One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m16/peak-motifs_positions_8nt_m16.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m16/peak-motifs_positions_8nt_m16_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m16_shift3 ; 20 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_8nt_m16_shift3 (positions_8nt_m16positions_8nt_m16)     
; positions_8nt_m16 (positions_8nt_m16positions_8nt_m16); m=0 (reference); ncol1=14; shift=3; ncol=17; ---rsAGCAGGTGCAgs
; Alignment reference
a	0	0	0	860	465	2730	217	18	2879	30	65	86	9	39	2437	490	694
c	0	0	0	518	1191	43	45	2939	14	24	738	33	29	2750	182	641	855
g	0	0	0	1184	1005	160	2714	20	19	2884	2153	78	2925	151	77	1413	839
t	0	0	0	423	324	52	9	8	73	47	29	2788	22	45	289	441	597
MA1631.1_rc_shift3 (ASCL1(var.2)_rc) 
; positions_8nt_m16 versus MA1631.1_rc (ASCL1(var.2)_rc); m=1/19; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.815192; ---gsrGCAGGTGchg-
; cor=; Ncor=
a	0	0	0	8032.0	7779.0	9017.0	2394.0	249.0	32756.0	151.0	815.0	618.0	289.0	3290.0	8805.0	7347.0	0
c	0	0	0	8356.0	8939.0	2966.0	2719.0	33411.0	492.0	607.0	3209.0	860.0	321.0	18576.0	8601.0	8371.0	0
g	0	0	0	11996.0	10555.0	17883.0	28844.0	445.0	740.0	33402.0	30169.0	563.0	33562.0	6654.0	7998.0	11805.0	0
t	0	0	0	5972.0	7083.0	4490.0	399.0	251.0	368.0	196.0	163.0	32315.0	184.0	5836.0	8952.0	6833.0	0
MA0830.2_rc_shift3 (TCF4_rc) 
; positions_8nt_m16 versus MA0830.2_rc (TCF4_rc); m=2/19; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.805649; ---ssggCAGGTGccg-
; cor=; Ncor=
a	0	0	0	6827.0	6430.0	6126.0	3555.0	242.0	27398.0	188.0	751.0	512.0	215.0	1737.0	7059.0	6225.0	0
c	0	0	0	7662.0	7964.0	4933.0	5281.0	28432.0	679.0	1197.0	1733.0	1295.0	321.0	18498.0	8618.0	7140.0	0
g	0	0	0	9843.0	8658.0	12872.0	18935.0	540.0	1016.0	27724.0	26765.0	635.0	28686.0	5062.0	6754.0	10052.0	0
t	0	0	0	5133.0	6413.0	5534.0	1694.0	251.0	372.0	356.0	216.0	27023.0	243.0	4168.0	7034.0	6048.0	0
MA0745.2_rc_shift3 (SNAI2_rc) 
; positions_8nt_m16 versus MA0745.2_rc (SNAI2_rc); m=3/19; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.711391; ---rykACAGGTGcrt-
; cor=; Ncor=
a	0	0	0	17906.0	8917.0	8747.0	37272.0	126.0	45229.0	344.0	234.0	227.0	622.0	2359.0	16344.0	9958.0	0
c	0	0	0	8219.0	12297.0	6281.0	1263.0	45257.0	196.0	487.0	326.0	424.0	323.0	26742.0	9490.0	11169.0	0
g	0	0	0	13476.0	11016.0	18771.0	6467.0	254.0	313.0	44739.0	45144.0	202.0	44463.0	6393.0	12314.0	10031.0	0
t	0	0	0	6215.0	13586.0	12017.0	814.0	179.0	78.0	246.0	112.0	44963.0	408.0	10322.0	7668.0	14658.0	0
MA0499.2_rc_shift3 (MYOD1_rc) 
; positions_8nt_m16 versus MA0499.2_rc (MYOD1_rc); m=4/19; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.706784; ---rkrACAGGTGcwg-
; cor=; Ncor=
a	0	0	0	9358.0	8151.0	9000.0	29644.0	238.0	33130.0	330.0	1226.0	587.0	269.0	2245.0	9291.0	7728.0	0
c	0	0	0	7495.0	6202.0	4440.0	1699.0	33468.0	366.0	932.0	7336.0	849.0	354.0	21884.0	8444.0	8118.0	0
g	0	0	0	11760.0	10485.0	19052.0	2555.0	386.0	563.0	32504.0	25275.0	583.0	33328.0	5622.0	7103.0	11279.0	0
t	0	0	0	5687.0	9462.0	1808.0	402.0	208.0	241.0	534.0	463.0	32281.0	349.0	4549.0	9462.0	7175.0	0
MA1648.1_rc_shift4 (TCF12(var.2)_rc) 
; positions_8nt_m16 versus MA1648.1_rc (TCF12(var.2)_rc); m=5/19; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.663345; ----srGCAGGTGss--
; cor=; Ncor=
a	0	0	0	0	12248.0	16113.0	3412.0	1047.0	53985.0	662.0	1754.0	1733.0	1887.0	10887.0	12473.0	0	0
c	0	0	0	0	20060.0	14293.0	2314.0	55922.0	2625.0	3536.0	3780.0	5607.0	1186.0	18560.0	16996.0	0	0
g	0	0	0	0	18154.0	17603.0	55061.0	2088.0	3886.0	55765.0	55598.0	2007.0	57848.0	17594.0	19393.0	0	0
t	0	0	0	0	11414.0	13867.0	1089.0	2819.0	1380.0	1913.0	744.0	52529.0	955.0	14835.0	13014.0	0	0
MA0522.3_rc_shift4 (TCF3_rc) 
; positions_8nt_m16 versus MA0522.3_rc (TCF3_rc); m=6/19; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.657181; ----ssGCAGGTGbs--
; cor=; Ncor=
a	0	0	0	0	6432.0	7233.0	1237.0	492.0	27539.0	283.0	950.0	375.0	705.0	4528.0	6240.0	0	0
c	0	0	0	0	9222.0	8025.0	987.0	28642.0	1339.0	2652.0	1362.0	1574.0	708.0	9432.0	8539.0	0	0
g	0	0	0	0	10122.0	8727.0	28742.0	1038.0	2003.0	27199.0	28640.0	396.0	29379.0	9269.0	10212.0	0	0
t	0	0	0	0	5485.0	7276.0	295.0	1089.0	380.0	1127.0	309.0	28916.0	469.0	8032.0	6270.0	0	0
MA0500.2_rc_shift4 (MYOG_rc) 
; positions_8nt_m16 versus MA0500.2_rc (MYOG_rc); m=7/19; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.655545; ----sarCAGCTGyts-
; cor=; Ncor=
a	0	0	0	0	5310.0	8475.0	7192.0	88.0	21777.0	95.0	169.0	163.0	182.0	1678.0	4692.0	5070.0	0
c	0	0	0	0	6369.0	3718.0	2706.0	21985.0	179.0	131.0	21963.0	236.0	101.0	10790.0	5483.0	5596.0	0
g	0	0	0	0	5660.0	5497.0	10792.0	102.0	238.0	21964.0	130.0	176.0	21988.0	2730.0	3754.0	6381.0	0
t	0	0	0	0	5018.0	4667.0	1667.0	182.0	163.0	167.0	95.0	21782.0	86.0	7159.0	8428.0	5310.0	0
MA1559.1_shift5 (SNAI3) 
; positions_8nt_m16 versus MA1559.1 (SNAI3); m=8/19; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.632644; -----arCAGGTGya--
; cor=; Ncor=
a	0	0	0	0	0	2952.0	3917.0	23.0	6248.0	118.0	0.0	0.0	94.0	432.0	4680.0	0	0
c	0	0	0	0	0	661.0	0.0	6248.0	0.0	29.0	18.0	12.0	0.0	6248.0	688.0	0	0
g	0	0	0	0	0	1525.0	2331.0	0.0	34.0	6248.0	6248.0	28.0	6248.0	1701.0	1569.0	0	0
t	0	0	0	0	0	1110.0	183.0	35.0	3.0	43.0	0.0	6248.0	30.0	3161.0	553.0	0	0
MA0103.3_rc_shift4 (ZEB1_rc) 
; positions_8nt_m16 versus MA0103.3_rc (ZEB1_rc); m=9/19; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.61394; ----sssCAGGTGss--
; cor=; Ncor=
a	0	0	0	0	3856.0	3153.0	3408.0	129.0	19269.0	30.0	122.0	1.0	662.0	4715.0	3692.0	0	0
c	0	0	0	0	5828.0	6601.0	5178.0	19381.0	355.0	649.0	97.0	223.0	158.0	5179.0	5228.0	0	0
g	0	0	0	0	6955.0	6117.0	9561.0	178.0	501.0	19257.0	19878.0	0.0	19195.0	5550.0	7998.0	0	0
t	0	0	0	0	3490.0	4258.0	1982.0	441.0	4.0	193.0	32.0	19905.0	114.0	4685.0	3211.0	0	0
MA0521.1_shift5 (Tcf12) 
; positions_8nt_m16 versus MA0521.1 (Tcf12); m=10/19; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.611577; -----rRCAGCTGswg-
; cor=; Ncor=
a	0	0	0	0	0	6170.0	8820.0	0.0	12895.0	8.0	184.0	0.0	0.0	1875.0	3912.0	2863.0	0
c	0	0	0	0	0	1585.0	124.0	12895.0	0.0	0.0	10822.0	0.0	0.0	5527.0	2416.0	3005.0	0
g	0	0	0	0	0	5123.0	3951.0	0.0	0.0	12887.0	1889.0	0.0	12895.0	3811.0	2925.0	4836.0	0
t	0	0	0	0	0	17.0	0.0	0.0	0.0	0.0	0.0	12895.0	0.0	1682.0	3642.0	2191.0	0
MA1558.1_shift5 (SNAI1) 
; positions_8nt_m16 versus MA1558.1 (SNAI1); m=11/19; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.605804; -----drCAGGTGyr--
; cor=; Ncor=
a	0	0	0	0	0	5274.0	6993.0	446.0	19982.0	1766.0	72.0	38.0	706.0	1639.0	10088.0	0	0
c	0	0	0	0	0	3187.0	501.0	19982.0	297.0	517.0	5.0	0.0	0.0	10938.0	4592.0	0	0
g	0	0	0	0	0	6410.0	12989.0	275.0	91.0	19982.0	19982.0	42.0	19982.0	5306.0	9894.0	0	0
t	0	0	0	0	0	5112.0	3518.0	340.0	568.0	306.0	28.0	19982.0	311.0	9044.0	6356.0	0	0
MA1100.2_shift5 (ASCL1) 
; positions_8nt_m16 versus MA1100.2 (ASCL1); m=12/19; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.583202; -----rrCAGCTGcy--
; cor=; Ncor=
a	0	0	0	0	0	1267.0	1334.0	0.0	4413.0	107.0	729.0	118.0	52.0	177.0	843.0	0	0
c	0	0	0	0	0	926.0	521.0	4413.0	157.0	1288.0	4413.0	24.0	0.0	3065.0	1487.0	0	0
g	0	0	0	0	0	1495.0	3079.0	0.0	60.0	4413.0	1320.0	121.0	4413.0	814.0	889.0	0	0
t	0	0	0	0	0	726.0	354.0	14.0	218.0	625.0	20.0	4413.0	29.0	1349.0	1194.0	0	0
MA0816.1_shift5 (Ascl2) 
; positions_8nt_m16 versus MA0816.1 (Ascl2); m=13/19; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.561801; -----arCAGCTGyy--
; cor=; Ncor=
a	0	0	0	0	0	237.0	128.0	3.0	300.0	7.0	3.0	4.0	0.0	6.0	34.0	0	0
c	0	0	0	0	0	36.0	41.0	300.0	0.0	23.0	300.0	0.0	1.0	206.0	101.0	0	0
g	0	0	0	0	0	63.0	172.0	0.0	0.0	300.0	2.0	0.0	300.0	15.0	28.0	0	0
t	0	0	0	0	0	16.0	1.0	1.0	15.0	18.0	1.0	300.0	2.0	94.0	199.0	0	0
MA0048.2_rc_shift5 (NHLH1_rc) 
; positions_8nt_m16 versus MA0048.2_rc (NHLH1_rc); m=14/19; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.55751; -----mGCAGCTGCg--
; cor=; Ncor=
a	0	0	0	0	0	1489.0	350.0	1.0	2166.0	0.0	114.0	0.0	0.0	142.0	111.0	0	0
c	0	0	0	0	0	2166.0	102.0	2166.0	4.0	124.0	2166.0	1.0	0.0	2166.0	181.0	0	0
g	0	0	0	0	0	736.0	2166.0	4.0	4.0	2166.0	301.0	3.0	2166.0	179.0	2166.0	0	0
t	0	0	0	0	0	308.0	296.0	2.0	0.0	96.0	0.0	2166.0	3.0	461.0	788.0	0	0
MA1628.1_shift2 (Zic1::Zic2) 
; positions_8nt_m16 versus MA1628.1 (Zic1::Zic2); m=15/19; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.539581; --cvCAGCAGGsr----
; cor=; Ncor=
a	0	0	2072.0	3057.0	29.0	9238.0	96.0	75.0	8950.0	11.0	46.0	2429.0	2524.0	0	0	0	0
c	0	0	4620.0	2589.0	9594.0	384.0	195.0	9293.0	311.0	512.0	91.0	2516.0	2154.0	0	0	0	0
g	0	0	2206.0	2773.0	106.0	266.0	9527.0	96.0	627.0	9279.0	9631.0	2775.0	3506.0	0	0	0	0
t	0	0	994.0	1473.0	163.0	4.0	74.0	428.0	4.0	90.0	124.0	2172.0	1708.0	0	0	0	0
MA0820.1_rc_shift5 (FIGLA_rc) 
; positions_8nt_m16 versus MA0820.1_rc (FIGLA_rc); m=16/19; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.530298; -----wmCAGGTGkw--
; cor=; Ncor=
a	0	0	0	0	0	753.0	832.0	65.0	1780.0	0.0	0.0	14.0	29.0	237.0	449.0	0	0
c	0	0	0	0	0	289.0	569.0	1780.0	17.0	311.0	527.0	0.0	0.0	160.0	175.0	0	0
g	0	0	0	0	0	283.0	225.0	33.0	0.0	1780.0	1780.0	46.0	1780.0	693.0	270.0	0	0
t	0	0	0	0	0	455.0	154.0	36.0	56.0	9.0	0.0	1780.0	0.0	690.0	886.0	0	0
MA1635.1_rc_shift5 (BHLHE22(var.2)_rc) 
; positions_8nt_m16 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=17/19; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.517858; -----csCAGCTGsg--
; cor=; Ncor=
a	0	0	0	0	0	3886.0	4449.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4402.0	0	0
c	0	0	0	0	0	5625.0	5112.0	18327.0	37.0	53.0	18288.0	52.0	11.0	7267.0	4447.0	0	0
g	0	0	0	0	0	4447.0	7269.0	15.0	52.0	18288.0	53.0	37.0	18331.0	5110.0	5621.0	0	0
t	0	0	0	0	0	4398.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4453.0	3886.0	0	0
MA1472.1_shift5 (BHLHA15(var.2)) 
; positions_8nt_m16 versus MA1472.1 (BHLHA15(var.2)); m=18/19; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.505348; -----avCAGCTGyy--
; cor=; Ncor=
a	0	0	0	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0	0	0
c	0	0	0	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0	0	0
g	0	0	0	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0	0	0
t	0	0	0	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0	0	0
MA1629.1_shift0 (Zic2) 
; positions_8nt_m16 versus MA1629.1 (Zic2); m=19/19; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.479208; mkCaCAGCAGGrrg---
; cor=; Ncor=
a	3145.0	2450.0	1161.0	6888.0	135.0	11074.0	140.0	80.0	10625.0	192.0	96.0	3060.0	3638.0	2333.0	0	0	0
c	3507.0	1755.0	9933.0	1765.0	11476.0	391.0	228.0	11272.0	118.0	133.0	204.0	1476.0	1661.0	2168.0	0	0	0
g	2761.0	3821.0	585.0	829.0	188.0	186.0	11484.0	269.0	735.0	11184.0	11465.0	4911.0	4979.0	5314.0	0	0	0
t	2506.0	3893.0	240.0	2437.0	120.0	268.0	67.0	298.0	441.0	410.0	154.0	2472.0	1641.0	2104.0	0	0	0