| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| positions_8nt_m17_shift0 (positions_8nt_m17positions_8nt_m17) |
 |
|
|
; positions_8nt_m17 (positions_8nt_m17positions_8nt_m17); m=0 (reference); ncol1=15; shift=0; ncol=15; sstGCCAGCTGCgss
; Alignment reference
a 497 412 383 12 95 8 2166 5 7 16 19 57 312 406 435
c 658 853 353 28 2084 2236 45 25 2260 32 30 2089 491 714 718
g 673 654 527 2231 87 34 59 2245 18 28 2226 74 932 753 677
t 460 369 1025 17 22 10 18 13 3 2212 13 68 553 415 458
|
| MA0500.2_shift2 (MYOG) |
 |
|
|
; positions_8nt_m17 versus MA0500.2 (MYOG); m=1/18; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.651492; --sarCAGCTGyts-
; cor=; Ncor=
a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0
c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0
g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0
t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0
|
| MA1109.1_rc_shift1 (NEUROD1_rc) |
 |
|
|
; positions_8nt_m17 versus MA1109.1_rc (NEUROD1_rc); m=2/18; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.628481; -syrCCATCTGtyc-
; cor=; Ncor=
a 0 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0
c 0 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0
g 0 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0
t 0 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0
|
| MA0499.2_rc_shift1 (MYOD1_rc) |
 |
|
|
; positions_8nt_m17 versus MA0499.2_rc (MYOD1_rc); m=3/18; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.627374; -rkrACAGGTGcwg-
; cor=; Ncor=
a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0
c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0
g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0
t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0
|
| MA0830.2_rc_shift1 (TCF4_rc) |
 |
|
|
; positions_8nt_m17 versus MA0830.2_rc (TCF4_rc); m=4/18; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.608918; -ssggCAGGTGccg-
; cor=; Ncor=
a 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0
c 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0
g 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0
t 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0
|
| MA1619.1_shift2 (Ptf1a(var.2)) |
 |
|
|
; positions_8nt_m17 versus MA1619.1 (Ptf1a(var.2)); m=5/18; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.606969; --rmaCAGCTGtky-
; cor=; Ncor=
a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0
c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0
g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0
t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
|
| MA1641.1_rc_shift2 (MYF5_rc) |
 |
|
|
; positions_8nt_m17 versus MA1641.1_rc (MYF5_rc); m=6/18; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.599219; --gvaCAGCTGtbc-
; cor=; Ncor=
a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0
c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0
g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0
t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0
|
| MA0521.1_shift3 (Tcf12) |
 |
|
|
; positions_8nt_m17 versus MA0521.1 (Tcf12); m=7/18; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.581416; ---rRCAGCTGswg-
; cor=; Ncor=
a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0
c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0
g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0
t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
|
| MA1635.1_shift3 (BHLHE22(var.2)) |
 |
|
|
; positions_8nt_m17 versus MA1635.1 (BHLHE22(var.2)); m=8/18; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.566047; ---csCAGCTGsg--
; cor=; Ncor=
a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0
c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0
g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0
t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
|
| MA1100.2_rc_shift3 (ASCL1_rc) |
 |
|
|
; positions_8nt_m17 versus MA1100.2_rc (ASCL1_rc); m=9/18; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.550651; ---rgCAGCTGyy--
; cor=; Ncor=
a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0
c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0
g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0
t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0
|
| MA1648.1_shift3 (TCF12(var.2)) |
 |
|
|
; positions_8nt_m17 versus MA1648.1 (TCF12(var.2)); m=10/18; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.532561; ---ssCACCTGCys-
; cor=; Ncor=
a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0
c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0
g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0
t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0
|
| MA1628.1_rc_shift2 (Zic1::Zic2_rc) |
 |
|
|
; positions_8nt_m17 versus MA1628.1_rc (Zic1::Zic2_rc); m=11/18; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.531599; --ysCCTGCTGbg--
; cor=; Ncor=
a 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 0
c 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 0
g 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 0
t 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0 0
|
| MA0522.3_shift3 (TCF3) |
 |
|
|
; positions_8nt_m17 versus MA0522.3 (TCF3); m=12/18; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.53138; ---svCACCTGCss-
; cor=; Ncor=
a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0
c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0
g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0
t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0
|
| MA1472.1_shift3 (BHLHA15(var.2)) |
 |
|
|
; positions_8nt_m17 versus MA1472.1 (BHLHA15(var.2)); m=13/18; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.525393; ---avCAGCTGyy--
; cor=; Ncor=
a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0
c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0
g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0
t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0
|
| MA0816.1_shift3 (Ascl2) |
 |
|
|
; positions_8nt_m17 versus MA0816.1 (Ascl2); m=14/18; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.522481; ---arCAGCTGyy--
; cor=; Ncor=
a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0
c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0
g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0
t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
|
| MA0048.2_rc_shift3 (NHLH1_rc) |
 |
|
|
; positions_8nt_m17 versus MA0048.2_rc (NHLH1_rc); m=15/18; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.521799; ---mGCAGCTGCg--
; cor=; Ncor=
a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0
c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0
g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0
t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0
|
| MA1467.1_rc_shift3 (ATOH1(var.2)_rc) |
 |
|
|
; positions_8nt_m17 versus MA1467.1_rc (ATOH1(var.2)_rc); m=16/18; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.495879; ---RACAGCTGTT--
; cor=; Ncor=
a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0
c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0
g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0
t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0
|
| MA0671.1_shift0 (NFIX) |
 |
|
|
; positions_8nt_m17 versus MA0671.1 (NFIX); m=17/18; ncol2=9; w=9; offset=0; strand=D; shift=0; score=0.460096; sgtGCCArv------
; cor=; Ncor=
a 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 0 0 0 0 0 0
c 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 0 0 0 0 0 0
g 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 0 0 0 0 0 0
t 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0 0 0 0 0 0 0
|
| MA0739.1_shift1 (Hic1) |
 |
|
|
; positions_8nt_m17 versus MA0739.1 (Hic1); m=18/18; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.432591; -rTGCCAaCc-----
; cor=; Ncor=
a 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 0 0 0 0
c 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 0 0 0 0
g 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 0 0 0 0
t 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0 0 0 0 0
|