Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32.tf
		file1	1	14	4414
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_8nt_m32 MA1631.1 positions_8nt_m32positions_8nt_m32 ASCL1(var.2) 0.894 0.830 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_8nt_m32 MA0830.2 positions_8nt_m32positions_8nt_m32 TCF4 0.873 0.811 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_8nt_m32 MA1621.1 positions_8nt_m32positions_8nt_m32 Rbpjl 0.780 0.780 14 14 14 14 1.0000 1.0000 1.0000 D 0
positions_8nt_m32 MA1648.1 positions_8nt_m32positions_8nt_m32 TCF12(var.2) 0.922 0.725 14 11 11 14 0.7857 0.7857 1.0000 D 2
positions_8nt_m32 MA0522.3 positions_8nt_m32positions_8nt_m32 TCF3 0.916 0.720 14 11 11 14 0.7857 0.7857 1.0000 D 2
positions_8nt_m32 MA0745.2 positions_8nt_m32positions_8nt_m32 SNAI2 0.756 0.702 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_8nt_m32 MA0499.2 positions_8nt_m32positions_8nt_m32 MYOD1 0.734 0.682 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_8nt_m32 MA0103.3 positions_8nt_m32positions_8nt_m32 ZEB1 0.867 0.681 14 11 11 14 0.7857 0.7857 1.0000 D 2
positions_8nt_m32 MA1620.1 positions_8nt_m32positions_8nt_m32 Ptf1a(var.3) 0.777 0.666 14 12 12 14 0.8571 0.8571 1.0000 D 1
positions_8nt_m32 MA1109.1 positions_8nt_m32positions_8nt_m32 NEUROD1 0.705 0.654 14 13 13 14 0.9286 0.9286 1.0000 R 0
positions_8nt_m32 MA1642.1 positions_8nt_m32positions_8nt_m32 NEUROG2(var.2) 0.700 0.650 14 13 13 14 0.9286 0.9286 1.0000 R 1
positions_8nt_m32 MA0147.3 positions_8nt_m32positions_8nt_m32 MYC 0.745 0.639 14 12 12 14 0.8571 0.8571 1.0000 D 1
positions_8nt_m32 MA1558.1 positions_8nt_m32positions_8nt_m32 SNAI1 0.875 0.625 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m32 MA0500.2 positions_8nt_m32positions_8nt_m32 MYOG 0.718 0.616 14 12 12 14 0.8571 0.8571 1.0000 D 1
positions_8nt_m32 MA1102.2 positions_8nt_m32positions_8nt_m32 CTCFL 0.702 0.602 14 12 12 14 0.8571 0.8571 1.0000 R 0
positions_8nt_m32 MA1559.1 positions_8nt_m32positions_8nt_m32 SNAI3 0.840 0.600 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m32 MA0820.1 positions_8nt_m32positions_8nt_m32 FIGLA 0.823 0.588 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m32 MA0744.2 positions_8nt_m32positions_8nt_m32 SCRT2 0.763 0.584 14 16 13 17 0.7647 0.9286 0.8125 R 1
positions_8nt_m32 MA0521.1 positions_8nt_m32positions_8nt_m32 Tcf12 0.743 0.583 14 11 11 14 0.7857 0.7857 1.0000 R 1
positions_8nt_m32 MA0743.2 positions_8nt_m32positions_8nt_m32 SCRT1 0.762 0.583 14 16 13 17 0.7647 0.9286 0.8125 R 1
positions_8nt_m32 MA0059.1 positions_8nt_m32positions_8nt_m32 MAX::MYC 0.731 0.574 14 11 11 14 0.7857 0.7857 1.0000 R 2
positions_8nt_m32 MA1100.2 positions_8nt_m32positions_8nt_m32 ASCL1 0.780 0.557 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m32 MA1628.1 positions_8nt_m32positions_8nt_m32 Zic1::Zic2 0.825 0.550 14 11 10 15 0.6667 0.7143 0.9091 R 4
positions_8nt_m32 MA0816.1 positions_8nt_m32positions_8nt_m32 Ascl2 0.762 0.544 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m32 MA1629.1 positions_8nt_m32positions_8nt_m32 Zic2 0.812 0.525 14 14 11 17 0.6471 0.7857 0.7857 R 3
positions_8nt_m32 MA1472.1 positions_8nt_m32positions_8nt_m32 BHLHA15(var.2) 0.723 0.516 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_8nt_m32 MA0048.2 positions_8nt_m32positions_8nt_m32 NHLH1 0.721 0.515 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m32 MA0058.3 positions_8nt_m32positions_8nt_m32 MAX 0.707 0.505 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_8nt_m32 MA1585.1 positions_8nt_m32positions_8nt_m32 ZKSCAN1 0.701 0.501 14 10 10 14 0.7143 0.7143 1.0000 R 4
positions_8nt_m32 MA0807.1 positions_8nt_m32positions_8nt_m32 TBX5 0.806 0.461 14 8 8 14 0.5714 0.5714 1.0000 R 1
positions_8nt_m32 MA0806.1 positions_8nt_m32positions_8nt_m32 TBX4 0.782 0.447 14 8 8 14 0.5714 0.5714 1.0000 R 1
positions_8nt_m32 MA0803.1 positions_8nt_m32positions_8nt_m32 TBX15 0.745 0.426 14 8 8 14 0.5714 0.5714 1.0000 R 1
positions_8nt_m32 MA0622.1 positions_8nt_m32positions_8nt_m32 Mlxip 0.728 0.416 14 8 8 14 0.5714 0.5714 1.0000 R 3
positions_8nt_m32 MA0805.1 positions_8nt_m32positions_8nt_m32 TBX1 0.721 0.412 14 8 8 14 0.5714 0.5714 1.0000 R 1
positions_8nt_m32 MA0801.1 positions_8nt_m32positions_8nt_m32 MGA 0.704 0.402 14 8 8 14 0.5714 0.5714 1.0000 R 1 
 Host name	pedagogix
 Job started	2020-04-14.170908
 Job done	2020-04-14.170959
 Seconds	7.82
	user	7.82
	system	0.88
	cuser	40.89
;	csystem	2.15