One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m19/peak-motifs_positions_8nt_m19.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m19/peak-motifs_positions_8nt_m19_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m19_shift0 ; 14 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_8nt_m19_shift0 (positions_8nt_m19positions_8nt_m19)     
; positions_8nt_m19 (positions_8nt_m19positions_8nt_m19); m=0 (reference); ncol1=17; shift=0; ncol=17; sstGCCAGCTGCCtssb
; Alignment reference
a	336	336	285	69	124	10	1593	20	27	21	7	14	26	220	218	282	278
c	468	623	196	97	1444	1687	33	49	1660	24	24	1547	1617	198	436	623	508
g	581	438	275	1504	105	10	26	1611	25	11	1664	54	24	142	785	464	481
t	335	323	964	50	47	13	68	40	8	1664	25	105	53	1160	281	351	453
MA0500.2_shift2 (MYOG) 
; positions_8nt_m19 versus MA0500.2 (MYOG); m=1/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.546426; --sarCAGCTGyts---
; cor=; Ncor=
a	0	0	5310.0	8428.0	7159.0	86.0	21782.0	95.0	167.0	163.0	182.0	1667.0	4667.0	5018.0	0	0	0
c	0	0	6381.0	3754.0	2730.0	21988.0	176.0	130.0	21964.0	238.0	102.0	10792.0	5497.0	5660.0	0	0	0
g	0	0	5596.0	5483.0	10790.0	101.0	236.0	21963.0	131.0	179.0	21985.0	2706.0	3718.0	6369.0	0	0	0
t	0	0	5070.0	4692.0	1678.0	182.0	163.0	169.0	95.0	21777.0	88.0	7192.0	8475.0	5310.0	0	0	0
MA1109.1_rc_shift1 (NEUROD1_rc) 
; positions_8nt_m19 versus MA1109.1_rc (NEUROD1_rc); m=2/13; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.546154; -syrCCATCTGtyc---
; cor=; Ncor=
a	0	525.0	451.0	580.0	168.0	31.0	2157.0	21.0	90.0	18.0	12.0	47.0	298.0	566.0	0	0	0
c	0	628.0	599.0	418.0	1962.0	2231.0	19.0	77.0	2152.0	16.0	13.0	494.0	906.0	726.0	0	0	0
g	0	591.0	540.0	911.0	93.0	7.0	51.0	150.0	24.0	7.0	2240.0	452.0	323.0	429.0	0	0	0
t	0	538.0	692.0	373.0	59.0	13.0	55.0	2034.0	16.0	2241.0	17.0	1289.0	755.0	561.0	0	0	0
MA1631.1_shift2 (ASCL1(var.2)) 
; positions_8nt_m19 versus MA1631.1 (ASCL1(var.2)); m=3/13; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.54334; --cdgCACCTGCysc--
; cor=; Ncor=
a	0	0	6833.0	8952.0	5836.0	184.0	32315.0	163.0	196.0	368.0	251.0	399.0	4490.0	7083.0	5972.0	0	0
c	0	0	11805.0	7998.0	6654.0	33562.0	563.0	30169.0	33402.0	740.0	445.0	28844.0	17883.0	10555.0	11996.0	0	0
g	0	0	8371.0	8601.0	18576.0	321.0	860.0	3209.0	607.0	492.0	33411.0	2719.0	2966.0	8939.0	8356.0	0	0
t	0	0	7347.0	8805.0	3290.0	289.0	618.0	815.0	151.0	32756.0	249.0	2394.0	9017.0	7779.0	8032.0	0	0
MA1619.1_shift2 (Ptf1a(var.2)) 
; positions_8nt_m19 versus MA1619.1 (Ptf1a(var.2)); m=4/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.506135; --rmaCAGCTGtky---
; cor=; Ncor=
a	0	0	1869.0	1978.0	4346.0	49.0	7119.0	34.0	224.0	26.0	27.0	535.0	1221.0	1602.0	0	0	0
c	0	0	1803.0	2430.0	1070.0	7149.0	41.0	307.0	6697.0	66.0	27.0	1312.0	1632.0	1977.0	0	0	0
g	0	0	1974.0	1629.0	1308.0	28.0	65.0	6689.0	299.0	40.0	7150.0	1065.0	2426.0	1803.0	0	0	0
t	0	0	1607.0	1216.0	529.0	27.0	28.0	223.0	33.0	7121.0	49.0	4341.0	1974.0	1871.0	0	0	0
MA1641.1_shift2 (MYF5) 
; positions_8nt_m19 versus MA1641.1 (MYF5); m=5/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.505772; --gvaCAGCTGtbc---
; cor=; Ncor=
a	0	0	2698.0	3507.0	7490.0	95.0	10965.0	100.0	223.0	129.0	42.0	578.0	1572.0	2554.0	0	0	0
c	0	0	2700.0	2986.0	1368.0	10911.0	47.0	230.0	10657.0	68.0	161.0	1775.0	3146.0	3258.0	0	0	0
g	0	0	3258.0	3145.0	1774.0	161.0	69.0	10658.0	230.0	47.0	10912.0	1368.0	2985.0	2701.0	0	0	0
t	0	0	2554.0	1572.0	578.0	43.0	129.0	222.0	100.0	10966.0	95.0	7489.0	3507.0	2697.0	0	0	0
MA0521.1_rc_shift2 (Tcf12_rc) 
; positions_8nt_m19 versus MA0521.1_rc (Tcf12_rc); m=6/13; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.50295; --cwsCAGCTGYy----
; cor=; Ncor=
a	0	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0	0	0
c	0	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0	0	0
g	0	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0	0	0
t	0	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0	0	0
MA1100.2_rc_shift3 (ASCL1_rc) 
; positions_8nt_m19 versus MA1100.2_rc (ASCL1_rc); m=7/13; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.484527; ---rgCAGCTGyy----
; cor=; Ncor=
a	0	0	0	1194.0	1349.0	29.0	4413.0	20.0	625.0	218.0	14.0	354.0	726.0	0	0	0	0
c	0	0	0	889.0	814.0	4413.0	121.0	1320.0	4413.0	60.0	0.0	3079.0	1495.0	0	0	0	0
g	0	0	0	1487.0	3065.0	0.0	24.0	4413.0	1288.0	157.0	4413.0	521.0	926.0	0	0	0	0
t	0	0	0	843.0	177.0	52.0	118.0	729.0	107.0	4413.0	0.0	1334.0	1267.0	0	0	0	0
MA1635.1_shift3 (BHLHE22(var.2)) 
; positions_8nt_m19 versus MA1635.1 (BHLHE22(var.2)); m=8/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.483323; ---csCAGCTGsg----
; cor=; Ncor=
a	0	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0	0	0	0
c	0	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0	0	0	0
g	0	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0	0	0	0
t	0	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0	0	0	0
MA0816.1_shift3 (Ascl2) 
; positions_8nt_m19 versus MA0816.1 (Ascl2); m=9/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.456256; ---arCAGCTGyy----
; cor=; Ncor=
a	0	0	0	237.0	128.0	3.0	300.0	7.0	3.0	4.0	0.0	6.0	34.0	0	0	0	0
c	0	0	0	36.0	41.0	300.0	0.0	23.0	300.0	0.0	1.0	206.0	101.0	0	0	0	0
g	0	0	0	63.0	172.0	0.0	0.0	300.0	2.0	0.0	300.0	15.0	28.0	0	0	0	0
t	0	0	0	16.0	1.0	1.0	15.0	18.0	1.0	300.0	2.0	94.0	199.0	0	0	0	0
MA1472.1_shift3 (BHLHA15(var.2)) 
; positions_8nt_m19 versus MA1472.1 (BHLHA15(var.2)); m=10/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.455958; ---avCAGCTGyy----
; cor=; Ncor=
a	0	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0	0	0	0	0
c	0	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0	0	0	0	0
g	0	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0	0	0	0	0
t	0	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0	0	0	0	0
MA1467.1_shift3 (ATOH1(var.2)) 
; positions_8nt_m19 versus MA1467.1 (ATOH1(var.2)); m=11/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.443839; ---AACAGCTGTY----
; cor=; Ncor=
a	0	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0	0	0	0
c	0	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0	0	0	0
g	0	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0	0	0	0
t	0	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0	0	0	0
MA0048.2_shift3 (NHLH1) 
; positions_8nt_m19 versus MA0048.2 (NHLH1); m=12/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.426888; ---cGCAGCTGCk----
; cor=; Ncor=
a	0	0	0	788.0	461.0	3.0	2166.0	0.0	96.0	0.0	2.0	296.0	308.0	0	0	0	0
c	0	0	0	2166.0	179.0	2166.0	3.0	301.0	2166.0	4.0	4.0	2166.0	736.0	0	0	0	0
g	0	0	0	181.0	2166.0	0.0	1.0	2166.0	124.0	4.0	2166.0	102.0	2166.0	0	0	0	0
t	0	0	0	111.0	142.0	0.0	0.0	114.0	0.0	2166.0	1.0	350.0	1489.0	0	0	0	0
MA0671.1_shift0 (NFIX) 
; positions_8nt_m19 versus MA0671.1 (NFIX); m=13/13; ncol2=9; w=9; offset=0; strand=D; shift=0; score=0.406092; sgtGCCArv--------
; cor=; Ncor=
a	7951.0	7832.0	11279.0	132.0	3.0	0.0	32864.0	32864.0	8251.0	0	0	0	0	0	0	0	0
c	8810.0	6134.0	9695.0	186.0	32864.0	32864.0	2230.0	1356.0	9039.0	0	0	0	0	0	0	0	0
g	8725.0	10855.0	5911.0	32864.0	3257.0	0.0	180.0	12688.0	9135.0	0	0	0	0	0	0	0	0
t	7378.0	8043.0	32864.0	2539.0	29.0	0.0	110.0	2399.0	6439.0	0	0	0	0	0	0	0	0