One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m32/peak-motifs_positions_8nt_m32_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m32_shift0 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m32_shift0 (positions_8nt_m32positions_8nt_m32)
; positions_8nt_m32 (positions_8nt_m32positions_8nt_m32); m=0 (reference); ncol1=14; shift=0; ncol=17; ssgcCACCTGCTsy--- ; Alignment reference a 863 912 724 677 13 4215 52 65 52 43 24 54 501 637 0 0 0 c 1408 1245 794 2513 4372 59 4024 4271 37 81 4110 166 1453 1769 0 0 0 g 1242 1166 2315 886 15 87 197 48 39 4250 64 40 1765 871 0 0 0 t 901 1091 581 338 14 53 141 30 4286 40 216 4154 695 1137 0 0 0

MA1631.1_shift1 (ASCL1(var.2))
; positions_8nt_m32 versus MA1631.1 (ASCL1(var.2)); m=1/35; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.829734; -cdgCACCTGCysc--- ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0

MA0830.2_shift1 (TCF4)
; positions_8nt_m32 versus MA0830.2 (TCF4); m=2/35; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.810628; -cggCACCTGccss--- ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0

MA1621.1_shift0 (Rbpjl)
; positions_8nt_m32 versus MA1621.1 (Rbpjl); m=3/35; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.780484; svmaCACCTGtsyc--- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0

MA1648.1_shift2 (TCF12(var.2))
; positions_8nt_m32 versus MA1648.1 (TCF12(var.2)); m=4/35; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.724676; --ssCACCTGCys---- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0

MA0522.3_shift2 (TCF3)
; positions_8nt_m32 versus MA0522.3 (TCF3); m=5/35; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.71992; --svCACCTGCss---- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0 0

MA0745.2_shift1 (SNAI2)
; positions_8nt_m32 versus MA0745.2 (SNAI2); m=6/35; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.702294; -aygCACCTGTmry--- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0

MA0499.2_shift1 (MYOD1)
; positions_8nt_m32 versus MA0499.2 (MYOD1); m=7/35; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.681534; -cwgCACCTGTymy--- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0

MA0103.3_shift2 (ZEB1)
; positions_8nt_m32 versus MA0103.3 (ZEB1); m=8/35; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.681227; --ssCACCTGsss---- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0

MA1620.1_shift1 (Ptf1a(var.3))
; positions_8nt_m32 versus MA1620.1 (Ptf1a(var.3)); m=9/35; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.665807; -rmaCACCTGtky---- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0

MA1109.1_rc_shift0 (NEUROD1_rc)
; positions_8nt_m32 versus MA1109.1_rc (NEUROD1_rc); m=10/35; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.654219; syrCCATCTGtyc---- ; cor=; Ncor= a 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 0 0 c 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 0 0 g 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 0 0 t 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0 0 0

MA1642.1_rc_shift1 (NEUROG2(var.2)_rc)
; positions_8nt_m32 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=11/35; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.650376; -brCCATCTGtyyy--- ; cor=; Ncor= a 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 0 0 0 c 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 0 0 0 g 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 0 0 0 t 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0 0 0 0

MA0147.3_shift1 (MYC)
; positions_8nt_m32 versus MA0147.3 (MYC); m=12/35; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.638535; -ssCCACGTGcys---- ; cor=; Ncor= a 0 1038.0 1019.0 438.0 44.0 4600.0 54.0 169.0 59.0 23.0 419.0 961.0 755.0 0 0 0 0 c 0 1345.0 1287.0 3746.0 4840.0 59.0 4525.0 157.0 162.0 56.0 2801.0 1524.0 1785.0 0 0 0 0 g 0 1649.0 1757.0 472.0 31.0 170.0 70.0 4578.0 63.0 4817.0 1198.0 1036.0 1348.0 0 0 0 0 t 0 910.0 879.0 286.0 27.0 113.0 293.0 38.0 4658.0 46.0 524.0 1421.0 1054.0 0 0 0 0

MA1558.1_rc_shift2 (SNAI1_rc)
; positions_8nt_m32 versus MA1558.1_rc (SNAI1_rc); m=13/35; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.625282; --yrCACCTGyh----- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0

MA0500.2_shift1 (MYOG)
; positions_8nt_m32 versus MA0500.2 (MYOG); m=14/35; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.615744; -sarCAGCTGyts---- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0

MA1102.2_rc_shift0 (CTCFL_rc)
; positions_8nt_m32 versus MA1102.2_rc (CTCFL_rc); m=15/35; ncol2=12; w=12; offset=0; strand=R; shift=0; score=0.601955; scGCCCCCTGsy----- ; cor=; Ncor= a 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 0 0 0 0 c 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 0 0 0 0 g 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 0 0 0 0 t 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0 0 0 0 0

MA1559.1_rc_shift2 (SNAI3_rc)
; positions_8nt_m32 versus MA1559.1_rc (SNAI3_rc); m=16/35; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.599953; --trCACCTGyt----- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0

MA0820.1_shift2 (FIGLA)
; positions_8nt_m32 versus MA0820.1 (FIGLA); m=17/35; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.587679; --wmCACCTGkw----- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0

MA0744.2_rc_shift1 (SCRT2_rc)
; positions_8nt_m32 versus MA0744.2_rc (SCRT2_rc); m=18/35; ncol2=16; w=13; offset=1; strand=R; shift=1; score= 0.5835; -waccACCTGTTGmwyy ; cor=; Ncor= a 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 12071.0 15730.0 c 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 17497.0 17680.0 g 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 12732.0 13345.0 t 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0 23310.0 18855.0

MA0521.1_rc_shift1 (Tcf12_rc)
; positions_8nt_m32 versus MA0521.1_rc (Tcf12_rc); m=19/35; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.58343; -cwsCAGCTGYy----- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0

MA0743.2_rc_shift1 (SCRT1_rc)
; positions_8nt_m32 versus MA0743.2_rc (SCRT1_rc); m=20/35; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.582799; -wacCACCTGTTGmwtw ; cor=; Ncor= a 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 12449.0 15464.0 c 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 14514.0 14307.0 g 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 10314.0 14118.0 t 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0 22932.0 16320.0

MA0059.1_rc_shift2 (MAX::MYC_rc)
; positions_8nt_m32 versus MA0059.1_rc (MAX::MYC_rc); m=21/35; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.574209; --aCCACGTGsTy---- ; cor=; Ncor= a 0 0 13.0 1.0 0.0 20.0 0.0 1.0 0.0 0.0 1.0 1.0 4.0 0 0 0 0 c 0 0 0.0 18.0 21.0 0.0 20.0 0.0 0.0 0.0 9.0 4.0 9.0 0 0 0 0 g 0 0 5.0 1.0 0.0 1.0 0.0 20.0 0.0 20.0 9.0 1.0 1.0 0 0 0 0 t 0 0 3.0 1.0 0.0 0.0 1.0 0.0 21.0 1.0 2.0 15.0 7.0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; positions_8nt_m32 versus MA1100.2_rc (ASCL1_rc); m=22/35; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.557321; --rgCAGCTGyy----- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0

MA1628.1_rc_shift4 (Zic1::Zic2_rc)
; positions_8nt_m32 versus MA1628.1_rc (Zic1::Zic2_rc); m=23/35; ncol2=11; w=10; offset=4; strand=R; shift=4; score=0.550125; ----ysCCTGCTGbg-- ; cor=; Ncor= a 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 0 c 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 0 g 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 0 t 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0 0

MA0816.1_shift2 (Ascl2)
; positions_8nt_m32 versus MA0816.1 (Ascl2); m=24/35; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.543971; --arCAGCTGyy----- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0

MA1629.1_rc_shift3 (Zic2_rc)
; positions_8nt_m32 versus MA1629.1_rc (Zic2_rc); m=25/35; ncol2=14; w=11; offset=3; strand=R; shift=3; score=0.525439; ---cyyCCTGCTGtGmk ; cor=; Ncor= a 0 0 0 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 2506.0 c 0 0 0 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 2761.0 g 0 0 0 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 3507.0 t 0 0 0 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0 3145.0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; positions_8nt_m32 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=26/35; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.516125; --rrCAGCTGbt----- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0

MA0048.2_shift2 (NHLH1)
; positions_8nt_m32 versus MA0048.2 (NHLH1); m=27/35; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.51522; --cGCAGCTGCk----- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0

MA0058.3_shift2 (MAX)
; positions_8nt_m32 versus MA0058.3 (MAX); m=28/35; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.504658; --amCACGTGcy----- ; cor=; Ncor= a 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 0 0 0 0 c 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 0 0 0 0 g 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 0 0 0 0 t 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0 0 0 0 0

MA1585.1_rc_shift4 (ZKSCAN1_rc)
; positions_8nt_m32 versus MA1585.1_rc (ZKSCAN1_rc); m=29/35; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.500809; ----caCCTACTrT--- ; cor=; Ncor= a 0 0 0 0 494.0 3469.0 27.0 34.0 0.0 6127.0 12.0 0.0 3308.0 454.0 0 0 0 c 0 0 0 0 2880.0 750.0 6075.0 5980.0 0.0 0.0 6092.0 20.0 364.0 584.0 0 0 0 g 0 0 0 0 1480.0 1303.0 12.0 101.0 48.0 0.0 5.0 53.0 2268.0 456.0 0 0 0 t 0 0 0 0 1273.0 605.0 13.0 12.0 6079.0 0.0 18.0 6054.0 187.0 4633.0 0 0 0

MA0807.1_rc_shift1 (TBX5_rc)
; positions_8nt_m32 versus MA0807.1_rc (TBX5_rc); m=30/35; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.460619; -TmACACCT-------- ; cor=; Ncor= a 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 0 c 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 0 g 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 0 t 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0 0

MA0806.1_rc_shift1 (TBX4_rc)
; positions_8nt_m32 versus MA0806.1_rc (TBX4_rc); m=31/35; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.447015; -TcACACCT-------- ; cor=; Ncor= a 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 0 0 c 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 0 0 g 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 0 0 t 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0 0 0

MA0803.1_rc_shift1 (TBX15_rc)
; positions_8nt_m32 versus MA0803.1_rc (TBX15_rc); m=32/35; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.425821; -TCACACCT-------- ; cor=; Ncor= a 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 0 0 0 c 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 0 0 0 g 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 0 0 0 t 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0 0 0 0

MA0622.1_rc_shift3 (Mlxip_rc)
; positions_8nt_m32 versus MA0622.1_rc (Mlxip_rc); m=33/35; ncol2=8; w=8; offset=3; strand=R; shift=3; score=0.416183; ---mCACGTGv------ ; cor=; Ncor= a 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 0 0 0 0 c 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 0 0 0 0 g 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 0 0 0 0 t 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0 0 0 0 0

MA0805.1_rc_shift1 (TBX1_rc)
; positions_8nt_m32 versus MA0805.1_rc (TBX1_rc); m=34/35; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.412183; -TCACACCT-------- ; cor=; Ncor= a 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 0 0 0 c 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 0 0 0 g 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 0 0 0 t 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0 0 0 0

MA0801.1_rc_shift1 (MGA_rc)
; positions_8nt_m32 versus MA0801.1_rc (MGA_rc); m=35/35; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.402204; -TCACACCT-------- ; cor=; Ncor= a 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 0 0 0 0 c 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 0 0 0 0 g 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 0 0 0 0 t 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_8nt_m32_shift0 (positions_8nt_m32positions_8nt_m32)				; positions_8nt_m32 (positions_8nt_m32positions_8nt_m32); m=0 (reference); ncol1=14; shift=0; ncol=17; ssgcCACCTGCTsy--- ; Alignment reference a 863 912 724 677 13 4215 52 65 52 43 24 54 501 637 0 0 0 c 1408 1245 794 2513 4372 59 4024 4271 37 81 4110 166 1453 1769 0 0 0 g 1242 1166 2315 886 15 87 197 48 39 4250 64 40 1765 871 0 0 0 t 901 1091 581 338 14 53 141 30 4286 40 216 4154 695 1137 0 0 0
MA1631.1_shift1 (ASCL1(var.2))				; positions_8nt_m32 versus MA1631.1 (ASCL1(var.2)); m=1/35; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.829734; -cdgCACCTGCysc--- ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0
MA0830.2_shift1 (TCF4)				; positions_8nt_m32 versus MA0830.2 (TCF4); m=2/35; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.810628; -cggCACCTGccss--- ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0
MA1621.1_shift0 (Rbpjl)				; positions_8nt_m32 versus MA1621.1 (Rbpjl); m=3/35; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.780484; svmaCACCTGtsyc--- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0
MA1648.1_shift2 (TCF12(var.2))				; positions_8nt_m32 versus MA1648.1 (TCF12(var.2)); m=4/35; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.724676; --ssCACCTGCys---- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0
MA0522.3_shift2 (TCF3)				; positions_8nt_m32 versus MA0522.3 (TCF3); m=5/35; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.71992; --svCACCTGCss---- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0 0
MA0745.2_shift1 (SNAI2)				; positions_8nt_m32 versus MA0745.2 (SNAI2); m=6/35; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.702294; -aygCACCTGTmry--- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0
MA0499.2_shift1 (MYOD1)				; positions_8nt_m32 versus MA0499.2 (MYOD1); m=7/35; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.681534; -cwgCACCTGTymy--- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0
MA0103.3_shift2 (ZEB1)				; positions_8nt_m32 versus MA0103.3 (ZEB1); m=8/35; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.681227; --ssCACCTGsss---- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0
MA1620.1_shift1 (Ptf1a(var.3))				; positions_8nt_m32 versus MA1620.1 (Ptf1a(var.3)); m=9/35; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.665807; -rmaCACCTGtky---- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0
MA1109.1_rc_shift0 (NEUROD1_rc)				; positions_8nt_m32 versus MA1109.1_rc (NEUROD1_rc); m=10/35; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.654219; syrCCATCTGtyc---- ; cor=; Ncor= a 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 0 0 c 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 0 0 g 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 0 0 t 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0 0 0
MA1642.1_rc_shift1 (NEUROG2(var.2)_rc)				; positions_8nt_m32 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=11/35; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.650376; -brCCATCTGtyyy--- ; cor=; Ncor= a 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 0 0 0 c 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 0 0 0 g 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 0 0 0 t 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0 0 0 0
MA0147.3_shift1 (MYC)				; positions_8nt_m32 versus MA0147.3 (MYC); m=12/35; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.638535; -ssCCACGTGcys---- ; cor=; Ncor= a 0 1038.0 1019.0 438.0 44.0 4600.0 54.0 169.0 59.0 23.0 419.0 961.0 755.0 0 0 0 0 c 0 1345.0 1287.0 3746.0 4840.0 59.0 4525.0 157.0 162.0 56.0 2801.0 1524.0 1785.0 0 0 0 0 g 0 1649.0 1757.0 472.0 31.0 170.0 70.0 4578.0 63.0 4817.0 1198.0 1036.0 1348.0 0 0 0 0 t 0 910.0 879.0 286.0 27.0 113.0 293.0 38.0 4658.0 46.0 524.0 1421.0 1054.0 0 0 0 0
MA1558.1_rc_shift2 (SNAI1_rc)				; positions_8nt_m32 versus MA1558.1_rc (SNAI1_rc); m=13/35; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.625282; --yrCACCTGyh----- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0
MA0500.2_shift1 (MYOG)				; positions_8nt_m32 versus MA0500.2 (MYOG); m=14/35; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.615744; -sarCAGCTGyts---- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0
MA1102.2_rc_shift0 (CTCFL_rc)				; positions_8nt_m32 versus MA1102.2_rc (CTCFL_rc); m=15/35; ncol2=12; w=12; offset=0; strand=R; shift=0; score=0.601955; scGCCCCCTGsy----- ; cor=; Ncor= a 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 0 0 0 0 c 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 0 0 0 0 g 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 0 0 0 0 t 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0 0 0 0 0
MA1559.1_rc_shift2 (SNAI3_rc)				; positions_8nt_m32 versus MA1559.1_rc (SNAI3_rc); m=16/35; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.599953; --trCACCTGyt----- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0
MA0820.1_shift2 (FIGLA)				; positions_8nt_m32 versus MA0820.1 (FIGLA); m=17/35; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.587679; --wmCACCTGkw----- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0
MA0744.2_rc_shift1 (SCRT2_rc)				; positions_8nt_m32 versus MA0744.2_rc (SCRT2_rc); m=18/35; ncol2=16; w=13; offset=1; strand=R; shift=1; score= 0.5835; -waccACCTGTTGmwyy ; cor=; Ncor= a 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 12071.0 15730.0 c 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 17497.0 17680.0 g 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 12732.0 13345.0 t 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0 23310.0 18855.0
MA0521.1_rc_shift1 (Tcf12_rc)				; positions_8nt_m32 versus MA0521.1_rc (Tcf12_rc); m=19/35; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.58343; -cwsCAGCTGYy----- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0
MA0743.2_rc_shift1 (SCRT1_rc)				; positions_8nt_m32 versus MA0743.2_rc (SCRT1_rc); m=20/35; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.582799; -wacCACCTGTTGmwtw ; cor=; Ncor= a 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 12449.0 15464.0 c 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 14514.0 14307.0 g 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 10314.0 14118.0 t 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0 22932.0 16320.0
MA0059.1_rc_shift2 (MAX::MYC_rc)				; positions_8nt_m32 versus MA0059.1_rc (MAX::MYC_rc); m=21/35; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.574209; --aCCACGTGsTy---- ; cor=; Ncor= a 0 0 13.0 1.0 0.0 20.0 0.0 1.0 0.0 0.0 1.0 1.0 4.0 0 0 0 0 c 0 0 0.0 18.0 21.0 0.0 20.0 0.0 0.0 0.0 9.0 4.0 9.0 0 0 0 0 g 0 0 5.0 1.0 0.0 1.0 0.0 20.0 0.0 20.0 9.0 1.0 1.0 0 0 0 0 t 0 0 3.0 1.0 0.0 0.0 1.0 0.0 21.0 1.0 2.0 15.0 7.0 0 0 0 0
MA1100.2_rc_shift2 (ASCL1_rc)				; positions_8nt_m32 versus MA1100.2_rc (ASCL1_rc); m=22/35; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.557321; --rgCAGCTGyy----- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0
MA1628.1_rc_shift4 (Zic1::Zic2_rc)				; positions_8nt_m32 versus MA1628.1_rc (Zic1::Zic2_rc); m=23/35; ncol2=11; w=10; offset=4; strand=R; shift=4; score=0.550125; ----ysCCTGCTGbg-- ; cor=; Ncor= a 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 0 c 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 0 g 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 0 t 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0 0
MA0816.1_shift2 (Ascl2)				; positions_8nt_m32 versus MA0816.1 (Ascl2); m=24/35; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.543971; --arCAGCTGyy----- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0
MA1629.1_rc_shift3 (Zic2_rc)				; positions_8nt_m32 versus MA1629.1_rc (Zic2_rc); m=25/35; ncol2=14; w=11; offset=3; strand=R; shift=3; score=0.525439; ---cyyCCTGCTGtGmk ; cor=; Ncor= a 0 0 0 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 2506.0 c 0 0 0 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 2761.0 g 0 0 0 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 3507.0 t 0 0 0 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0 3145.0
MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)				; positions_8nt_m32 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=26/35; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.516125; --rrCAGCTGbt----- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0
MA0048.2_shift2 (NHLH1)				; positions_8nt_m32 versus MA0048.2 (NHLH1); m=27/35; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.51522; --cGCAGCTGCk----- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0
MA0058.3_shift2 (MAX)				; positions_8nt_m32 versus MA0058.3 (MAX); m=28/35; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.504658; --amCACGTGcy----- ; cor=; Ncor= a 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 0 0 0 0 c 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 0 0 0 0 g 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 0 0 0 0 t 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0 0 0 0 0
MA1585.1_rc_shift4 (ZKSCAN1_rc)				; positions_8nt_m32 versus MA1585.1_rc (ZKSCAN1_rc); m=29/35; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.500809; ----caCCTACTrT--- ; cor=; Ncor= a 0 0 0 0 494.0 3469.0 27.0 34.0 0.0 6127.0 12.0 0.0 3308.0 454.0 0 0 0 c 0 0 0 0 2880.0 750.0 6075.0 5980.0 0.0 0.0 6092.0 20.0 364.0 584.0 0 0 0 g 0 0 0 0 1480.0 1303.0 12.0 101.0 48.0 0.0 5.0 53.0 2268.0 456.0 0 0 0 t 0 0 0 0 1273.0 605.0 13.0 12.0 6079.0 0.0 18.0 6054.0 187.0 4633.0 0 0 0
MA0807.1_rc_shift1 (TBX5_rc)				; positions_8nt_m32 versus MA0807.1_rc (TBX5_rc); m=30/35; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.460619; -TmACACCT-------- ; cor=; Ncor= a 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 0 c 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 0 g 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 0 t 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0 0
MA0806.1_rc_shift1 (TBX4_rc)				; positions_8nt_m32 versus MA0806.1_rc (TBX4_rc); m=31/35; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.447015; -TcACACCT-------- ; cor=; Ncor= a 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 0 0 c 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 0 0 g 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 0 0 t 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0 0 0
MA0803.1_rc_shift1 (TBX15_rc)				; positions_8nt_m32 versus MA0803.1_rc (TBX15_rc); m=32/35; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.425821; -TCACACCT-------- ; cor=; Ncor= a 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 0 0 0 c 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 0 0 0 g 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 0 0 0 t 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0 0 0 0
MA0622.1_rc_shift3 (Mlxip_rc)				; positions_8nt_m32 versus MA0622.1_rc (Mlxip_rc); m=33/35; ncol2=8; w=8; offset=3; strand=R; shift=3; score=0.416183; ---mCACGTGv------ ; cor=; Ncor= a 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 0 0 0 0 c 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 0 0 0 0 g 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 0 0 0 0 t 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0 0 0 0 0
MA0805.1_rc_shift1 (TBX1_rc)				; positions_8nt_m32 versus MA0805.1_rc (TBX1_rc); m=34/35; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.412183; -TCACACCT-------- ; cor=; Ncor= a 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 0 0 0 c 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 0 0 0 g 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 0 0 0 t 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0 0 0 0
MA0801.1_rc_shift1 (MGA_rc)				; positions_8nt_m32 versus MA0801.1_rc (MGA_rc); m=35/35; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.402204; -TCACACCT-------- ; cor=; Ncor= a 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 0 0 0 0 c 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 0 0 0 0 g 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 0 0 0 0 t 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0 0 0 0 0