One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m3/peak-motifs_positions_8nt_m3_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m3_shift0 ; 21 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_8nt_m3_shift0 (positions_8nt_m3positions_8nt_m3)     
; positions_8nt_m3 (positions_8nt_m3positions_8nt_m3); m=0 (reference); ncol1=17; shift=0; ncol=17; sstGCCAGCTGCCasss
; Alignment reference
a	338	303	262	43	115	13	1506	17	24	19	9	30	23	1050	220	270	281
c	438	592	202	90	1325	1558	31	63	1526	21	20	1427	1508	187	401	573	477
g	509	414	271	1417	101	9	19	1479	22	18	1543	47	22	136	705	457	438
t	305	281	855	40	49	10	34	31	18	1532	18	86	37	217	264	290	394
MA1109.1_rc_shift1 (NEUROD1_rc) 
; positions_8nt_m3 versus MA1109.1_rc (NEUROD1_rc); m=1/20; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.546091; -syrCCATCTGtyc---
; cor=; Ncor=
a	0	525.0	451.0	580.0	168.0	31.0	2157.0	21.0	90.0	18.0	12.0	47.0	298.0	566.0	0	0	0
c	0	628.0	599.0	418.0	1962.0	2231.0	19.0	77.0	2152.0	16.0	13.0	494.0	906.0	726.0	0	0	0
g	0	591.0	540.0	911.0	93.0	7.0	51.0	150.0	24.0	7.0	2240.0	452.0	323.0	429.0	0	0	0
t	0	538.0	692.0	373.0	59.0	13.0	55.0	2034.0	16.0	2241.0	17.0	1289.0	755.0	561.0	0	0	0
MA0500.2_shift2 (MYOG) 
; positions_8nt_m3 versus MA0500.2 (MYOG); m=2/20; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.545653; --sarCAGCTGyts---
; cor=; Ncor=
a	0	0	5310.0	8428.0	7159.0	86.0	21782.0	95.0	167.0	163.0	182.0	1667.0	4667.0	5018.0	0	0	0
c	0	0	6381.0	3754.0	2730.0	21988.0	176.0	130.0	21964.0	238.0	102.0	10792.0	5497.0	5660.0	0	0	0
g	0	0	5596.0	5483.0	10790.0	101.0	236.0	21963.0	131.0	179.0	21985.0	2706.0	3718.0	6369.0	0	0	0
t	0	0	5070.0	4692.0	1678.0	182.0	163.0	169.0	95.0	21777.0	88.0	7192.0	8475.0	5310.0	0	0	0
MA1631.1_shift2 (ASCL1(var.2)) 
; positions_8nt_m3 versus MA1631.1 (ASCL1(var.2)); m=3/20; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.545057; --cdgCACCTGCysc--
; cor=; Ncor=
a	0	0	6833.0	8952.0	5836.0	184.0	32315.0	163.0	196.0	368.0	251.0	399.0	4490.0	7083.0	5972.0	0	0
c	0	0	11805.0	7998.0	6654.0	33562.0	563.0	30169.0	33402.0	740.0	445.0	28844.0	17883.0	10555.0	11996.0	0	0
g	0	0	8371.0	8601.0	18576.0	321.0	860.0	3209.0	607.0	492.0	33411.0	2719.0	2966.0	8939.0	8356.0	0	0
t	0	0	7347.0	8805.0	3290.0	289.0	618.0	815.0	151.0	32756.0	249.0	2394.0	9017.0	7779.0	8032.0	0	0
MA0796.1_rc_shift2 (TGIF1_rc) 
; positions_8nt_m3 versus MA0796.1_rc (TGIF1_rc); m=4/20; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.533923; --TGACAGCTGTCA---
; cor=; Ncor=
a	0	0	33.0	17.0	12656.0	9.0	12775.0	12.0	963.0	4.0	7.0	0.0	4.0	13221.0	0	0	0
c	0	0	32.0	13.0	3.0	13261.0	8.0	2520.0	12673.0	22.0	5.0	20.0	13499.0	1.0	0	0	0
g	0	0	17.0	13485.0	24.0	13.0	62.0	10562.0	20.0	5.0	13304.0	3.0	8.0	19.0	0	0	0
t	0	0	9034.0	36.0	45.0	11.0	1.0	452.0	14.0	8861.0	1.0	8828.0	9.0	39.0	0	0	0
MA1571.1_rc_shift2 (TGIF2LX_rc) 
; positions_8nt_m3 versus MA1571.1_rc (TGIF2LX_rc); m=5/20; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.533462; --TGACAgcTGTCA---
; cor=; Ncor=
a	0	0	232.0	66.0	2539.0	22.0	2539.0	38.0	362.0	40.0	59.0	428.0	47.0	2539.0	0	0	0
c	0	0	361.0	172.0	72.0	2539.0	23.0	554.0	1566.0	316.0	29.0	132.0	2539.0	145.0	0	0	0
g	0	0	132.0	2539.0	127.0	23.0	318.0	1568.0	575.0	18.0	2539.0	64.0	187.0	355.0	0	0	0
t	0	0	2539.0	45.0	428.0	64.0	37.0	380.0	37.0	2539.0	32.0	2539.0	52.0	237.0	0	0	0
MA1572.1_shift2 (TGIF2LY) 
; positions_8nt_m3 versus MA1572.1 (TGIF2LY); m=6/20; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.528298; --TGACAgcTGTCA---
; cor=; Ncor=
a	0	0	736.0	162.0	5209.0	123.0	5209.0	130.0	1033.0	140.0	175.0	1084.0	135.0	5209.0	0	0	0
c	0	0	836.0	270.0	163.0	5209.0	37.0	1267.0	2850.0	848.0	61.0	371.0	5209.0	362.0	0	0	0
g	0	0	415.0	5209.0	349.0	66.0	833.0	2794.0	1188.0	73.0	5209.0	145.0	259.0	807.0	0	0	0
t	0	0	5209.0	104.0	1197.0	144.0	110.0	1018.0	138.0	5209.0	121.0	5209.0	172.0	679.0	0	0	0
MA0797.1_rc_shift2 (TGIF2_rc) 
; positions_8nt_m3 versus MA0797.1_rc (TGIF2_rc); m=7/20; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.526096; --TGACAsCTGTCA---
; cor=; Ncor=
a	0	0	420.0	113.0	11801.0	83.0	11801.0	91.0	2690.0	41.0	156.0	155.0	52.0	11801.0	0	0	0
c	0	0	395.0	136.0	123.0	11801.0	57.0	4341.0	11801.0	270.0	51.0	396.0	11801.0	153.0	0	0	0
g	0	0	172.0	11801.0	621.0	77.0	410.0	7459.0	262.0	25.0	11801.0	34.0	48.0	421.0	0	0	0
t	0	0	11801.0	70.0	601.0	150.0	71.0	1501.0	324.0	11801.0	127.0	11801.0	97.0	477.0	0	0	0
MA1641.1_shift2 (MYF5) 
; positions_8nt_m3 versus MA1641.1 (MYF5); m=8/20; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.505041; --gvaCAGCTGtbc---
; cor=; Ncor=
a	0	0	2698.0	3507.0	7490.0	95.0	10965.0	100.0	223.0	129.0	42.0	578.0	1572.0	2554.0	0	0	0
c	0	0	2700.0	2986.0	1368.0	10911.0	47.0	230.0	10657.0	68.0	161.0	1775.0	3146.0	3258.0	0	0	0
g	0	0	3258.0	3145.0	1774.0	161.0	69.0	10658.0	230.0	47.0	10912.0	1368.0	2985.0	2701.0	0	0	0
t	0	0	2554.0	1572.0	578.0	43.0	129.0	222.0	100.0	10966.0	95.0	7489.0	3507.0	2697.0	0	0	0
MA1619.1_shift2 (Ptf1a(var.2)) 
; positions_8nt_m3 versus MA1619.1 (Ptf1a(var.2)); m=9/20; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.503774; --rmaCAGCTGtky---
; cor=; Ncor=
a	0	0	1869.0	1978.0	4346.0	49.0	7119.0	34.0	224.0	26.0	27.0	535.0	1221.0	1602.0	0	0	0
c	0	0	1803.0	2430.0	1070.0	7149.0	41.0	307.0	6697.0	66.0	27.0	1312.0	1632.0	1977.0	0	0	0
g	0	0	1974.0	1629.0	1308.0	28.0	65.0	6689.0	299.0	40.0	7150.0	1065.0	2426.0	1803.0	0	0	0
t	0	0	1607.0	1216.0	529.0	27.0	28.0	223.0	33.0	7121.0	49.0	4341.0	1974.0	1871.0	0	0	0
MA0521.1_rc_shift2 (Tcf12_rc) 
; positions_8nt_m3 versus MA0521.1_rc (Tcf12_rc); m=10/20; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.502524; --cwsCAGCTGYy----
; cor=; Ncor=
a	0	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0	0	0
c	0	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0	0	0
g	0	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0	0	0
t	0	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0	0	0
MA0783.1_rc_shift2 (PKNOX2_rc) 
; positions_8nt_m3 versus MA0783.1_rc (PKNOX2_rc); m=11/20; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.499006; --TGACAsCTGTCA---
; cor=; Ncor=
a	0	0	9.0	3.0	1167.0	0.0	1204.0	0.0	118.0	4.0	9.0	6.0	0.0	1192.0	0	0	0
c	0	0	21.0	6.0	5.0	1370.0	0.0	702.0	1298.0	1.0	0.0	13.0	1389.0	9.0	0	0	0
g	0	0	1.0	1265.0	29.0	1.0	4.0	304.0	0.0	0.0	1250.0	3.0	6.0	0.0	0	0	0
t	0	0	1190.0	11.0	10.0	3.0	0.0	39.0	7.0	1169.0	0.0	1124.0	1.0	37.0	0	0	0
MA1100.2_rc_shift3 (ASCL1_rc) 
; positions_8nt_m3 versus MA1100.2_rc (ASCL1_rc); m=12/20; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.484348; ---rgCAGCTGyy----
; cor=; Ncor=
a	0	0	0	1194.0	1349.0	29.0	4413.0	20.0	625.0	218.0	14.0	354.0	726.0	0	0	0	0
c	0	0	0	889.0	814.0	4413.0	121.0	1320.0	4413.0	60.0	0.0	3079.0	1495.0	0	0	0	0
g	0	0	0	1487.0	3065.0	0.0	24.0	4413.0	1288.0	157.0	4413.0	521.0	926.0	0	0	0	0
t	0	0	0	843.0	177.0	52.0	118.0	729.0	107.0	4413.0	0.0	1334.0	1267.0	0	0	0	0
MA1635.1_shift3 (BHLHE22(var.2)) 
; positions_8nt_m3 versus MA1635.1 (BHLHE22(var.2)); m=13/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.48227; ---csCAGCTGsg----
; cor=; Ncor=
a	0	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0	0	0	0
c	0	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0	0	0	0
g	0	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0	0	0	0
t	0	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0	0	0	0
MA0816.1_shift3 (Ascl2) 
; positions_8nt_m3 versus MA0816.1 (Ascl2); m=14/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.454327; ---arCAGCTGyy----
; cor=; Ncor=
a	0	0	0	237.0	128.0	3.0	300.0	7.0	3.0	4.0	0.0	6.0	34.0	0	0	0	0
c	0	0	0	36.0	41.0	300.0	0.0	23.0	300.0	0.0	1.0	206.0	101.0	0	0	0	0
g	0	0	0	63.0	172.0	0.0	0.0	300.0	2.0	0.0	300.0	15.0	28.0	0	0	0	0
t	0	0	0	16.0	1.0	1.0	15.0	18.0	1.0	300.0	2.0	94.0	199.0	0	0	0	0
MA1472.1_shift3 (BHLHA15(var.2)) 
; positions_8nt_m3 versus MA1472.1 (BHLHA15(var.2)); m=15/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.454112; ---avCAGCTGyy----
; cor=; Ncor=
a	0	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0	0	0	0	0
c	0	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0	0	0	0	0
g	0	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0	0	0	0	0
t	0	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0	0	0	0	0
MA1467.1_shift3 (ATOH1(var.2)) 
; positions_8nt_m3 versus MA1467.1 (ATOH1(var.2)); m=16/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.442288; ---AACAGCTGTY----
; cor=; Ncor=
a	0	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0	0	0	0
c	0	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0	0	0	0
g	0	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0	0	0	0
t	0	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0	0	0	0
MA0048.2_shift3 (NHLH1) 
; positions_8nt_m3 versus MA0048.2 (NHLH1); m=17/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.426147; ---cGCAGCTGCk----
; cor=; Ncor=
a	0	0	0	788.0	461.0	3.0	2166.0	0.0	96.0	0.0	2.0	296.0	308.0	0	0	0	0
c	0	0	0	2166.0	179.0	2166.0	3.0	301.0	2166.0	4.0	4.0	2166.0	736.0	0	0	0	0
g	0	0	0	181.0	2166.0	0.0	1.0	2166.0	124.0	4.0	2166.0	102.0	2166.0	0	0	0	0
t	0	0	0	111.0	142.0	0.0	0.0	114.0	0.0	2166.0	1.0	350.0	1489.0	0	0	0	0
MA0597.1_shift8 (THAP1) 
; positions_8nt_m3 versus MA0597.1 (THAP1); m=18/20; ncol2=9; w=9; offset=8; strand=D; shift=8; score=0.410897; --------ytGCCMkya
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	18.0	15.0	20.0	7.0	3.0	58.0	47.0	30.0	116.0
c	0	0	0	0	0	0	0	0	93.0	47.0	0.0	182.0	195.0	136.0	17.0	71.0	34.0
g	0	0	0	0	0	0	0	0	27.0	12.0	137.0	0.0	0.0	1.0	77.0	41.0	17.0
t	0	0	0	0	0	0	0	0	61.0	125.0	42.0	10.0	1.0	4.0	58.0	57.0	32.0
MA0671.1_shift0 (NFIX) 
; positions_8nt_m3 versus MA0671.1 (NFIX); m=19/20; ncol2=9; w=9; offset=0; strand=D; shift=0; score=0.40775; sgtGCCArv--------
; cor=; Ncor=
a	7951.0	7832.0	11279.0	132.0	3.0	0.0	32864.0	32864.0	8251.0	0	0	0	0	0	0	0	0
c	8810.0	6134.0	9695.0	186.0	32864.0	32864.0	2230.0	1356.0	9039.0	0	0	0	0	0	0	0	0
g	8725.0	10855.0	5911.0	32864.0	3257.0	0.0	180.0	12688.0	9135.0	0	0	0	0	0	0	0	0
t	7378.0	8043.0	32864.0	2539.0	29.0	0.0	110.0	2399.0	6439.0	0	0	0	0	0	0	0	0
MA0739.1_shift8 (Hic1) 
; positions_8nt_m3 versus MA0739.1 (Hic1); m=20/20; ncol2=9; w=9; offset=8; strand=D; shift=8; score=0.403386; --------rTGCCAaCc
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	6337.0	62.0	950.0	50.0	88.0	9008.0	6140.0	1220.0	1610.0
c	0	0	0	0	0	0	0	0	719.0	422.0	588.0	11007.0	11007.0	1999.0	1986.0	11007.0	4822.0
g	0	0	0	0	0	0	0	0	4670.0	73.0	11007.0	121.0	31.0	3.0	2267.0	1629.0	1884.0
t	0	0	0	0	0	0	0	0	666.0	11007.0	183.0	0.0	68.0	317.0	614.0	1488.0	2692.0