One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m34/peak-motifs_positions_8nt_m34.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m34/peak-motifs_positions_8nt_m34_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m34_shift0 ; 23 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_8nt_m34_shift0 (positions_8nt_m34positions_8nt_m34)     
; positions_8nt_m34 (positions_8nt_m34positions_8nt_m34); m=0 (reference); ncol1=16; shift=0; ncol=16; sssCACAGCTGTTCyb
; Alignment reference
a	520	499	449	115	1775	3	2084	13	16	5	7	46	28	71	476	326
c	555	574	613	1843	138	2089	5	76	2046	6	16	258	189	1796	759	646
g	582	617	569	117	57	10	6	2009	25	3	2075	56	194	152	169	561
t	452	419	478	34	139	7	14	11	22	2095	11	1749	1698	90	705	576
MA0832.1_rc_shift1 (Tcf21_rc) 
; positions_8nt_m34 versus MA0832.1_rc (Tcf21_rc); m=1/22; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.725652; -ryAACAGCTGTTry-
; cor=; Ncor=
a	0	60.0	19.0	171.0	171.0	0.0	171.0	1.0	2.0	0.0	0.0	0.0	3.0	46.0	17.0	0
c	0	32.0	80.0	0.0	20.0	171.0	0.0	1.0	171.0	0.0	0.0	0.0	23.0	22.0	70.0	0
g	0	49.0	23.0	23.0	4.0	0.0	0.0	171.0	0.0	1.0	171.0	10.0	1.0	76.0	29.0	0
t	0	30.0	50.0	5.0	0.0	0.0	0.0	0.0	0.0	171.0	0.0	171.0	171.0	28.0	55.0	0
MA1641.1_shift2 (MYF5) 
; positions_8nt_m34 versus MA1641.1 (MYF5); m=2/22; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.670921; --gvaCAGCTGtbc--
; cor=; Ncor=
a	0	0	2698.0	3507.0	7490.0	95.0	10965.0	100.0	223.0	129.0	42.0	578.0	1572.0	2554.0	0	0
c	0	0	2700.0	2986.0	1368.0	10911.0	47.0	230.0	10657.0	68.0	161.0	1775.0	3146.0	3258.0	0	0
g	0	0	3258.0	3145.0	1774.0	161.0	69.0	10658.0	230.0	47.0	10912.0	1368.0	2985.0	2701.0	0	0
t	0	0	2554.0	1572.0	578.0	43.0	129.0	222.0	100.0	10966.0	95.0	7489.0	3507.0	2697.0	0	0
MA1619.1_shift2 (Ptf1a(var.2)) 
; positions_8nt_m34 versus MA1619.1 (Ptf1a(var.2)); m=3/22; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.668219; --rmaCAGCTGtky--
; cor=; Ncor=
a	0	0	1869.0	1978.0	4346.0	49.0	7119.0	34.0	224.0	26.0	27.0	535.0	1221.0	1602.0	0	0
c	0	0	1803.0	2430.0	1070.0	7149.0	41.0	307.0	6697.0	66.0	27.0	1312.0	1632.0	1977.0	0	0
g	0	0	1974.0	1629.0	1308.0	28.0	65.0	6689.0	299.0	40.0	7150.0	1065.0	2426.0	1803.0	0	0
t	0	0	1607.0	1216.0	529.0	27.0	28.0	223.0	33.0	7121.0	49.0	4341.0	1974.0	1871.0	0	0
MA1621.1_shift1 (Rbpjl) 
; positions_8nt_m34 versus MA1621.1 (Rbpjl); m=4/22; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.652158; -svmaCACCTGtsyc-
; cor=; Ncor=
a	0	2006.0	2466.0	3369.0	6005.0	139.0	9386.0	84.0	234.0	63.0	102.0	569.0	1539.0	2273.0	2082.0	0
c	0	2881.0	2427.0	3117.0	1373.0	9273.0	70.0	8533.0	9005.0	144.0	131.0	1718.0	3247.0	2884.0	3003.0	0
g	0	2476.0	2549.0	1802.0	1492.0	103.0	110.0	672.0	317.0	132.0	9295.0	1581.0	2687.0	1958.0	2281.0	0
t	0	2289.0	2210.0	1364.0	782.0	137.0	86.0	363.0	96.0	9313.0	124.0	5784.0	2179.0	2537.0	2286.0	0
MA1485.1_rc_shift1 (FERD3L_rc) 
; positions_8nt_m34 versus MA1485.1_rc (FERD3L_rc); m=5/22; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.62678; -GTrACAGCTGkyrC-
; cor=; Ncor=
a	0	48.0	958.0	14919.0	21065.0	0.0	29605.0	0.0	4691.0	144.0	0.0	1710.0	74.0	9557.0	225.0	0
c	0	0.0	9815.0	5920.0	3395.0	29605.0	210.0	471.0	29605.0	118.0	0.0	3142.0	12703.0	348.0	29605.0	0
g	0	29605.0	809.0	8664.0	3878.0	0.0	129.0	29605.0	841.0	126.0	29605.0	9363.0	2443.0	20049.0	68.0	0
t	0	0.0	29605.0	103.0	1268.0	0.0	81.0	3649.0	0.0	29605.0	36.0	15390.0	14384.0	450.0	2158.0	0
MA1618.1_shift2 (Ptf1a) 
; positions_8nt_m34 versus MA1618.1 (Ptf1a); m=6/22; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.624041; --dmaCAGATGttkh-
; cor=; Ncor=
a	0	0	4092.0	4476.0	8554.0	133.0	14064.0	250.0	12132.0	126.0	241.0	965.0	1511.0	3491.0	3754.0	0
c	0	0	2989.0	3662.0	2747.0	14006.0	118.0	466.0	1724.0	224.0	122.0	2058.0	2341.0	3601.0	3689.0	0
g	0	0	3661.0	3568.0	2414.0	130.0	153.0	13072.0	437.0	118.0	13868.0	2854.0	2295.0	3664.0	3376.0	0
t	0	0	3699.0	2735.0	726.0	172.0	106.0	653.0	148.0	13973.0	210.0	8564.0	8294.0	3685.0	3622.0	0
MA0500.2_shift2 (MYOG) 
; positions_8nt_m34 versus MA0500.2 (MYOG); m=7/22; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.606464; --sarCAGCTGyts--
; cor=; Ncor=
a	0	0	5310.0	8428.0	7159.0	86.0	21782.0	95.0	167.0	163.0	182.0	1667.0	4667.0	5018.0	0	0
c	0	0	6381.0	3754.0	2730.0	21988.0	176.0	130.0	21964.0	238.0	102.0	10792.0	5497.0	5660.0	0	0
g	0	0	5596.0	5483.0	10790.0	101.0	236.0	21963.0	131.0	179.0	21985.0	2706.0	3718.0	6369.0	0	0
t	0	0	5070.0	4692.0	1678.0	182.0	163.0	169.0	95.0	21777.0	88.0	7192.0	8475.0	5310.0	0	0
MA0521.1_rc_shift2 (Tcf12_rc) 
; positions_8nt_m34 versus MA0521.1_rc (Tcf12_rc); m=8/22; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.591592; --cwsCAGCTGYy---
; cor=; Ncor=
a	0	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0	0
c	0	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0	0
g	0	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0	0
t	0	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0	0
MA1620.1_shift2 (Ptf1a(var.3)) 
; positions_8nt_m34 versus MA1620.1 (Ptf1a(var.3)); m=9/22; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.583714; --rmaCACCTGtky--
; cor=; Ncor=
a	0	0	2834.0	2613.0	6867.0	184.0	10033.0	116.0	256.0	85.0	68.0	527.0	1678.0	2293.0	0	0
c	0	0	2469.0	3700.0	1188.0	9887.0	60.0	8567.0	9612.0	94.0	109.0	1615.0	2527.0	3004.0	0	0
g	0	0	2664.0	2379.0	1410.0	113.0	84.0	1182.0	294.0	98.0	9972.0	1516.0	3341.0	2183.0	0	0
t	0	0	2324.0	1599.0	826.0	107.0	114.0	426.0	129.0	10014.0	142.0	6633.0	2745.0	2811.0	0	0
MA1655.1_rc_shift4 (ZNF341_rc) 
; positions_8nt_m34 versus MA1655.1_rc (ZNF341_rc); m=10/22; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.577065; ----stgGCTGTTCyc
; cor=; Ncor=
a	0	0	0	0	3536.0	4320.0	2411.0	228.0	229.0	234.0	581.0	241.0	186.0	1442.0	2599.0	4408.0
c	0	0	0	0	5691.0	4672.0	2289.0	270.0	17972.0	468.0	1033.0	576.0	513.0	13739.0	8832.0	5798.0
g	0	0	0	0	5745.0	4431.0	10946.0	18003.0	359.0	399.0	16813.0	211.0	955.0	2043.0	2180.0	4256.0
t	0	0	0	0	3756.0	5305.0	3082.0	227.0	168.0	17627.0	301.0	17700.0	17074.0	1504.0	5117.0	4266.0
MA0499.2_shift2 (MYOD1) 
; positions_8nt_m34 versus MA0499.2 (MYOD1); m=11/22; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.571017; --cwgCACCTGTymy-
; cor=; Ncor=
a	0	0	7175.0	9462.0	4549.0	349.0	32281.0	463.0	534.0	241.0	208.0	402.0	1808.0	9462.0	5687.0	0
c	0	0	11279.0	7103.0	5622.0	33328.0	583.0	25275.0	32504.0	563.0	386.0	2555.0	19052.0	10485.0	11760.0	0
g	0	0	8118.0	8444.0	21884.0	354.0	849.0	7336.0	932.0	366.0	33468.0	1699.0	4440.0	6202.0	7495.0	0
t	0	0	7728.0	9291.0	2245.0	269.0	587.0	1226.0	330.0	33130.0	238.0	29644.0	9000.0	8151.0	9358.0	0
MA0665.1_shift3 (MSC) 
; positions_8nt_m34 versus MA0665.1 (MSC); m=12/22; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.556559; ---AACAGCTGTT---
; cor=; Ncor=
a	0	0	0	69.0	69.0	0.0	69.0	0.0	0.0	0.0	0.0	3.0	0.0	0	0	0
c	0	0	0	0.0	12.0	69.0	0.0	12.0	69.0	0.0	0.0	10.0	9.0	0	0	0
g	0	0	0	18.0	3.0	3.0	0.0	69.0	3.0	0.0	69.0	4.0	4.0	0	0	0
t	0	0	0	7.0	0.0	1.0	0.0	0.0	0.0	69.0	4.0	69.0	69.0	0	0	0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc) 
; positions_8nt_m34 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.549672; ---RACAGCTGTT---
; cor=; Ncor=
a	0	0	0	426.0	944.0	0.0	1368.0	0.0	181.0	76.0	0.0	0.0	0.0	0	0	0
c	0	0	0	0.0	35.0	1368.0	0.0	0.0	1368.0	0.0	0.0	182.0	466.0	0	0	0
g	0	0	0	943.0	296.0	0.0	0.0	1368.0	0.0	0.0	1368.0	179.0	171.0	0	0	0
t	0	0	0	0.0	93.0	0.0	0.0	204.0	0.0	1368.0	0.0	1008.0	1368.0	0	0	0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc) 
; positions_8nt_m34 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=14/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.549101; ---rrCAGCTGbt---
; cor=; Ncor=
a	0	0	0	577.0	1015.0	0.0	1504.0	11.0	467.0	137.0	33.0	81.0	170.0	0	0	0
c	0	0	0	316.0	489.0	1504.0	0.0	72.0	1504.0	33.0	6.0	591.0	357.0	0	0	0
g	0	0	0	410.0	610.0	0.0	4.0	1504.0	30.0	33.0	1504.0	607.0	281.0	0	0	0
t	0	0	0	202.0	54.0	0.0	54.0	445.0	11.0	1504.0	47.0	897.0	697.0	0	0	0
MA0691.1_rc_shift3 (TFAP4_rc) 
; positions_8nt_m34 versus MA0691.1_rc (TFAP4_rc); m=15/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.539291; ---AwCAGCTGwT---
; cor=; Ncor=
a	0	0	0	3423.0	1613.0	0.0	3423.0	6.0	14.0	0.0	0.0	1264.0	228.0	0	0	0
c	0	0	0	433.0	333.0	3423.0	0.0	49.0	3423.0	0.0	0.0	62.0	337.0	0	0	0
g	0	0	0	682.0	114.0	1.0	1.0	3423.0	85.0	2.0	3423.0	546.0	500.0	0	0	0
t	0	0	0	299.0	1810.0	0.0	1.0	21.0	2.0	3423.0	0.0	2159.0	3423.0	0	0	0
MA0667.1_rc_shift3 (MYF6_rc) 
; positions_8nt_m34 versus MA0667.1_rc (MYF6_rc); m=16/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.539019; ---RACAGyTGTT---
; cor=; Ncor=
a	0	0	0	444.0	444.0	0.0	444.0	56.0	12.0	0.0	0.0	1.0	7.0	0	0	0
c	0	0	0	7.0	0.0	444.0	0.0	35.0	256.0	7.0	0.0	24.0	70.0	0	0	0
g	0	0	0	159.0	22.0	2.0	0.0	353.0	30.0	3.0	444.0	18.0	12.0	0	0	0
t	0	0	0	0.0	2.0	0.0	11.0	12.0	159.0	444.0	0.0	444.0	444.0	0	0	0
MA0091.1_rc_shift3 (TAL1::TCF3_rc) 
; positions_8nt_m34 versus MA0091.1_rc (TAL1::TCF3_rc); m=17/22; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.53648; ---AmCAKMTGkTck-
; cor=; Ncor=
a	0	0	0	34.0	21.0	1.0	44.0	0.0	32.0	0.0	0.0	0.0	2.0	5.0	9.0	0
c	0	0	0	2.0	20.0	43.0	0.0	0.0	11.0	0.0	1.0	0.0	3.0	20.0	8.0	0
g	0	0	0	4.0	3.0	0.0	0.0	32.0	1.0	0.0	43.0	24.0	0.0	10.0	14.0	0
t	0	0	0	4.0	0.0	0.0	0.0	12.0	0.0	44.0	0.0	20.0	39.0	9.0	13.0	0
MA1635.1_rc_shift3 (BHLHE22(var.2)_rc) 
; positions_8nt_m34 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=18/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.517272; ---csCAGCTGsg---
; cor=; Ncor=
a	0	0	0	3886.0	4449.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4402.0	0	0	0
c	0	0	0	5625.0	5112.0	18327.0	37.0	53.0	18288.0	52.0	11.0	7267.0	4447.0	0	0	0
g	0	0	0	4447.0	7269.0	15.0	52.0	18288.0	53.0	37.0	18331.0	5110.0	5621.0	0	0	0
t	0	0	0	4398.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4453.0	3886.0	0	0	0
MA0816.1_rc_shift3 (Ascl2_rc) 
; positions_8nt_m34 versus MA0816.1_rc (Ascl2_rc); m=19/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.512948; ---rrCAGCTGyt---
; cor=; Ncor=
a	0	0	0	199.0	94.0	2.0	300.0	1.0	18.0	15.0	1.0	1.0	16.0	0	0	0
c	0	0	0	28.0	15.0	300.0	0.0	2.0	300.0	0.0	0.0	172.0	63.0	0	0	0
g	0	0	0	101.0	206.0	1.0	0.0	300.0	23.0	0.0	300.0	41.0	36.0	0	0	0
t	0	0	0	34.0	6.0	0.0	4.0	3.0	7.0	300.0	3.0	128.0	237.0	0	0	0
MA0048.2_shift3 (NHLH1) 
; positions_8nt_m34 versus MA0048.2 (NHLH1); m=20/22; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.495388; ---cGCAGCTGCk---
; cor=; Ncor=
a	0	0	0	788.0	461.0	3.0	2166.0	0.0	96.0	0.0	2.0	296.0	308.0	0	0	0
c	0	0	0	2166.0	179.0	2166.0	3.0	301.0	2166.0	4.0	4.0	2166.0	736.0	0	0	0
g	0	0	0	181.0	2166.0	0.0	1.0	2166.0	124.0	4.0	2166.0	102.0	2166.0	0	0	0
t	0	0	0	111.0	142.0	0.0	0.0	114.0	0.0	2166.0	1.0	350.0	1489.0	0	0	0
MA1100.2_rc_shift3 (ASCL1_rc) 
; positions_8nt_m34 versus MA1100.2_rc (ASCL1_rc); m=21/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.48542; ---rgCAGCTGyy---
; cor=; Ncor=
a	0	0	0	1194.0	1349.0	29.0	4413.0	20.0	625.0	218.0	14.0	354.0	726.0	0	0	0
c	0	0	0	889.0	814.0	4413.0	121.0	1320.0	4413.0	60.0	0.0	3079.0	1495.0	0	0	0
g	0	0	0	1487.0	3065.0	0.0	24.0	4413.0	1288.0	157.0	4413.0	521.0	926.0	0	0	0
t	0	0	0	843.0	177.0	52.0	118.0	729.0	107.0	4413.0	0.0	1334.0	1267.0	0	0	0
MA0820.1_rc_shift3 (FIGLA_rc) 
; positions_8nt_m34 versus MA0820.1_rc (FIGLA_rc); m=22/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.475899; ---wmCAGGTGkw---
; cor=; Ncor=
a	0	0	0	753.0	832.0	65.0	1780.0	0.0	0.0	14.0	29.0	237.0	449.0	0	0	0
c	0	0	0	289.0	569.0	1780.0	17.0	311.0	527.0	0.0	0.0	160.0	175.0	0	0	0
g	0	0	0	283.0	225.0	33.0	0.0	1780.0	1780.0	46.0	1780.0	693.0	270.0	0	0	0
t	0	0	0	455.0	154.0	36.0	56.0	9.0	0.0	1780.0	0.0	690.0	886.0	0	0	0