One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m2/peak-motifs_positions_8nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m2/peak-motifs_positions_8nt_m2_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m2_shift0 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m2_shift0 (positions_8nt_m2positions_8nt_m2)
; positions_8nt_m2 (positions_8nt_m2positions_8nt_m2); m=0 (reference); ncol1=17; shift=0; ncol=17; sstGCCAGCTGCTGcys ; Alignment reference a 438 390 276 81 180 14 1894 16 11 85 6 14 75 28 173 380 403 c 557 676 308 171 1533 1952 45 78 1929 12 24 1902 33 102 1297 680 522 g 615 540 387 1577 194 14 25 1872 32 12 1953 31 18 1804 262 417 624 t 383 387 1022 164 86 13 29 27 21 1884 10 46 1867 59 261 516 444

MA1485.1_rc_shift1 (FERD3L_rc)
; positions_8nt_m2 versus MA1485.1_rc (FERD3L_rc); m=1/15; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.590726; -GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_shift2 (MYOG)
; positions_8nt_m2 versus MA0500.2 (MYOG); m=2/15; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.56479; --sarCAGCTGyts--- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; positions_8nt_m2 versus MA0521.1_rc (Tcf12_rc); m=3/15; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.519501; --cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; positions_8nt_m2 versus MA1619.1 (Ptf1a(var.2)); m=4/15; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.505286; --rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_shift2 (MYF5)
; positions_8nt_m2 versus MA1641.1 (MYF5); m=5/15; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.502149; --gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; positions_8nt_m2 versus MA0816.1_rc (Ascl2_rc); m=6/15; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.492098; ---rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; positions_8nt_m2 versus MA1100.2_rc (ASCL1_rc); m=7/15; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.487736; ---rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; positions_8nt_m2 versus MA1635.1 (BHLHE22(var.2)); m=8/15; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.48754; ---csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; positions_8nt_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=9/15; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.478735; ---rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; positions_8nt_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=10/15; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.465127; ---RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; positions_8nt_m2 versus MA1648.1 (TCF12(var.2)); m=11/15; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.460491; ---ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0048.2_shift3 (NHLH1)
; positions_8nt_m2 versus MA0048.2 (NHLH1); m=12/15; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.455907; ---cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1628.1_rc_shift5 (Zic1::Zic2_rc)
; positions_8nt_m2 versus MA1628.1_rc (Zic1::Zic2_rc); m=13/15; ncol2=11; w=11; offset=5; strand=R; shift=5; score=0.454564; -----ysCCTGCTGbg- ; cor=; Ncor= a 0 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 c 0 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 g 0 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 t 0 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0

MA0691.1_rc_shift3 (TFAP4_rc)
; positions_8nt_m2 versus MA0691.1_rc (TFAP4_rc); m=14/15; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.438023; ---AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0665.1_shift3 (MSC)
; positions_8nt_m2 versus MA0665.1 (MSC); m=15/15; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.430382; ---AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_8nt_m2_shift0 (positions_8nt_m2positions_8nt_m2)				; positions_8nt_m2 (positions_8nt_m2positions_8nt_m2); m=0 (reference); ncol1=17; shift=0; ncol=17; sstGCCAGCTGCTGcys ; Alignment reference a 438 390 276 81 180 14 1894 16 11 85 6 14 75 28 173 380 403 c 557 676 308 171 1533 1952 45 78 1929 12 24 1902 33 102 1297 680 522 g 615 540 387 1577 194 14 25 1872 32 12 1953 31 18 1804 262 417 624 t 383 387 1022 164 86 13 29 27 21 1884 10 46 1867 59 261 516 444
MA1485.1_rc_shift1 (FERD3L_rc)				; positions_8nt_m2 versus MA1485.1_rc (FERD3L_rc); m=1/15; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.590726; -GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0
MA0500.2_shift2 (MYOG)				; positions_8nt_m2 versus MA0500.2 (MYOG); m=2/15; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.56479; --sarCAGCTGyts--- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0
MA0521.1_rc_shift2 (Tcf12_rc)				; positions_8nt_m2 versus MA0521.1_rc (Tcf12_rc); m=3/15; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.519501; --cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0
MA1619.1_shift2 (Ptf1a(var.2))				; positions_8nt_m2 versus MA1619.1 (Ptf1a(var.2)); m=4/15; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.505286; --rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0
MA1641.1_shift2 (MYF5)				; positions_8nt_m2 versus MA1641.1 (MYF5); m=5/15; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.502149; --gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0
MA0816.1_rc_shift3 (Ascl2_rc)				; positions_8nt_m2 versus MA0816.1_rc (Ascl2_rc); m=6/15; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.492098; ---rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; positions_8nt_m2 versus MA1100.2_rc (ASCL1_rc); m=7/15; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.487736; ---rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0
MA1635.1_shift3 (BHLHE22(var.2))				; positions_8nt_m2 versus MA1635.1 (BHLHE22(var.2)); m=8/15; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.48754; ---csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; positions_8nt_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=9/15; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.478735; ---rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; positions_8nt_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=10/15; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.465127; ---RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0
MA1648.1_shift3 (TCF12(var.2))				; positions_8nt_m2 versus MA1648.1 (TCF12(var.2)); m=11/15; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.460491; ---ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0
MA0048.2_shift3 (NHLH1)				; positions_8nt_m2 versus MA0048.2 (NHLH1); m=12/15; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.455907; ---cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0
MA1628.1_rc_shift5 (Zic1::Zic2_rc)				; positions_8nt_m2 versus MA1628.1_rc (Zic1::Zic2_rc); m=13/15; ncol2=11; w=11; offset=5; strand=R; shift=5; score=0.454564; -----ysCCTGCTGbg- ; cor=; Ncor= a 0 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 c 0 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 g 0 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 t 0 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0
MA0691.1_rc_shift3 (TFAP4_rc)				; positions_8nt_m2 versus MA0691.1_rc (TFAP4_rc); m=14/15; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.438023; ---AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0
MA0665.1_shift3 (MSC)				; positions_8nt_m2 versus MA0665.1 (MSC); m=15/15; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.430382; ---AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0