One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m27/peak-motifs_positions_8nt_m27.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m27/peak-motifs_positions_8nt_m27_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m27_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m27_shift0 (positions_8nt_m27positions_8nt_m27)
; positions_8nt_m27 (positions_8nt_m27positions_8nt_m27); m=0 (reference); ncol1=21; shift=0; ncol=21; sstGCCAGCTGCAGCTGrssm ; Alignment reference a 64 32 32 6 27 6 249 6 1 19 5 4 234 5 7 6 4 82 27 39 68 c 68 97 44 8 206 250 4 28 255 4 7 247 4 8 226 4 11 57 75 78 98 g 78 88 45 244 25 3 5 226 6 8 252 10 5 246 28 3 247 77 118 102 60 t 55 48 144 7 7 6 7 5 3 234 1 4 22 6 4 252 3 49 45 46 39

MA0500.2_shift8 (MYOG)
; positions_8nt_m27 versus MA0500.2 (MYOG); m=1/7; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.463603; --------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 c 0 0 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 g 0 0 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 t 0 0 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0

MA1619.1_rc_shift8 (Ptf1a(var.2)_rc)
; positions_8nt_m27 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=2/7; ncol2=12; w=12; offset=8; strand=R; shift=8; score=0.421001; --------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0

MA0521.1_rc_shift8 (Tcf12_rc)
; positions_8nt_m27 versus MA0521.1_rc (Tcf12_rc); m=3/7; ncol2=11; w=11; offset=8; strand=R; shift=8; score=0.42086; --------cwsCAGCTGYy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 c 0 0 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 g 0 0 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 t 0 0 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0

MA1635.1_shift9 (BHLHE22(var.2))
; positions_8nt_m27 versus MA1635.1 (BHLHE22(var.2)); m=4/7; ncol2=10; w=10; offset=9; strand=D; shift=9; score=0.415709; ---------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1641.1_rc_shift8 (MYF5_rc)
; positions_8nt_m27 versus MA1641.1_rc (MYF5_rc); m=5/7; ncol2=12; w=12; offset=8; strand=R; shift=8; score=0.407133; --------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA1100.2_rc_shift9 (ASCL1_rc)
; positions_8nt_m27 versus MA1100.2_rc (ASCL1_rc); m=6/7; ncol2=10; w=10; offset=9; strand=R; shift=9; score=0.404626; ---------rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA0048.2_rc_shift9 (NHLH1_rc)
; positions_8nt_m27 versus MA0048.2_rc (NHLH1_rc); m=7/7; ncol2=10; w=10; offset=9; strand=R; shift=9; score=0.401379; ---------mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_8nt_m27_shift0 (positions_8nt_m27positions_8nt_m27)				; positions_8nt_m27 (positions_8nt_m27positions_8nt_m27); m=0 (reference); ncol1=21; shift=0; ncol=21; sstGCCAGCTGCAGCTGrssm ; Alignment reference a 64 32 32 6 27 6 249 6 1 19 5 4 234 5 7 6 4 82 27 39 68 c 68 97 44 8 206 250 4 28 255 4 7 247 4 8 226 4 11 57 75 78 98 g 78 88 45 244 25 3 5 226 6 8 252 10 5 246 28 3 247 77 118 102 60 t 55 48 144 7 7 6 7 5 3 234 1 4 22 6 4 252 3 49 45 46 39
MA0500.2_shift8 (MYOG)				; positions_8nt_m27 versus MA0500.2 (MYOG); m=1/7; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.463603; --------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 c 0 0 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 g 0 0 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 t 0 0 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0
MA1619.1_rc_shift8 (Ptf1a(var.2)_rc)				; positions_8nt_m27 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=2/7; ncol2=12; w=12; offset=8; strand=R; shift=8; score=0.421001; --------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0
MA0521.1_rc_shift8 (Tcf12_rc)				; positions_8nt_m27 versus MA0521.1_rc (Tcf12_rc); m=3/7; ncol2=11; w=11; offset=8; strand=R; shift=8; score=0.42086; --------cwsCAGCTGYy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 c 0 0 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 g 0 0 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 t 0 0 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0
MA1635.1_shift9 (BHLHE22(var.2))				; positions_8nt_m27 versus MA1635.1 (BHLHE22(var.2)); m=4/7; ncol2=10; w=10; offset=9; strand=D; shift=9; score=0.415709; ---------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA1641.1_rc_shift8 (MYF5_rc)				; positions_8nt_m27 versus MA1641.1_rc (MYF5_rc); m=5/7; ncol2=12; w=12; offset=8; strand=R; shift=8; score=0.407133; --------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0
MA1100.2_rc_shift9 (ASCL1_rc)				; positions_8nt_m27 versus MA1100.2_rc (ASCL1_rc); m=6/7; ncol2=10; w=10; offset=9; strand=R; shift=9; score=0.404626; ---------rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0
MA0048.2_rc_shift9 (NHLH1_rc)				; positions_8nt_m27 versus MA0048.2_rc (NHLH1_rc); m=7/7; ncol2=10; w=10; offset=9; strand=R; shift=9; score=0.401379; ---------mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0