compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m15/peak-motifs_positions_8nt_m15.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m15/peak-motifs_positions_8nt_m15_vs_db_jaspar_core_nonredundant_vertebrates Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m15/peak-motifs_positions_8nt_m15.tf Output files alignments_1ton Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m15/peak-motifs_positions_8nt_m15_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab match_table_txt Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m15/peak-motifs_positions_8nt_m15_vs_db_jaspar_core_nonredundant_vertebrates.tab html_index Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m15/peak-motifs_positions_8nt_m15_vs_db_jaspar_core_nonredundant_vertebrates_index.html alignments_1ton_html Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m15/peak-motifs_positions_8nt_m15_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html match_table_html Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m15/peak-motifs_positions_8nt_m15_vs_db_jaspar_core_nonredundant_vertebrates.html prefix Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m15/peak-motifs_positions_8nt_m15_vs_db_jaspar_core_nonredundant_vertebrates Matrices file1 1 matrices Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m15/peak-motifs_positions_8nt_m15.tf file1 1 16 1408 file2 746 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf file2 1 6 24 file2 2 17 100 file2 3 10 9897 file2 4 17 101 file2 5 17 3851 file2 6 10 25318 file2 7 6 27 file2 8 11 1001 file2 9 14 101 file2 10 6 20 file2 11 8 104 ... 736 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| positions_8nt_m15 | MA0832.1 | positions_8nt_m15positions_8nt_m15 | Tcf21 | 0.854 | 0.747 | 16 | 14 | 14 | 16 | 0.8750 | 0.8750 | 1.0000 | D | 1 |
| positions_8nt_m15 | MA1641.1 | positions_8nt_m15positions_8nt_m15 | MYF5 | 0.900 | 0.675 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | R | 2 |
| positions_8nt_m15 | MA1621.1 | positions_8nt_m15positions_8nt_m15 | Rbpjl | 0.755 | 0.661 | 16 | 14 | 14 | 16 | 0.8750 | 0.8750 | 1.0000 | R | 1 |
| positions_8nt_m15 | MA1619.1 | positions_8nt_m15positions_8nt_m15 | Ptf1a(var.2) | 0.878 | 0.658 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | R | 2 |
| positions_8nt_m15 | MA1485.1 | positions_8nt_m15positions_8nt_m15 | FERD3L | 0.736 | 0.644 | 16 | 14 | 14 | 16 | 0.8750 | 0.8750 | 1.0000 | D | 1 |
| positions_8nt_m15 | MA1618.1 | positions_8nt_m15positions_8nt_m15 | Ptf1a | 0.779 | 0.633 | 16 | 13 | 13 | 16 | 0.8125 | 0.8125 | 1.0000 | D | 2 |
| positions_8nt_m15 | MA0500.2 | positions_8nt_m15positions_8nt_m15 | MYOG | 0.819 | 0.614 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | D | 2 |
| positions_8nt_m15 | MA1467.1 | positions_8nt_m15positions_8nt_m15 | ATOH1(var.2) | 0.980 | 0.612 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_8nt_m15 | MA0499.2 | positions_8nt_m15positions_8nt_m15 | MYOD1 | 0.745 | 0.605 | 16 | 13 | 13 | 16 | 0.8125 | 0.8125 | 1.0000 | R | 1 |
| positions_8nt_m15 | MA0521.1 | positions_8nt_m15positions_8nt_m15 | Tcf12 | 0.848 | 0.583 | 16 | 11 | 11 | 16 | 0.6875 | 0.6875 | 1.0000 | R | 2 |
| positions_8nt_m15 | MA0665.1 | positions_8nt_m15positions_8nt_m15 | MSC | 0.929 | 0.581 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | D | 3 |
| positions_8nt_m15 | MA1655.1 | positions_8nt_m15positions_8nt_m15 | ZNF341 | 0.768 | 0.576 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | R | 4 |
| positions_8nt_m15 | MA1620.1 | positions_8nt_m15positions_8nt_m15 | Ptf1a(var.3) | 0.766 | 0.575 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | D | 2 |
| positions_8nt_m15 | MA0667.1 | positions_8nt_m15positions_8nt_m15 | MYF6 | 0.912 | 0.570 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_8nt_m15 | MA1472.1 | positions_8nt_m15positions_8nt_m15 | BHLHA15(var.2) | 0.894 | 0.558 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_8nt_m15 | MA0091.1 | positions_8nt_m15positions_8nt_m15 | TAL1::TCF3 | 0.739 | 0.555 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | R | 3 |
| positions_8nt_m15 | MA0691.1 | positions_8nt_m15positions_8nt_m15 | TFAP4 | 0.877 | 0.548 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_8nt_m15 | MA0796.1 | positions_8nt_m15positions_8nt_m15 | TGIF1 | 0.726 | 0.544 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | R | 2 |
| positions_8nt_m15 | MA1571.1 | positions_8nt_m15positions_8nt_m15 | TGIF2LX | 0.717 | 0.538 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | D | 2 |
| positions_8nt_m15 | MA0816.1 | positions_8nt_m15positions_8nt_m15 | Ascl2 | 0.855 | 0.534 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_8nt_m15 | MA0797.1 | positions_8nt_m15positions_8nt_m15 | TGIF2 | 0.705 | 0.529 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | R | 2 |
| positions_8nt_m15 | MA1572.1 | positions_8nt_m15positions_8nt_m15 | TGIF2LY | 0.702 | 0.527 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | D | 2 |
| positions_8nt_m15 | MA1635.1 | positions_8nt_m15positions_8nt_m15 | BHLHE22(var.2) | 0.814 | 0.509 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_8nt_m15 | MA1100.2 | positions_8nt_m15positions_8nt_m15 | ASCL1 | 0.796 | 0.498 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_8nt_m15 | MA0820.1 | positions_8nt_m15positions_8nt_m15 | FIGLA | 0.769 | 0.481 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_8nt_m15 | MA0048.2 | positions_8nt_m15positions_8nt_m15 | NHLH1 | 0.704 | 0.440 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | D | 3 |
| positions_8nt_m15 | MA1570.1 | positions_8nt_m15positions_8nt_m15 | TFAP4(var.2) | 0.700 | 0.438 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_8nt_m15 | MA0774.1 | positions_8nt_m15positions_8nt_m15 | MEIS2 | 0.813 | 0.406 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | D | 1 |
Host name pedagogix Job started 2020-04-14.170214 Job done 2020-04-14.170239 Seconds 3.64 user 3.64 system 0.42 cuser 19.5 ; csystem 1.38