Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m25/peak-motifs_positions_8nt_m25_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m25/peak-motifs_positions_8nt_m25.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m25/peak-motifs_positions_8nt_m25_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m25/peak-motifs_positions_8nt_m25.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m25/peak-motifs_positions_8nt_m25_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m25/peak-motifs_positions_8nt_m25_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m25/peak-motifs_positions_8nt_m25_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m25/peak-motifs_positions_8nt_m25_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m25/peak-motifs_positions_8nt_m25_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m25/peak-motifs_positions_8nt_m25_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m25/peak-motifs_positions_8nt_m25.tf
		file1	1	14	2568
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_8nt_m25 MA1621.1 positions_8nt_m25positions_8nt_m25 Rbpjl 0.836 0.836 14 14 14 14 1.0000 1.0000 1.0000 R 0
positions_8nt_m25 MA0499.2 positions_8nt_m25positions_8nt_m25 MYOD1 0.848 0.788 14 13 13 14 0.9286 0.9286 1.0000 R 0
positions_8nt_m25 MA0745.2 positions_8nt_m25positions_8nt_m25 SNAI2 0.840 0.780 14 13 13 14 0.9286 0.9286 1.0000 R 0
positions_8nt_m25 MA1109.1 positions_8nt_m25positions_8nt_m25 NEUROD1 0.806 0.748 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_8nt_m25 MA1620.1 positions_8nt_m25positions_8nt_m25 Ptf1a(var.3) 0.844 0.723 14 12 12 14 0.8571 0.8571 1.0000 R 1
positions_8nt_m25 MA1642.1 positions_8nt_m25positions_8nt_m25 NEUROG2(var.2) 0.775 0.720 14 13 13 14 0.9286 0.9286 1.0000 D 0
positions_8nt_m25 MA0830.2 positions_8nt_m25positions_8nt_m25 TCF4 0.768 0.713 14 13 13 14 0.9286 0.9286 1.0000 R 0
positions_8nt_m25 MA0832.1 positions_8nt_m25positions_8nt_m25 Tcf21 0.705 0.705 14 14 14 14 1.0000 1.0000 1.0000 D 0
positions_8nt_m25 MA1631.1 positions_8nt_m25positions_8nt_m25 ASCL1(var.2) 0.753 0.699 14 13 13 14 0.9286 0.9286 1.0000 R 0
positions_8nt_m25 MA0743.2 positions_8nt_m25positions_8nt_m25 SCRT1 0.873 0.668 14 16 13 17 0.7647 0.9286 0.8125 D -3
positions_8nt_m25 MA0744.2 positions_8nt_m25positions_8nt_m25 SCRT2 0.871 0.666 14 16 13 17 0.7647 0.9286 0.8125 D -3
positions_8nt_m25 MA1618.1 positions_8nt_m25positions_8nt_m25 Ptf1a 0.713 0.662 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_8nt_m25 MA0103.3 positions_8nt_m25positions_8nt_m25 ZEB1 0.807 0.634 14 11 11 14 0.7857 0.7857 1.0000 R 1
positions_8nt_m25 MA1105.2 positions_8nt_m25positions_8nt_m25 GRHL2 0.739 0.633 14 12 12 14 0.8571 0.8571 1.0000 D 0
positions_8nt_m25 MA0521.1 positions_8nt_m25positions_8nt_m25 Tcf12 0.800 0.629 14 11 11 14 0.7857 0.7857 1.0000 D 2
positions_8nt_m25 MA0091.1 positions_8nt_m25positions_8nt_m25 TAL1::TCF3 0.728 0.624 14 12 12 14 0.8571 0.8571 1.0000 R 2
positions_8nt_m25 MA0820.1 positions_8nt_m25positions_8nt_m25 FIGLA 0.873 0.623 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m25 MA1641.1 positions_8nt_m25positions_8nt_m25 MYF5 0.727 0.623 14 12 12 14 0.8571 0.8571 1.0000 D 1
positions_8nt_m25 MA1619.1 positions_8nt_m25positions_8nt_m25 Ptf1a(var.2) 0.723 0.620 14 12 12 14 0.8571 0.8571 1.0000 R 1
positions_8nt_m25 MA1102.2 positions_8nt_m25positions_8nt_m25 CTCFL 0.708 0.607 14 12 12 14 0.8571 0.8571 1.0000 D 2
positions_8nt_m25 MA1559.1 positions_8nt_m25positions_8nt_m25 SNAI3 0.844 0.603 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m25 MA1648.1 positions_8nt_m25positions_8nt_m25 TCF12(var.2) 0.764 0.601 14 11 11 14 0.7857 0.7857 1.0000 R 1
positions_8nt_m25 MA0522.3 positions_8nt_m25positions_8nt_m25 TCF3 0.756 0.594 14 11 11 14 0.7857 0.7857 1.0000 R 1
positions_8nt_m25 MA1558.1 positions_8nt_m25positions_8nt_m25 SNAI1 0.808 0.577 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m25 MA1467.1 positions_8nt_m25positions_8nt_m25 ATOH1(var.2) 0.781 0.558 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m25 MA0665.1 positions_8nt_m25positions_8nt_m25 MSC 0.767 0.548 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m25 MA1472.1 positions_8nt_m25positions_8nt_m25 BHLHA15(var.2) 0.755 0.539 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m25 MA1570.1 positions_8nt_m25positions_8nt_m25 TFAP4(var.2) 0.730 0.522 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m25 MA0667.1 positions_8nt_m25positions_8nt_m25 MYF6 0.724 0.517 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m25 MA1100.2 positions_8nt_m25positions_8nt_m25 ASCL1 0.722 0.516 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m25 MA0819.1 positions_8nt_m25positions_8nt_m25 CLOCK 0.721 0.515 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m25 MA0691.1 positions_8nt_m25positions_8nt_m25 TFAP4 0.717 0.512 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m25 MA1493.1 positions_8nt_m25positions_8nt_m25 HES6 0.714 0.510 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m25 MA1638.1 positions_8nt_m25positions_8nt_m25 HAND2 0.710 0.507 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m25 MA0626.1 positions_8nt_m25positions_8nt_m25 Npas2 0.706 0.504 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m25 MA0608.1 positions_8nt_m25positions_8nt_m25 Creb3l2 0.760 0.489 14 9 9 14 0.6429 0.6429 1.0000 R 3
positions_8nt_m25 MA0807.1 positions_8nt_m25positions_8nt_m25 TBX5 0.751 0.429 14 8 8 14 0.5714 0.5714 1.0000 D 5
positions_8nt_m25 MA0622.1 positions_8nt_m25positions_8nt_m25 Mlxip 0.729 0.416 14 8 8 14 0.5714 0.5714 1.0000 R 3
positions_8nt_m25 MA0806.1 positions_8nt_m25positions_8nt_m25 TBX4 0.727 0.416 14 8 8 14 0.5714 0.5714 1.0000 D 5
positions_8nt_m25 MA0607.1 positions_8nt_m25positions_8nt_m25 Bhlha15 0.708 0.404 14 8 8 14 0.5714 0.5714 1.0000 R 3 
 Host name	pedagogix
 Job started	2020-04-14.170626
 Job done	2020-04-14.170719
 Seconds	8.37
	user	8.37
	system	0.89
	cuser	42.18
;	csystem	2.44