One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m23/peak-motifs_positions_8nt_m23.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m23/peak-motifs_positions_8nt_m23_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m23_shift0 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m23_shift0 (positions_8nt_m23positions_8nt_m23)
; positions_8nt_m23 (positions_8nt_m23positions_8nt_m23); m=0 (reference); ncol1=16; shift=0; ncol=16; svgGGACAGCTGGasv ; Alignment reference a 547 670 626 151 121 2338 22 2489 27 82 27 8 88 1224 571 639 c 787 647 258 79 73 72 2469 21 20 2321 86 10 333 452 641 695 g 673 835 1237 2167 2326 106 30 22 2483 114 47 2517 2021 563 932 685 t 536 391 422 146 23 27 22 11 13 26 2383 8 101 304 399 524

MA0499.2_rc_shift2 (MYOD1_rc)
; positions_8nt_m23 versus MA0499.2_rc (MYOD1_rc); m=1/19; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.646217; --rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA1109.1_shift3 (NEUROD1)
; positions_8nt_m23 versus MA1109.1 (NEUROD1); m=2/19; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.625224; ---graCAGATGGyrs ; cor=; Ncor= a 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0

MA0521.1_shift4 (Tcf12)
; positions_8nt_m23 versus MA0521.1 (Tcf12); m=3/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.622787; ----rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1641.1_shift3 (MYF5)
; positions_8nt_m23 versus MA1641.1 (MYF5); m=4/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.611529; ---gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; positions_8nt_m23 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.608075; ---rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0

MA1123.2_rc_shift3 (TWIST1_rc)
; positions_8nt_m23 versus MA1123.2_rc (TWIST1_rc); m=6/19; ncol2=13; w=13; offset=3; strand=R; shift=3; score=0.599735; ---avaCATCTGGwwt ; cor=; Ncor= a 0 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0

MA1642.1_shift2 (NEUROG2(var.2))
; positions_8nt_m23 versus MA1642.1 (NEUROG2(var.2)); m=7/19; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.592265; --rrraCAGATGGyv- ; cor=; Ncor= a 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 0 c 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 0 g 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 0 t 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_8nt_m23 versus MA0500.2_rc (MYOG_rc); m=8/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.583631; ---sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0745.2_rc_shift2 (SNAI2_rc)
; positions_8nt_m23 versus MA0745.2_rc (SNAI2_rc); m=9/19; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.572562; --rykACAGGTGcrt- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; positions_8nt_m23 versus MA1467.1_rc (ATOH1(var.2)_rc); m=10/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.52535; ----RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_8nt_m23 versus MA1635.1 (BHLHE22(var.2)); m=11/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.522787; ----csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_8nt_m23 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.521866; ----rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA1100.2_shift4 (ASCL1)
; positions_8nt_m23 versus MA1100.2 (ASCL1); m=13/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.49035; ----rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA1628.1_shift4 (Zic1::Zic2)
; positions_8nt_m23 versus MA1628.1 (Zic1::Zic2); m=14/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.489839; ----cvCAGCAGGsr- ; cor=; Ncor= a 0 0 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 c 0 0 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 g 0 0 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 t 0 0 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; positions_8nt_m23 versus MA0816.1_rc (Ascl2_rc); m=15/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.470188; ----rrCAGCTGyt-- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0

MA0691.1_shift4 (TFAP4)
; positions_8nt_m23 versus MA0691.1 (TFAP4); m=16/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.462843; ----AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; positions_8nt_m23 versus MA0820.1_rc (FIGLA_rc); m=17/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.461951; ----wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_8nt_m23 versus MA0665.1_rc (MSC_rc); m=18/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.461423; ----AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; positions_8nt_m23 versus MA0667.1_rc (MYF6_rc); m=19/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.440983; ----RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_8nt_m23_shift0 (positions_8nt_m23positions_8nt_m23)				; positions_8nt_m23 (positions_8nt_m23positions_8nt_m23); m=0 (reference); ncol1=16; shift=0; ncol=16; svgGGACAGCTGGasv ; Alignment reference a 547 670 626 151 121 2338 22 2489 27 82 27 8 88 1224 571 639 c 787 647 258 79 73 72 2469 21 20 2321 86 10 333 452 641 695 g 673 835 1237 2167 2326 106 30 22 2483 114 47 2517 2021 563 932 685 t 536 391 422 146 23 27 22 11 13 26 2383 8 101 304 399 524
MA0499.2_rc_shift2 (MYOD1_rc)				; positions_8nt_m23 versus MA0499.2_rc (MYOD1_rc); m=1/19; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.646217; --rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0
MA1109.1_shift3 (NEUROD1)				; positions_8nt_m23 versus MA1109.1 (NEUROD1); m=2/19; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.625224; ---graCAGATGGyrs ; cor=; Ncor= a 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0
MA0521.1_shift4 (Tcf12)				; positions_8nt_m23 versus MA0521.1 (Tcf12); m=3/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.622787; ----rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA1641.1_shift3 (MYF5)				; positions_8nt_m23 versus MA1641.1 (MYF5); m=4/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.611529; ---gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0
MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)				; positions_8nt_m23 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.608075; ---rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0
MA1123.2_rc_shift3 (TWIST1_rc)				; positions_8nt_m23 versus MA1123.2_rc (TWIST1_rc); m=6/19; ncol2=13; w=13; offset=3; strand=R; shift=3; score=0.599735; ---avaCATCTGGwwt ; cor=; Ncor= a 0 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0
MA1642.1_shift2 (NEUROG2(var.2))				; positions_8nt_m23 versus MA1642.1 (NEUROG2(var.2)); m=7/19; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.592265; --rrraCAGATGGyv- ; cor=; Ncor= a 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 0 c 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 0 g 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 0 t 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0 0
MA0500.2_rc_shift3 (MYOG_rc)				; positions_8nt_m23 versus MA0500.2_rc (MYOG_rc); m=8/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.583631; ---sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA0745.2_rc_shift2 (SNAI2_rc)				; positions_8nt_m23 versus MA0745.2_rc (SNAI2_rc); m=9/19; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.572562; --rykACAGGTGcrt- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0
MA1467.1_rc_shift4 (ATOH1(var.2)_rc)				; positions_8nt_m23 versus MA1467.1_rc (ATOH1(var.2)_rc); m=10/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.52535; ----RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0
MA1635.1_shift4 (BHLHE22(var.2))				; positions_8nt_m23 versus MA1635.1 (BHLHE22(var.2)); m=11/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.522787; ----csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)				; positions_8nt_m23 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.521866; ----rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0
MA1100.2_shift4 (ASCL1)				; positions_8nt_m23 versus MA1100.2 (ASCL1); m=13/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.49035; ----rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0
MA1628.1_shift4 (Zic1::Zic2)				; positions_8nt_m23 versus MA1628.1 (Zic1::Zic2); m=14/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.489839; ----cvCAGCAGGsr- ; cor=; Ncor= a 0 0 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 c 0 0 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 g 0 0 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 t 0 0 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0
MA0816.1_rc_shift4 (Ascl2_rc)				; positions_8nt_m23 versus MA0816.1_rc (Ascl2_rc); m=15/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.470188; ----rrCAGCTGyt-- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0
MA0691.1_shift4 (TFAP4)				; positions_8nt_m23 versus MA0691.1 (TFAP4); m=16/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.462843; ----AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA0820.1_rc_shift4 (FIGLA_rc)				; positions_8nt_m23 versus MA0820.1_rc (FIGLA_rc); m=17/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.461951; ----wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0
MA0665.1_rc_shift4 (MSC_rc)				; positions_8nt_m23 versus MA0665.1_rc (MSC_rc); m=18/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.461423; ----AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0
MA0667.1_rc_shift4 (MYF6_rc)				; positions_8nt_m23 versus MA0667.1_rc (MYF6_rc); m=19/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.440983; ----RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0