	0	0	0	0	18154.0	17603.0	55061.0	2088.0	3886.0	55765.0	55598.0	2007.0	57848.0	17594.0	19393.0	0	0
t	0	0	0	0	11414.0	13867.0	1089.0	2819.0	1380.0	1913.0	744.0	52529.0	955.0	14835.0	13014.0	0	0
MA0522.3_rc_shift4 (TCF3_rc) 
; positions_7nt_m4 versus MA0522.3_rc (TCF3_rc); m=23/43; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.604043; ----ssGCAGGTGbs--
; cor=; Ncor=
a	0	0	0	0	6432.0	7233.0	1237.0	492.0	27539.0	283.0	950.0	375.0	705.0	4528.0	6240.0	0	0
c	0	0	0	0	9222.0	8025.0	987.0	28642.0	1339.0	2652.0	1362.0	1574.0	708.0	9432.0	8539.0	0	0
g	0	0	0	0	10122.0	8727.0	28742.0	1038.0	2003.0	27199.0	28640.0	396.0	29379.0	9269.0	10212.0	0	0
t	0	0	0	0	5485.0	7276.0	295.0	1089.0	380.0	1127.0	309.0	28916.0	469.0	8032.0	6270.0	0	0
MA1100.2_shift5 (ASCL1) 
; positions_7nt_m4 versus MA1100.2 (ASCL1); m=24/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.56942; -----rrCAGCTGcy--
; cor=; Ncor=
a	0	0	0	0	0	1267.0	1334.0	0.0	4413.0	107.0	729.0	118.0	52.0	177.0	843.0	0	0
c	0	0	0	0	0	926.0	521.0	4413.0	157.0	1288.0	4413.0	24.0	0.0	3065.0	1487.0	0	0
g	0	0	0	0	0	1495.0	3079.0	0.0	60.0	4413.0	1320.0	121.0	4413.0	814.0	889.0	0	0
t	0	0	0	0	0	726.0	354.0	14.0	218.0	625.0	20.0	4413.0	29.0	1349.0	1194.0	0	0
MA1472.1_shift5 (BHLHA15(var.2)) 
; positions_7nt_m4 versus MA1472.1 (BHLHA15(var.2)); m=25/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.558454; -----avCAGCTGyy--
; cor=; Ncor=
a	0	0	0	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0	0	0
c	0	0	0	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0	0	0
g	0	0	0	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0	0	0
t	0	0	0	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0	0	0
MA0816.1_shift5 (Ascl2) 
; positions_7nt_m4 versus MA0816.1 (Ascl2); m=26/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.555469; -----arCAGCTGyy--
; cor=; Ncor=
a	0	0	0	0	0	237.0	128.0	3.0	300.0	7.0	3.0	4.0	0.0	6.0	34.0	0	0
c	0	0	0	0	0	36.0	41.0	300.0	0.0	23.0	300.0	0.0	1.0	206.0	101.0	0	0
g	0	0	0	0	0	63.0	172.0	0.0	0.0	300.0	2.0	0.0	300.0	15.0	28.0	0	0
t	0	0	0	0	0	16.0	1.0	1.0	15.0	18.0	1.0	300.0	2.0	94.0	199.0	0	0
MA0665.1_rc_shift5 (MSC_rc) 
; positions_7nt_m4 versus MA0665.1_rc (MSC_rc); m=27/43; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.553664; -----AACAGCTGTT--
; cor=; Ncor=
a	0	0	0	0	0	69.0	69.0	4.0	69.0	0.0	0.0	0.0	1.0	0.0	7.0	0	0
c	0	0	0	0	0	4.0	4.0	69.0	0.0	3.0	69.0	0.0	3.0	3.0	18.0	0	0
g	0	0	0	0	0	9.0	10.0	0.0	0.0	69.0	12.0	0.0	69.0	12.0	0.0	0	0
t	0	0	0	0	0	0.0	3.0	0.0	0.0	0.0	0.0	69.0	0.0	69.0	69.0	0	0
MA1467.1_shift5 (ATOH1(var.2)) 
; positions_7nt_m4 versus MA1467.1 (ATOH1(var.2)); m=28/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.550865; -----AACAGCTGTY--
; cor=; Ncor=
a	0	0	0	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0	0
c	0	0	0	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0	0
g	0	0	0	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0	0
t	0	0	0	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0	0
MA1493.1_rc_shift5 (HES6_rc) 
; positions_7nt_m4 versus MA1493.1_rc (HES6_rc); m=29/43; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.541581; -----rACACGTGCC--
; cor=; Ncor=
a	0	0	0	0	0	209.0	439.0	0.0	439.0	0.0	16.0	11.0	15.0	13.0	43.0	0	0
c	0	0	0	0	0	0.0	0.0	439.0	29.0	439.0	9.0	9.0	19.0	439.0	439.0	0	0
g	0	0	0	0	0	152.0	21.0	0.0	7.0	12.0	439.0	0.0	439.0	35.0	39.0	0	0
t	0	0	0	0	0	79.0	33.0	0.0	0.0	10.0	2.0	439.0	17.0	16.0	12.0	0	0
MA0667.1_rc_shift5 (MYF6_rc) 
; positions_7nt_m4 versus MA0667.1_rc (MYF6_rc); m=30/43; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.537162; -----RACAGyTGTT--
; cor=; Ncor=
a	0	0	0	0	0	444.0	444.0	0.0	444.0	56.0	12.0	0.0	0.0	1.0	7.0	0	0
c	0	0	0	0	0	7.0	0.0	444.0	0.0	35.0	256.0	7.0	0.0	24.0	70.0	0	0
g	0	0	0	0	0	159.0	22.0	2.0	0.0	353.0	30.0	3.0	444.0	18.0	12.0	0	0
t	0	0	0	0	0	0.0	2.0	0.0	11.0	12.0	159.0	444.0	0.0	444.0	444.0	0	0
MA0819.1_shift5 (CLOCK) 
; positions_7nt_m4 versus MA0819.1 (CLOCK); m=31/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.529654; -----aACACGTGty--
; cor=; Ncor=
a	0	0	0	0	0	226.0	429.0	11.0	429.0	16.0	40.0	3.0	0.0	1.0	89.0	0	0
c	0	0	0	0	0	35.0	85.0	429.0	5.0	429.0	0.0	5.0	3.0	152.0	128.0	0	0
g	0	0	0	0	0	93.0	89.0	2.0	15.0	0.0	429.0	5.0	429.0	110.0	39.0	0	0
t	0	0	0	0	0	75.0	13.0	2.0	0.0	28.0	0.0	429.0	9.0	429.0	174.0	0	0
MA1635.1_shift5 (BHLHE22(var.2)) 
; positions_7nt_m4 versus MA1635.1 (BHLHE22(var.2)); m=32/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.529248; -----csCAGCTGsg--
; cor=; Ncor=
a	0	0	0	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0	0
c	0	0	0	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0	0
g	0	0	0	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0	0
t	0	0	0	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0	0
MA0626.1_rc_shift5 (Npas2_rc) 
; positions_7nt_m4 versus MA0626.1_rc (Npas2_rc); m=33/43; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.527233; -----kaCACGTGsh--
; cor=; Ncor=
a	0	0	0	0	0	202.0	566.0	0.0	999.0	0.0	0.0	0.0	0.0	48.0	257.0	0	0
c	0	0	0	0	0	202.0	188.0	918.0	0.0	918.0	0.0	0.0	0.0	420.0	293.0	0	0
g	0	0	0	0	0	299.0	172.0	0.0	0.0	0.0	918.0	0.0	999.0	377.0	177.0	0	0
t	0	0	0	0	0	297.0	74.0	81.0	0.0	81.0	81.0	999.0	0.0	154.0	273.0	0	0
MA0691.1_shift5 (TFAP4) 
; positions_7nt_m4 versus MA0691.1 (TFAP4); m=34/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.525373; -----AwCAGCTGwT--
; cor=; Ncor=
a	0	0	0	0	0	3423.0	2159.0	0.0	3423.0	2.0	21.0	1.0	0.0	1810.0	299.0	0	0
c	0	0	0	0	0	500.0	546.0	3423.0	2.0	85.0	3423.0	1.0	1.0	114.0	682.0	0	0
g	0	0	0	0	0	337.0	62.0	0.0	0.0	3423.0	49.0	0.0	3423.0	333.0	433.0	0	0
t	0	0	0	0	0	228.0	1264.0	0.0	0.0	14.0	6.0	3423.0	0.0	1613.0	3423.0	0	0
MA0048.2_rc_shift5 (NHLH1_rc) 
; positions_7nt_m4 versus MA0048.2_rc (NHLH1_rc); m=35/43; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.513667; -----mGCAGCTGCg--
; cor=; Ncor=
a	0	0	0	0	0	1489.0	350.0	1.0	2166.0	0.0	114.0	0.0	0.0	142.0	111.0	0	0
c	0	0	0	0	0	2166.0	102.0	2166.0	4.0	124.0	2166.0	1.0	0.0	2166.0	181.0	0	0
g	0	0	0	0	0	736.0	2166.0	4.0	4.0	2166.0	301.0	3.0	2166.0	179.0	2166.0	0	0
t	0	0	0	0	0	308.0	296.0	2.0	0.0	96.0	0.0	2166.0	3.0	461.0	788.0	0	0
MA1638.1_shift5 (HAND2) 
; positions_7nt_m4 versus MA1638.1 (HAND2); m=36/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.510011; -----amCAGATGby--
; cor=; Ncor=
a	0	0	0	0	0	10136.0	8836.0	19.0	29222.0	12.0	30192.0	14.0	234.0	5217.0	6165.0	0	0
c	0	0	0	0	0	5564.0	11298.0	30062.0	410.0	42.0	30.0	2276.0	149.0	7690.0	10227.0	0	0
g	0	0	0	0	0	7463.0	6994.0	132.0	647.0	30144.0	38.0	31.0	29851.0	8878.0	6108.0	0	0
t	0	0	0	0	0	7120.0	3155.0	70.0	4.0	85.0	23.0	27962.0	49.0	8498.0	7783.0	0	0
MA0100.3_rc_shift5 (MYB_rc) 
; positions_7nt_m4 versus MA0100.3_rc (MYB_rc); m=37/43; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.506271; -----kdCAGTTGvk--
; cor=; Ncor=
a	0	0	0	0	0	352.0	497.0	0.0	1398.0	0.0	6.0	7.0	9.0	410.0	380.0	0	0
c	0	0	0	0	0	225.0	147.0	1516.0	68.0	0.0	0.0	39.0	5.0	397.0	300.0	0	0
g	0	0	0	0	0	528.0	482.0	3.0	60.0	1527.0	2.0	3.0	1513.0	428.0	422.0	0	0
t	0	0	0	0	0	422.0	401.0	8.0	1.0	0.0	1519.0	1478.0	0.0	292.0	425.0	0	0
MA0825.1_shift5 (MNT) 
; positions_7nt_m4 versus MA0825.1 (MNT); m=38/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.504668; -----avCACGTGcy--
; cor=; Ncor=
a	0	0	0	0	0	279.0	187.0	27.0	681.0	0.0	15.0	0.0	0.0	150.0	159.0	0	0
c	0	0	0	0	0	128.0	228.0	681.0	0.0	681.0	0.0	0.0	0.0	281.0	229.0	0	0
g	0	0	0	0	0	145.0	203.0	0.0	0.0	7.0	681.0	15.0	681.0	131.0	75.0	0	0
t	0	0	0	0	0	129.0	63.0	5.0	21.0	16.0	0.0	681.0	25.0	120.0	219.0	0	0
MA0058.3_shift5 (MAX) 
; positions_7nt_m4 versus MA0058.3 (MAX); m=39/43; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.501992; -----amCACGTGcy--
; cor=; Ncor=
a	0	0	0	0	0	3307.0	1915.0	39.0	6876.0	0.0	329.0	69.0	0.0	1341.0	1122.0	0	0
c	0	0	0	0	0	1556.0	2809.0	6876.0	0.0	6876.0	39.0	159.0	27.0	2450.0	2225.0	0	0
g	0	0	0	0	0	1295.0	1514.0	0.0	87.0	7.0	6876.0	20.0	6876.0	1638.0	986.0	0	0
t	0	0	0	0	0	719.0	637.0	0.0	38.0	229.0	19.0	6876.0	36.0	1446.0	2543.0	0	0
MA0807.1_shift8 (TBX5) 
; positions_7nt_m4 versus MA0807.1 (TBX5); m=40/43; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.430224; --------AGGTGTkA-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	1804.0	235.0	0.0	45.0	27.0	162.0	126.0	1804.0	0
c	0	0	0	0	0	0	0	0	89.0	190.0	0.0	131.0	0.0	225.0	616.0	76.0	0
g	0	0	0	0	0	0	0	0	409.0	1804.0	1804.0	166.0	1804.0	201.0	1804.0	343.0	0
t	0	0	0	0	0	0	0	0	207.0	133.0	28.0	1804.0	0.0	1804.0	915.0	283.0	0
MA0622.1_rc_shift6 (Mlxip_rc) 
; positions_7nt_m4 versus MA0622.1_rc (Mlxip_rc); m=41/43; ncol2=8; w=8; offset=3; strand=R; shift=6; score=0.428702; ------mCACGTGv---
; cor=; Ncor=
a	0	0	0	0	0	0	499.0	0.0	999.0	0.0	0.0	0.0	0.0	263.0	0	0	0
c	0	0	0	0	0	0	250.0	999.0	0.0	999.0	0.0	0.0	0.0	421.0	0	0	0
g	0	0	0	0	0	0	63.0	0.0	0.0	0.0	999.0	0.0	999.0	263.0	0	0	0
t	0	0	0	0	0	0	188.0	0.0	0.0	0.0	0.0	999.0	0.0	53.0	0	0	0
MA0806.1_shift8 (TBX4) 
; positions_7nt_m4 versus MA0806.1 (TBX4); m=42/43; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.425817; --------AGGTGTgA-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	18646.0	3082.0	38.0	0.0	0.0	1551.0	1355.0	18646.0	0
c	0	0	0	0	0	0	0	0	437.0	2328.0	189.0	1644.0	0.0	2859.0	5396.0	588.0	0
g	0	0	0	0	0	0	0	0	2353.0	18646.0	18646.0	191.0	18646.0	304.0	18646.0	1733.0	0
t	0	0	0	0	0	0	0	0	1283.0	1162.0	33.0	18646.0	0.0	18646.0	8384.0	965.0	0
MA0803.1_shift8 (TBX15) 
; positions_7nt_m4 versus MA0803.1 (TBX15); m=43/43; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.401752; --------AGGTGTGA-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	10502.0	458.0	19.0	61.0	0.0	140.0	44.0	10502.0	0
c	0	0	0	0	0	0	0	0	74.0	101.0	7.0	175.0	8.0	435.0	454.0	71.0	0
g	0	0	0	0	0	0	0	0	664.0	10502.0	10502.0	245.0	10502.0	324.0	10502.0	306.0	0
t	0	0	0	0	0	0	0	0	112.0	103.0	0.0	10502.0	0.0	10502.0	937.0	96.0	0