Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20.tf
		file1	1	14	3001
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_8nt_m20 MA0499.2 positions_8nt_m20positions_8nt_m20 MYOD1 0.940 0.873 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_8nt_m20 MA0745.2 positions_8nt_m20positions_8nt_m20 SNAI2 0.903 0.838 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_8nt_m20 MA1621.1 positions_8nt_m20positions_8nt_m20 Rbpjl 0.788 0.788 14 14 14 14 1.0000 1.0000 1.0000 D 0
positions_8nt_m20 MA0830.2 positions_8nt_m20positions_8nt_m20 TCF4 0.819 0.760 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_8nt_m20 MA1631.1 positions_8nt_m20positions_8nt_m20 ASCL1(var.2) 0.795 0.738 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_8nt_m20 MA1620.1 positions_8nt_m20positions_8nt_m20 Ptf1a(var.3) 0.776 0.665 14 12 12 14 0.8571 0.8571 1.0000 D 1
positions_8nt_m20 MA0521.1 positions_8nt_m20positions_8nt_m20 Tcf12 0.837 0.658 14 11 11 14 0.7857 0.7857 1.0000 R 1
positions_8nt_m20 MA1559.1 positions_8nt_m20positions_8nt_m20 SNAI3 0.891 0.636 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m20 MA0500.2 positions_8nt_m20positions_8nt_m20 MYOG 0.733 0.628 14 12 12 14 0.8571 0.8571 1.0000 D 1
positions_8nt_m20 MA1619.1 positions_8nt_m20positions_8nt_m20 Ptf1a(var.2) 0.716 0.614 14 12 12 14 0.8571 0.8571 1.0000 D 1
positions_8nt_m20 MA1641.1 positions_8nt_m20positions_8nt_m20 MYF5 0.712 0.610 14 12 12 14 0.8571 0.8571 1.0000 R 1
positions_8nt_m20 MA0103.3 positions_8nt_m20positions_8nt_m20 ZEB1 0.753 0.591 14 11 11 14 0.7857 0.7857 1.0000 D 2
positions_8nt_m20 MA1558.1 positions_8nt_m20positions_8nt_m20 SNAI1 0.815 0.582 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m20 MA1100.2 positions_8nt_m20positions_8nt_m20 ASCL1 0.779 0.556 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m20 MA0820.1 positions_8nt_m20positions_8nt_m20 FIGLA 0.759 0.542 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m20 MA1635.1 positions_8nt_m20positions_8nt_m20 BHLHE22(var.2) 0.726 0.518 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m20 MA1472.1 positions_8nt_m20positions_8nt_m20 BHLHA15(var.2) 0.716 0.512 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m20 MA1467.1 positions_8nt_m20positions_8nt_m20 ATOH1(var.2) 0.705 0.504 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m20 MA0816.1 positions_8nt_m20positions_8nt_m20 Ascl2 0.702 0.502 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m20 MA0774.1 positions_8nt_m20positions_8nt_m20 MEIS2 0.872 0.498 14 8 8 14 0.5714 0.5714 1.0000 R 6
positions_8nt_m20 MA0775.1 positions_8nt_m20positions_8nt_m20 MEIS3 0.853 0.488 14 8 8 14 0.5714 0.5714 1.0000 R 6
positions_8nt_m20 MA0498.2 positions_8nt_m20positions_8nt_m20 MEIS1 0.839 0.420 14 7 7 14 0.5000 0.5000 1.0000 R 7
positions_8nt_m20 MA0622.1 positions_8nt_m20positions_8nt_m20 Mlxip 0.716 0.409 14 8 8 14 0.5714 0.5714 1.0000 D 3 
 Host name	pedagogix
 Job started	2020-04-14.170430
 Job done	2020-04-14.170458
 Seconds	4.43
	user	4.43
	system	0.45
	cuser	21.18
;	csystem	1.3