RSAT - compare-matrices result

Analysis: result (14/04/2020 17:03)

Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m17/peak-motifs_positions_8nt_m17.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m17/peak-motifs_positions_8nt_m17_vs_db_jaspar_core_nonredundant_vertebrates

Input files

Type	File
file1	peak-motifs_positions_8nt_m17.tf
file2	/data/rsat/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf

Output files

Type	File
match_table_txt	peak-motifs_positions_8nt_m17_vs_db_jaspar_core_nonredundant_vertebrates.tab
match_table_html	peak-motifs_positions_8nt_m17_vs_db_jaspar_core_nonredundant_vertebrates.html
alignments_1ton	peak-motifs_positions_8nt_m17_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
alignments_1ton_html	peak-motifs_positions_8nt_m17_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html

Directories

Type	Directory
output	.
aligned_logos	peak-motifs_positions_8nt_m17_vs_db_jaspar_core_nonredundant_vertebrates_aligned_logos