Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m35/peak-motifs_positions_8nt_m35_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m35/peak-motifs_positions_8nt_m35.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m35/peak-motifs_positions_8nt_m35_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m35/peak-motifs_positions_8nt_m35.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m35/peak-motifs_positions_8nt_m35_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m35/peak-motifs_positions_8nt_m35_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m35/peak-motifs_positions_8nt_m35_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m35/peak-motifs_positions_8nt_m35_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m35/peak-motifs_positions_8nt_m35_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m35/peak-motifs_positions_8nt_m35_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m35/peak-motifs_positions_8nt_m35.tf
		file1	1	13	5140
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_8nt_m35 MA0499.2 positions_8nt_m35positions_8nt_m35 MYOD1 0.872 0.872 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_8nt_m35 MA1620.1 positions_8nt_m35positions_8nt_m35 Ptf1a(var.3) 0.941 0.869 13 12 12 13 0.9231 0.9231 1.0000 D 0
positions_8nt_m35 MA0745.2 positions_8nt_m35positions_8nt_m35 SNAI2 0.867 0.867 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_8nt_m35 MA1621.1 positions_8nt_m35positions_8nt_m35 Rbpjl 0.924 0.858 13 14 13 14 0.9286 1.0000 0.9286 D -1
positions_8nt_m35 MA0832.1 positions_8nt_m35positions_8nt_m35 Tcf21 0.866 0.804 13 14 13 14 0.9286 1.0000 0.9286 R -1
positions_8nt_m35 MA1641.1 positions_8nt_m35positions_8nt_m35 MYF5 0.862 0.796 13 12 12 13 0.9231 0.9231 1.0000 R 0
positions_8nt_m35 MA1619.1 positions_8nt_m35positions_8nt_m35 Ptf1a(var.2) 0.853 0.787 13 12 12 13 0.9231 0.9231 1.0000 D 0
positions_8nt_m35 MA0830.2 positions_8nt_m35positions_8nt_m35 TCF4 0.763 0.763 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_8nt_m35 MA1631.1 positions_8nt_m35positions_8nt_m35 ASCL1(var.2) 0.754 0.754 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_8nt_m35 MA1618.1 positions_8nt_m35positions_8nt_m35 Ptf1a 0.736 0.736 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_8nt_m35 MA1485.1 positions_8nt_m35positions_8nt_m35 FERD3L 0.779 0.723 13 14 13 14 0.9286 1.0000 0.9286 D -1
positions_8nt_m35 MA1105.2 positions_8nt_m35positions_8nt_m35 GRHL2 0.783 0.723 13 12 12 13 0.9231 0.9231 1.0000 R 1
positions_8nt_m35 MA0500.2 positions_8nt_m35positions_8nt_m35 MYOG 0.780 0.720 13 12 12 13 0.9231 0.9231 1.0000 D 0
positions_8nt_m35 MA1642.1 positions_8nt_m35positions_8nt_m35 NEUROG2(var.2) 0.719 0.719 13 13 13 13 1.0000 1.0000 1.0000 R 0
positions_8nt_m35 MA0521.1 positions_8nt_m35positions_8nt_m35 Tcf12 0.846 0.716 13 11 11 13 0.8462 0.8462 1.0000 R 0
positions_8nt_m35 MA1123.2 positions_8nt_m35positions_8nt_m35 TWIST1 0.705 0.705 13 13 13 13 1.0000 1.0000 1.0000 R 0
positions_8nt_m35 MA0744.2 positions_8nt_m35positions_8nt_m35 SCRT2 0.862 0.700 13 16 13 16 0.8125 1.0000 0.8125 R 0
positions_8nt_m35 MA0665.1 positions_8nt_m35positions_8nt_m35 MSC 0.906 0.697 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_8nt_m35 MA0820.1 positions_8nt_m35positions_8nt_m35 FIGLA 0.906 0.697 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_8nt_m35 MA0743.2 positions_8nt_m35positions_8nt_m35 SCRT1 0.857 0.696 13 16 13 16 0.8125 1.0000 0.8125 R 0
positions_8nt_m35 MA0667.1 positions_8nt_m35positions_8nt_m35 MYF6 0.892 0.686 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_8nt_m35 MA0103.3 positions_8nt_m35positions_8nt_m35 ZEB1 0.802 0.679 13 11 11 13 0.8462 0.8462 1.0000 D 1
positions_8nt_m35 MA1467.1 positions_8nt_m35positions_8nt_m35 ATOH1(var.2) 0.878 0.675 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_8nt_m35 MA1559.1 positions_8nt_m35positions_8nt_m35 SNAI3 0.877 0.675 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_8nt_m35 MA0783.1 positions_8nt_m35positions_8nt_m35 PKNOX2 0.730 0.674 13 12 12 13 0.9231 0.9231 1.0000 R 0
positions_8nt_m35 MA0091.1 positions_8nt_m35positions_8nt_m35 TAL1::TCF3 0.717 0.661 13 12 12 13 0.9231 0.9231 1.0000 R 1
positions_8nt_m35 MA1472.1 positions_8nt_m35positions_8nt_m35 BHLHA15(var.2) 0.846 0.651 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_8nt_m35 MA0797.1 positions_8nt_m35positions_8nt_m35 TGIF2 0.701 0.647 13 12 12 13 0.9231 0.9231 1.0000 R 0
positions_8nt_m35 MA1558.1 positions_8nt_m35positions_8nt_m35 SNAI1 0.839 0.645 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_8nt_m35 MA0691.1 positions_8nt_m35positions_8nt_m35 TFAP4 0.829 0.637 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_8nt_m35 MA1648.1 positions_8nt_m35positions_8nt_m35 TCF12(var.2) 0.753 0.637 13 11 11 13 0.8462 0.8462 1.0000 D 1
positions_8nt_m35 MA0522.3 positions_8nt_m35positions_8nt_m35 TCF3 0.745 0.631 13 11 11 13 0.8462 0.8462 1.0000 D 1
positions_8nt_m35 MA1109.1 positions_8nt_m35positions_8nt_m35 NEUROD1 0.717 0.614 13 13 12 14 0.8571 0.9231 0.9231 R -1
positions_8nt_m35 MA0816.1 positions_8nt_m35positions_8nt_m35 Ascl2 0.792 0.609 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_8nt_m35 MA0819.1 positions_8nt_m35positions_8nt_m35 CLOCK 0.779 0.599 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_8nt_m35 MA1100.2 positions_8nt_m35positions_8nt_m35 ASCL1 0.772 0.594 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_8nt_m35 MA1570.1 positions_8nt_m35positions_8nt_m35 TFAP4(var.2) 0.772 0.594 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_8nt_m35 MA1635.1 positions_8nt_m35positions_8nt_m35 BHLHE22(var.2) 0.743 0.572 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_8nt_m35 MA1638.1 positions_8nt_m35positions_8nt_m35 HAND2 0.722 0.556 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_8nt_m35 MA0807.1 positions_8nt_m35positions_8nt_m35 TBX5 0.894 0.550 13 8 8 13 0.6154 0.6154 1.0000 R 0
positions_8nt_m35 MA0806.1 positions_8nt_m35positions_8nt_m35 TBX4 0.883 0.543 13 8 8 13 0.6154 0.6154 1.0000 R 0
positions_8nt_m35 MA0100.3 positions_8nt_m35positions_8nt_m35 MYB 0.700 0.539 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_8nt_m35 MA0803.1 positions_8nt_m35positions_8nt_m35 TBX15 0.865 0.532 13 8 8 13 0.6154 0.6154 1.0000 R 0
positions_8nt_m35 MA0805.1 positions_8nt_m35positions_8nt_m35 TBX1 0.845 0.520 13 8 8 13 0.6154 0.6154 1.0000 R 0
positions_8nt_m35 MA0801.1 positions_8nt_m35positions_8nt_m35 MGA 0.826 0.508 13 8 8 13 0.6154 0.6154 1.0000 R 0
positions_8nt_m35 MA1567.1 positions_8nt_m35positions_8nt_m35 TBX6 0.758 0.487 13 10 9 14 0.6429 0.6923 0.9000 R -1
positions_8nt_m35 MA1566.1 positions_8nt_m35positions_8nt_m35 TBX3 0.746 0.480 13 10 9 14 0.6429 0.6923 0.9000 R -1
positions_8nt_m35 MA0690.1 positions_8nt_m35positions_8nt_m35 TBX21 0.714 0.459 13 10 9 14 0.6429 0.6923 0.9000 R -1
positions_8nt_m35 MA0802.1 positions_8nt_m35positions_8nt_m35 TBR1 0.844 0.450 13 10 8 15 0.5333 0.6154 0.8000 R -2
positions_8nt_m35 MA0688.1 positions_8nt_m35positions_8nt_m35 TBX2 0.741 0.444 13 11 9 15 0.6000 0.6923 0.8182 R -2
positions_8nt_m35 MA1647.1 positions_8nt_m35positions_8nt_m35 PRDM4 0.721 0.433 13 11 9 15 0.6000 0.6923 0.8182 D 4
positions_8nt_m35 MA0480.1 positions_8nt_m35positions_8nt_m35 Foxo1 0.719 0.432 13 11 9 15 0.6000 0.6923 0.8182 D 4
positions_8nt_m35 MA0689.1 positions_8nt_m35positions_8nt_m35 TBX20 0.717 0.430 13 11 9 15 0.6000 0.6923 0.8182 R -2 
 Host name	pedagogix
 Job started	2020-04-14.171042
 Job done	2020-04-14.171154
 Seconds	10.66
	user	10.66
	system	1.25
	cuser	56.17
;	csystem	3.26