One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m20/peak-motifs_positions_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m20_shift0 ; 24 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_8nt_m20_shift0 (positions_8nt_m20positions_8nt_m20)     
; positions_8nt_m20 (positions_8nt_m20positions_8nt_m20); m=0 (reference); ncol1=14; shift=0; ncol=14; ycTGCAsCTGTChy
; Alignment reference
a	471	453	169	55	11	2864	29	38	8	0	35	16	892	399
c	935	1314	69	132	2978	41	1982	2924	7	42	166	2518	1030	1107
g	749	747	200	2778	8	17	840	17	6	2947	106	250	320	699
t	846	487	2563	36	4	79	150	22	2980	12	2694	217	759	796
MA0499.2_shift1 (MYOD1) 
; positions_8nt_m20 versus MA0499.2 (MYOD1); m=1/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.872769; -cwgCACCTGTymy
; cor=; Ncor=
a	0	7175.0	9462.0	4549.0	349.0	32281.0	463.0	534.0	241.0	208.0	402.0	1808.0	9462.0	5687.0
c	0	11279.0	7103.0	5622.0	33328.0	583.0	25275.0	32504.0	563.0	386.0	2555.0	19052.0	10485.0	11760.0
g	0	8118.0	8444.0	21884.0	354.0	849.0	7336.0	932.0	366.0	33468.0	1699.0	4440.0	6202.0	7495.0
t	0	7728.0	9291.0	2245.0	269.0	587.0	1226.0	330.0	33130.0	238.0	29644.0	9000.0	8151.0	9358.0
MA0745.2_shift1 (SNAI2) 
; positions_8nt_m20 versus MA0745.2 (SNAI2); m=2/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.838211; -aygCACCTGTmry
; cor=; Ncor=
a	0	14658.0	7668.0	10322.0	408.0	44963.0	112.0	246.0	78.0	179.0	814.0	12017.0	13586.0	6215.0
c	0	10031.0	12314.0	6393.0	44463.0	202.0	45144.0	44739.0	313.0	254.0	6467.0	18771.0	11016.0	13476.0
g	0	11169.0	9490.0	26742.0	323.0	424.0	326.0	487.0	196.0	45257.0	1263.0	6281.0	12297.0	8219.0
t	0	9958.0	16344.0	2359.0	622.0	227.0	234.0	344.0	45229.0	126.0	37272.0	8747.0	8917.0	17906.0
MA1621.1_shift0 (Rbpjl) 
; positions_8nt_m20 versus MA1621.1 (Rbpjl); m=3/23; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.78822; svmaCACCTGtsyc
; cor=; Ncor=
a	2006.0	2466.0	3369.0	6005.0	139.0	9386.0	84.0	234.0	63.0	102.0	569.0	1539.0	2273.0	2082.0
c	2881.0	2427.0	3117.0	1373.0	9273.0	70.0	8533.0	9005.0	144.0	131.0	1718.0	3247.0	2884.0	3003.0
g	2476.0	2549.0	1802.0	1492.0	103.0	110.0	672.0	317.0	132.0	9295.0	1581.0	2687.0	1958.0	2281.0
t	2289.0	2210.0	1364.0	782.0	137.0	86.0	363.0	96.0	9313.0	124.0	5784.0	2179.0	2537.0	2286.0
MA0830.2_shift1 (TCF4) 
; positions_8nt_m20 versus MA0830.2 (TCF4); m=4/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.760255; -cggCACCTGccss
; cor=; Ncor=
a	0	6048.0	7034.0	4168.0	243.0	27023.0	216.0	356.0	372.0	251.0	1694.0	5534.0	6413.0	5133.0
c	0	10052.0	6754.0	5062.0	28686.0	635.0	26765.0	27724.0	1016.0	540.0	18935.0	12872.0	8658.0	9843.0
g	0	7140.0	8618.0	18498.0	321.0	1295.0	1733.0	1197.0	679.0	28432.0	5281.0	4933.0	7964.0	7662.0
t	0	6225.0	7059.0	1737.0	215.0	512.0	751.0	188.0	27398.0	242.0	3555.0	6126.0	6430.0	6827.0
MA1631.1_shift1 (ASCL1(var.2)) 
; positions_8nt_m20 versus MA1631.1 (ASCL1(var.2)); m=5/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.737907; -cdgCACCTGCysc
; cor=; Ncor=
a	0	6833.0	8952.0	5836.0	184.0	32315.0	163.0	196.0	368.0	251.0	399.0	4490.0	7083.0	5972.0
c	0	11805.0	7998.0	6654.0	33562.0	563.0	30169.0	33402.0	740.0	445.0	28844.0	17883.0	10555.0	11996.0
g	0	8371.0	8601.0	18576.0	321.0	860.0	3209.0	607.0	492.0	33411.0	2719.0	2966.0	8939.0	8356.0
t	0	7347.0	8805.0	3290.0	289.0	618.0	815.0	151.0	32756.0	249.0	2394.0	9017.0	7779.0	8032.0
MA1620.1_shift1 (Ptf1a(var.3)) 
; positions_8nt_m20 versus MA1620.1 (Ptf1a(var.3)); m=6/23; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.66548; -rmaCACCTGtky-
; cor=; Ncor=
a	0	2834.0	2613.0	6867.0	184.0	10033.0	116.0	256.0	85.0	68.0	527.0	1678.0	2293.0	0
c	0	2469.0	3700.0	1188.0	9887.0	60.0	8567.0	9612.0	94.0	109.0	1615.0	2527.0	3004.0	0
g	0	2664.0	2379.0	1410.0	113.0	84.0	1182.0	294.0	98.0	9972.0	1516.0	3341.0	2183.0	0
t	0	2324.0	1599.0	826.0	107.0	114.0	426.0	129.0	10014.0	142.0	6633.0	2745.0	2811.0	0
MA0521.1_rc_shift1 (Tcf12_rc) 
; positions_8nt_m20 versus MA0521.1_rc (Tcf12_rc); m=7/23; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.65757; -cwsCAGCTGYy--
; cor=; Ncor=
a	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0
c	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0
g	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0
t	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0
MA1559.1_rc_shift2 (SNAI3_rc) 
; positions_8nt_m20 versus MA1559.1_rc (SNAI3_rc); m=8/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.636214; --trCACCTGyt--
; cor=; Ncor=
a	0	0	553.0	3161.0	30.0	6248.0	0.0	43.0	3.0	35.0	183.0	1110.0	0	0
c	0	0	1569.0	1701.0	6248.0	28.0	6248.0	6248.0	34.0	0.0	2331.0	1525.0	0	0
g	0	0	688.0	6248.0	0.0	12.0	18.0	29.0	0.0	6248.0	0.0	661.0	0	0
t	0	0	4680.0	432.0	94.0	0.0	0.0	118.0	6248.0	23.0	3917.0	2952.0	0	0
MA0500.2_shift1 (MYOG) 
; positions_8nt_m20 versus MA0500.2 (MYOG); m=9/23; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.628354; -sarCAGCTGyts-
; cor=; Ncor=
a	0	5310.0	8428.0	7159.0	86.0	21782.0	95.0	167.0	163.0	182.0	1667.0	4667.0	5018.0	0
c	0	6381.0	3754.0	2730.0	21988.0	176.0	130.0	21964.0	238.0	102.0	10792.0	5497.0	5660.0	0
g	0	5596.0	5483.0	10790.0	101.0	236.0	21963.0	131.0	179.0	21985.0	2706.0	3718.0	6369.0	0
t	0	5070.0	4692.0	1678.0	182.0	163.0	169.0	95.0	21777.0	88.0	7192.0	8475.0	5310.0	0
MA1619.1_shift1 (Ptf1a(var.2)) 
; positions_8nt_m20 versus MA1619.1 (Ptf1a(var.2)); m=10/23; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.613672; -rmaCAGCTGtky-
; cor=; Ncor=
a	0	1869.0	1978.0	4346.0	49.0	7119.0	34.0	224.0	26.0	27.0	535.0	1221.0	1602.0	0
c	0	1803.0	2430.0	1070.0	7149.0	41.0	307.0	6697.0	66.0	27.0	1312.0	1632.0	1977.0	0
g	0	1974.0	1629.0	1308.0	28.0	65.0	6689.0	299.0	40.0	7150.0	1065.0	2426.0	1803.0	0
t	0	1607.0	1216.0	529.0	27.0	28.0	223.0	33.0	7121.0	49.0	4341.0	1974.0	1871.0	0
MA1641.1_rc_shift1 (MYF5_rc) 
; positions_8nt_m20 versus MA1641.1_rc (MYF5_rc); m=11/23; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.610228; -gvaCAGCTGtbc-
; cor=; Ncor=
a	0	2697.0	3507.0	7489.0	95.0	10966.0	100.0	222.0	129.0	43.0	578.0	1572.0	2554.0	0
c	0	2701.0	2985.0	1368.0	10912.0	47.0	230.0	10658.0	69.0	161.0	1774.0	3145.0	3258.0	0
g	0	3258.0	3146.0	1775.0	161.0	68.0	10657.0	230.0	47.0	10911.0	1368.0	2986.0	2700.0	0
t	0	2554.0	1572.0	578.0	42.0	129.0	223.0	100.0	10965.0	95.0	7490.0	3507.0	2698.0	0
MA0103.3_shift2 (ZEB1) 
; positions_8nt_m20 versus MA0103.3 (ZEB1); m=12/23; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.591496; --ssCACCTGsss-
; cor=; Ncor=
a	0	0	3211.0	4685.0	114.0	19905.0	32.0	193.0	4.0	441.0	1982.0	4258.0	3490.0	0
c	0	0	7998.0	5550.0	19195.0	0.0	19878.0	19257.0	501.0	178.0	9561.0	6117.0	6955.0	0
g	0	0	5228.0	5179.0	158.0	223.0	97.0	649.0	355.0	19381.0	5178.0	6601.0	5828.0	0
t	0	0	3692.0	4715.0	662.0	1.0	122.0	30.0	19269.0	129.0	3408.0	3153.0	3856.0	0
MA1558.1_rc_shift2 (SNAI1_rc) 
; positions_8nt_m20 versus MA1558.1_rc (SNAI1_rc); m=13/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.581883; --yrCACCTGyh--
; cor=; Ncor=
a	0	0	6356.0	9044.0	311.0	19982.0	28.0	306.0	568.0	340.0	3518.0	5112.0	0	0
c	0	0	9894.0	5306.0	19982.0	42.0	19982.0	19982.0	91.0	275.0	12989.0	6410.0	0	0
g	0	0	4592.0	10938.0	0.0	0.0	5.0	517.0	297.0	19982.0	501.0	3187.0	0	0
t	0	0	10088.0	1639.0	706.0	38.0	72.0	1766.0	19982.0	446.0	6993.0	5274.0	0	0
MA1100.2_rc_shift2 (ASCL1_rc) 
; positions_8nt_m20 versus MA1100.2_rc (ASCL1_rc); m=14/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.556331; --rgCAGCTGyy--
; cor=; Ncor=
a	0	0	1194.0	1349.0	29.0	4413.0	20.0	625.0	218.0	14.0	354.0	726.0	0	0
c	0	0	889.0	814.0	4413.0	121.0	1320.0	4413.0	60.0	0.0	3079.0	1495.0	0	0
g	0	0	1487.0	3065.0	0.0	24.0	4413.0	1288.0	157.0	4413.0	521.0	926.0	0	0
t	0	0	843.0	177.0	52.0	118.0	729.0	107.0	4413.0	0.0	1334.0	1267.0	0	0
MA0820.1_shift2 (FIGLA) 
; positions_8nt_m20 versus MA0820.1 (FIGLA); m=15/23; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.541912; --wmCACCTGkw--
; cor=; Ncor=
a	0	0	886.0	690.0	0.0	1780.0	0.0	9.0	56.0	36.0	154.0	455.0	0	0
c	0	0	270.0	693.0	1780.0	46.0	1780.0	1780.0	0.0	33.0	225.0	283.0	0	0
g	0	0	175.0	160.0	0.0	0.0	527.0	311.0	17.0	1780.0	569.0	289.0	0	0
t	0	0	449.0	237.0	29.0	14.0	0.0	0.0	1780.0	65.0	832.0	753.0	0	0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc) 
; positions_8nt_m20 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=16/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.518475; --csCAGCTGsg--
; cor=; Ncor=
a	0	0	3886.0	4449.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4402.0	0	0
c	0	0	5625.0	5112.0	18327.0	37.0	53.0	18288.0	52.0	11.0	7267.0	4447.0	0	0
g	0	0	4447.0	7269.0	15.0	52.0	18288.0	53.0	37.0	18331.0	5110.0	5621.0	0	0
t	0	0	4398.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4453.0	3886.0	0	0
MA1472.1_shift2 (BHLHA15(var.2)) 
; positions_8nt_m20 versus MA1472.1 (BHLHA15(var.2)); m=17/23; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.511678; --avCAGCTGyy--
; cor=; Ncor=
a	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0	0	0
c	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0	0	0
g	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0	0	0
t	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0	0	0
MA1467.1_shift2 (ATOH1(var.2)) 
; positions_8nt_m20 versus MA1467.1 (ATOH1(var.2)); m=18/23; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.503672; --AACAGCTGTY--
; cor=; Ncor=
a	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0	0
c	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0	0
g	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0	0
t	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0	0
MA0816.1_rc_shift2 (Ascl2_rc) 
; positions_8nt_m20 versus MA0816.1_rc (Ascl2_rc); m=19/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.501698; --rrCAGCTGyt--
; cor=; Ncor=
a	0	0	199.0	94.0	2.0	300.0	1.0	18.0	15.0	1.0	1.0	16.0	0	0
c	0	0	28.0	15.0	300.0	0.0	2.0	300.0	0.0	0.0	172.0	63.0	0	0
g	0	0	101.0	206.0	1.0	0.0	300.0	23.0	0.0	300.0	41.0	36.0	0	0
t	0	0	34.0	6.0	0.0	4.0	3.0	7.0	300.0	3.0	128.0	237.0	0	0
MA0774.1_rc_shift6 (MEIS2_rc) 
; positions_8nt_m20 versus MA0774.1_rc (MEIS2_rc); m=20/23; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.498094; ------sCTGTCAa
; cor=; Ncor=
a	0	0	0	0	0	0	88.0	67.0	0.0	5.0	62.0	0.0	1351.0	1351.0
c	0	0	0	0	0	0	650.0	1351.0	4.0	0.0	25.0	1351.0	40.0	314.0
g	0	0	0	0	0	0	701.0	98.0	7.0	1351.0	3.0	0.0	3.0	264.0
t	0	0	0	0	0	0	157.0	83.0	1351.0	9.0	1351.0	0.0	31.0	408.0
MA0775.1_rc_shift6 (MEIS3_rc) 
; positions_8nt_m20 versus MA0775.1_rc (MEIS3_rc); m=21/23; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.487623; ------scTGTCAw
; cor=; Ncor=
a	0	0	0	0	0	0	975.0	2094.0	145.0	160.0	53.0	0.0	7165.0	3451.0
c	0	0	0	0	0	0	2888.0	7165.0	468.0	8.0	455.0	7165.0	260.0	1788.0
g	0	0	0	0	0	0	2342.0	1889.0	8.0	7165.0	20.0	6.0	383.0	60.0
t	0	0	0	0	0	0	960.0	1690.0	7165.0	53.0	7165.0	0.0	465.0	1866.0
MA0498.2_rc_shift7 (MEIS1_rc) 
; positions_8nt_m20 versus MA0498.2_rc (MEIS1_rc); m=22/23; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.419642; -------cTGTCAw
; cor=; Ncor=
a	0	0	0	0	0	0	0	15106.0	3861.0	1155.0	0.0	0.0	77159.0	24921.0
c	0	0	0	0	0	0	0	29965.0	9263.0	0.0	672.0	77159.0	3174.0	9714.0
g	0	0	0	0	0	0	0	14864.0	0.0	77159.0	2903.0	1249.0	5575.0	18797.0
t	0	0	0	0	0	0	0	17224.0	77159.0	0.0	77159.0	0.0	8690.0	23727.0
MA0622.1_shift3 (Mlxip) 
; positions_8nt_m20 versus MA0622.1 (Mlxip); m=23/23; ncol2=8; w=8; offset=3; strand=D; shift=3; score=0.409365; ---bCACGTGk---
; cor=; Ncor=
a	0	0	0	53.0	0.0	999.0	0.0	0.0	0.0	0.0	188.0	0	0	0
c	0	0	0	263.0	999.0	0.0	999.0	0.0	0.0	0.0	63.0	0	0	0
g	0	0	0	421.0	0.0	0.0	0.0	999.0	0.0	999.0	250.0	0	0	0
t	0	0	0	263.0	0.0	0.0	0.0	0.0	999.0	0.0	499.0	0	0	0