One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m4/peak-motifs_positions_8nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m4/peak-motifs_positions_8nt_m4_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m4_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m4_shift0 (positions_8nt_m4positions_8nt_m4)
; positions_8nt_m4 (positions_8nt_m4positions_8nt_m4); m=0 (reference); ncol1=22; shift=0; ncol=22; mskGCCAGCTGCAGCTGTTCct ; Alignment reference a 24 13 18 2 10 3 86 3 5 6 2 0 88 0 1 3 0 1 2 4 15 15 c 31 36 16 11 65 84 1 6 83 4 5 91 0 2 90 0 6 7 6 68 39 22 g 15 31 33 74 12 1 1 81 4 4 85 2 0 91 1 3 87 6 7 14 21 17 t 23 13 26 6 6 5 5 3 1 79 1 0 5 0 1 87 0 79 78 7 18 39

MA1485.1_shift7 (FERD3L)
; positions_8nt_m4 versus MA1485.1 (FERD3L); m=1/8; ncol2=14; w=14; offset=7; strand=D; shift=7; score=0.462101; -------GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0832.1_rc_shift7 (Tcf21_rc)
; positions_8nt_m4 versus MA0832.1_rc (Tcf21_rc); m=2/8; ncol2=14; w=14; offset=7; strand=R; shift=7; score=0.450801; -------ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 0 0 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 0 0 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 0 0 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 0 0 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0499.2_shift8 (MYOD1)
; positions_8nt_m4 versus MA0499.2 (MYOD1); m=3/8; ncol2=13; w=13; offset=8; strand=D; shift=8; score=0.449626; --------cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0521.1_rc_shift8 (Tcf12_rc)
; positions_8nt_m4 versus MA0521.1_rc (Tcf12_rc); m=4/8; ncol2=11; w=11; offset=8; strand=R; shift=8; score=0.440728; --------cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA0500.2_shift8 (MYOG)
; positions_8nt_m4 versus MA0500.2 (MYOG); m=5/8; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.440414; --------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA1655.1_rc_shift10 (ZNF341_rc)
; positions_8nt_m4 versus MA1655.1_rc (ZNF341_rc); m=6/8; ncol2=12; w=12; offset=10; strand=R; shift=10; score=0.42623; ----------stgGCTGTTCyc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 3536.0 4320.0 2411.0 228.0 229.0 234.0 581.0 241.0 186.0 1442.0 2599.0 4408.0 c 0 0 0 0 0 0 0 0 0 0 5691.0 4672.0 2289.0 270.0 17972.0 468.0 1033.0 576.0 513.0 13739.0 8832.0 5798.0 g 0 0 0 0 0 0 0 0 0 0 5745.0 4431.0 10946.0 18003.0 359.0 399.0 16813.0 211.0 955.0 2043.0 2180.0 4256.0 t 0 0 0 0 0 0 0 0 0 0 3756.0 5305.0 3082.0 227.0 168.0 17627.0 301.0 17700.0 17074.0 1504.0 5117.0 4266.0

MA1619.1_rc_shift8 (Ptf1a(var.2)_rc)
; positions_8nt_m4 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/8; ncol2=12; w=12; offset=8; strand=R; shift=8; score=0.416228; --------rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1641.1_rc_shift8 (MYF5_rc)
; positions_8nt_m4 versus MA1641.1_rc (MYF5_rc); m=8/8; ncol2=12; w=12; offset=8; strand=R; shift=8; score=0.414833; --------gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_8nt_m4_shift0 (positions_8nt_m4positions_8nt_m4)				; positions_8nt_m4 (positions_8nt_m4positions_8nt_m4); m=0 (reference); ncol1=22; shift=0; ncol=22; mskGCCAGCTGCAGCTGTTCct ; Alignment reference a 24 13 18 2 10 3 86 3 5 6 2 0 88 0 1 3 0 1 2 4 15 15 c 31 36 16 11 65 84 1 6 83 4 5 91 0 2 90 0 6 7 6 68 39 22 g 15 31 33 74 12 1 1 81 4 4 85 2 0 91 1 3 87 6 7 14 21 17 t 23 13 26 6 6 5 5 3 1 79 1 0 5 0 1 87 0 79 78 7 18 39
MA1485.1_shift7 (FERD3L)				; positions_8nt_m4 versus MA1485.1 (FERD3L); m=1/8; ncol2=14; w=14; offset=7; strand=D; shift=7; score=0.462101; -------GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0
MA0832.1_rc_shift7 (Tcf21_rc)				; positions_8nt_m4 versus MA0832.1_rc (Tcf21_rc); m=2/8; ncol2=14; w=14; offset=7; strand=R; shift=7; score=0.450801; -------ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 0 0 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 0 0 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 0 0 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 0 0 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0
MA0499.2_shift8 (MYOD1)				; positions_8nt_m4 versus MA0499.2 (MYOD1); m=3/8; ncol2=13; w=13; offset=8; strand=D; shift=8; score=0.449626; --------cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0
MA0521.1_rc_shift8 (Tcf12_rc)				; positions_8nt_m4 versus MA0521.1_rc (Tcf12_rc); m=4/8; ncol2=11; w=11; offset=8; strand=R; shift=8; score=0.440728; --------cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0
MA0500.2_shift8 (MYOG)				; positions_8nt_m4 versus MA0500.2 (MYOG); m=5/8; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.440414; --------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0
MA1655.1_rc_shift10 (ZNF341_rc)				; positions_8nt_m4 versus MA1655.1_rc (ZNF341_rc); m=6/8; ncol2=12; w=12; offset=10; strand=R; shift=10; score=0.42623; ----------stgGCTGTTCyc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 3536.0 4320.0 2411.0 228.0 229.0 234.0 581.0 241.0 186.0 1442.0 2599.0 4408.0 c 0 0 0 0 0 0 0 0 0 0 5691.0 4672.0 2289.0 270.0 17972.0 468.0 1033.0 576.0 513.0 13739.0 8832.0 5798.0 g 0 0 0 0 0 0 0 0 0 0 5745.0 4431.0 10946.0 18003.0 359.0 399.0 16813.0 211.0 955.0 2043.0 2180.0 4256.0 t 0 0 0 0 0 0 0 0 0 0 3756.0 5305.0 3082.0 227.0 168.0 17627.0 301.0 17700.0 17074.0 1504.0 5117.0 4266.0
MA1619.1_rc_shift8 (Ptf1a(var.2)_rc)				; positions_8nt_m4 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/8; ncol2=12; w=12; offset=8; strand=R; shift=8; score=0.416228; --------rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0
MA1641.1_rc_shift8 (MYF5_rc)				; positions_8nt_m4 versus MA1641.1_rc (MYF5_rc); m=8/8; ncol2=12; w=12; offset=8; strand=R; shift=8; score=0.414833; --------gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0