Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m24/peak-motifs_positions_8nt_m24_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m24/peak-motifs_positions_8nt_m24.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m24/peak-motifs_positions_8nt_m24_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m24/peak-motifs_positions_8nt_m24.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m24/peak-motifs_positions_8nt_m24_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m24/peak-motifs_positions_8nt_m24_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m24/peak-motifs_positions_8nt_m24_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m24/peak-motifs_positions_8nt_m24_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m24/peak-motifs_positions_8nt_m24_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m24/peak-motifs_positions_8nt_m24_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m24/peak-motifs_positions_8nt_m24.tf
		file1	1	16	1898
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_8nt_m24 MA1109.1 positions_8nt_m24positions_8nt_m24 NEUROD1 0.729 0.592 16 13 13 16 0.8125 0.8125 1.0000 R 1
positions_8nt_m24 MA1631.1 positions_8nt_m24positions_8nt_m24 ASCL1(var.2) 0.725 0.589 16 13 13 16 0.8125 0.8125 1.0000 D 2
positions_8nt_m24 MA0500.2 positions_8nt_m24positions_8nt_m24 MYOG 0.782 0.587 16 12 12 16 0.7500 0.7500 1.0000 D 2
positions_8nt_m24 MA1641.1 positions_8nt_m24positions_8nt_m24 MYF5 0.726 0.545 16 12 12 16 0.7500 0.7500 1.0000 D 2
positions_8nt_m24 MA1619.1 positions_8nt_m24positions_8nt_m24 Ptf1a(var.2) 0.725 0.543 16 12 12 16 0.7500 0.7500 1.0000 D 2
positions_8nt_m24 MA0521.1 positions_8nt_m24positions_8nt_m24 Tcf12 0.777 0.534 16 11 11 16 0.6875 0.6875 1.0000 R 2
positions_8nt_m24 MA1571.1 positions_8nt_m24positions_8nt_m24 TGIF2LX 0.705 0.529 16 12 12 16 0.7500 0.7500 1.0000 R 2
positions_8nt_m24 MA0796.1 positions_8nt_m24positions_8nt_m24 TGIF1 0.703 0.527 16 12 12 16 0.7500 0.7500 1.0000 R 2
positions_8nt_m24 MA1100.2 positions_8nt_m24positions_8nt_m24 ASCL1 0.826 0.517 16 10 10 16 0.6250 0.6250 1.0000 R 3
positions_8nt_m24 MA1635.1 positions_8nt_m24positions_8nt_m24 BHLHE22(var.2) 0.826 0.516 16 10 10 16 0.6250 0.6250 1.0000 D 3
positions_8nt_m24 MA1648.1 positions_8nt_m24positions_8nt_m24 TCF12(var.2) 0.718 0.494 16 11 11 16 0.6875 0.6875 1.0000 D 3
positions_8nt_m24 MA0522.3 positions_8nt_m24positions_8nt_m24 TCF3 0.718 0.493 16 11 11 16 0.6875 0.6875 1.0000 D 3
positions_8nt_m24 MA0816.1 positions_8nt_m24positions_8nt_m24 Ascl2 0.778 0.486 16 10 10 16 0.6250 0.6250 1.0000 D 3
positions_8nt_m24 MA1472.1 positions_8nt_m24positions_8nt_m24 BHLHA15(var.2) 0.778 0.486 16 10 10 16 0.6250 0.6250 1.0000 D 3
positions_8nt_m24 MA1467.1 positions_8nt_m24positions_8nt_m24 ATOH1(var.2) 0.752 0.470 16 10 10 16 0.6250 0.6250 1.0000 D 3
positions_8nt_m24 MA0048.2 positions_8nt_m24positions_8nt_m24 NHLH1 0.731 0.457 16 10 10 16 0.6250 0.6250 1.0000 D 3
positions_8nt_m24 MA0671.1 positions_8nt_m24positions_8nt_m24 NFIX 0.770 0.433 16 9 9 16 0.5625 0.5625 1.0000 D 0
positions_8nt_m24 MA0739.1 positions_8nt_m24positions_8nt_m24 Hic1 0.750 0.422 16 9 9 16 0.5625 0.5625 1.0000 D 1
positions_8nt_m24 MA0597.1 positions_8nt_m24positions_8nt_m24 THAP1 0.866 0.408 16 9 8 17 0.4706 0.5000 0.8889 D 8 
 Host name	pedagogix
 Job started	2020-04-14.170602
 Job done	2020-04-14.170625
 Seconds	3.43
	user	3.43
	system	0.4
	cuser	18.48
;	csystem	1.13