One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m6_shift0 ; 22 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_8nt_m6_shift0 (positions_8nt_m6positions_8nt_m6)     
; positions_8nt_m6 (positions_8nt_m6positions_8nt_m6); m=0 (reference); ncol1=17; shift=0; ncol=17; srgGGACAGCTGGCass
; Alignment reference
a	323	400	378	95	75	1427	13	1489	14	37	21	6	54	80	607	321	257
c	478	358	151	31	36	32	1469	12	12	1420	70	7	90	1205	378	416	496
g	400	526	742	1306	1396	53	26	13	1477	54	19	1505	1272	165	245	481	435
t	323	240	253	92	17	12	16	10	21	13	1414	6	108	74	294	306	336
MA1109.1_shift3 (NEUROD1) 
; positions_8nt_m6 versus MA1109.1 (NEUROD1); m=1/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.590799; ---graCAGATGGyrs-
; cor=; Ncor=
a	0	0	0	561.0	755.0	1289.0	17.0	2241.0	16.0	2034.0	55.0	13.0	59.0	373.0	692.0	538.0	0
c	0	0	0	429.0	323.0	452.0	2240.0	7.0	24.0	150.0	51.0	7.0	93.0	911.0	540.0	591.0	0
g	0	0	0	726.0	906.0	494.0	13.0	16.0	2152.0	77.0	19.0	2231.0	1962.0	418.0	599.0	628.0	0
t	0	0	0	566.0	298.0	47.0	12.0	18.0	90.0	21.0	2157.0	31.0	168.0	580.0	451.0	525.0	0
MA0499.2_rc_shift2 (MYOD1_rc) 
; positions_8nt_m6 versus MA0499.2_rc (MYOD1_rc); m=2/21; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.578732; --rkrACAGGTGcwg--
; cor=; Ncor=
a	0	0	9358.0	8151.0	9000.0	29644.0	238.0	33130.0	330.0	1226.0	587.0	269.0	2245.0	9291.0	7728.0	0	0
c	0	0	7495.0	6202.0	4440.0	1699.0	33468.0	366.0	932.0	7336.0	849.0	354.0	21884.0	8444.0	8118.0	0	0
g	0	0	11760.0	10485.0	19052.0	2555.0	386.0	563.0	32504.0	25275.0	583.0	33328.0	5622.0	7103.0	11279.0	0	0
t	0	0	5687.0	9462.0	1808.0	402.0	208.0	241.0	534.0	463.0	32281.0	349.0	4549.0	9462.0	7175.0	0	0
MA1485.1_rc_shift2 (FERD3L_rc) 
; positions_8nt_m6 versus MA1485.1_rc (FERD3L_rc); m=3/21; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.576715; --GTrACAGCTGkyrC-
; cor=; Ncor=
a	0	0	48.0	958.0	14919.0	21065.0	0.0	29605.0	0.0	4691.0	144.0	0.0	1710.0	74.0	9557.0	225.0	0
c	0	0	0.0	9815.0	5920.0	3395.0	29605.0	210.0	471.0	29605.0	118.0	0.0	3142.0	12703.0	348.0	29605.0	0
g	0	0	29605.0	809.0	8664.0	3878.0	0.0	129.0	29605.0	841.0	126.0	29605.0	9363.0	2443.0	20049.0	68.0	0
t	0	0	0.0	29605.0	103.0	1268.0	0.0	81.0	3649.0	0.0	29605.0	36.0	15390.0	14384.0	450.0	2158.0	0
MA1641.1_shift3 (MYF5) 
; positions_8nt_m6 versus MA1641.1 (MYF5); m=4/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.566906; ---gvaCAGCTGtbc--
; cor=; Ncor=
a	0	0	0	2698.0	3507.0	7490.0	95.0	10965.0	100.0	223.0	129.0	42.0	578.0	1572.0	2554.0	0	0
c	0	0	0	2700.0	2986.0	1368.0	10911.0	47.0	230.0	10657.0	68.0	161.0	1775.0	3146.0	3258.0	0	0
g	0	0	0	3258.0	3145.0	1774.0	161.0	69.0	10658.0	230.0	47.0	10912.0	1368.0	2985.0	2701.0	0	0
t	0	0	0	2554.0	1572.0	578.0	43.0	129.0	222.0	100.0	10966.0	95.0	7489.0	3507.0	2697.0	0	0
MA1619.1_rc_shift3 (Ptf1a(var.2)_rc) 
; positions_8nt_m6 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.556328; ---rmaCAGCTGtky--
; cor=; Ncor=
a	0	0	0	1871.0	1974.0	4341.0	49.0	7121.0	33.0	223.0	28.0	27.0	529.0	1216.0	1607.0	0	0
c	0	0	0	1803.0	2426.0	1065.0	7150.0	40.0	299.0	6689.0	65.0	28.0	1308.0	1629.0	1974.0	0	0
g	0	0	0	1977.0	1632.0	1312.0	27.0	66.0	6697.0	307.0	41.0	7149.0	1070.0	2430.0	1803.0	0	0
t	0	0	0	1602.0	1221.0	535.0	27.0	26.0	224.0	34.0	7119.0	49.0	4346.0	1978.0	1869.0	0	0
MA0521.1_shift4 (Tcf12) 
; positions_8nt_m6 versus MA0521.1 (Tcf12); m=6/21; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.553529; ----rRCAGCTGswg--
; cor=; Ncor=
a	0	0	0	0	6170.0	8820.0	0.0	12895.0	8.0	184.0	0.0	0.0	1875.0	3912.0	2863.0	0	0
c	0	0	0	0	1585.0	124.0	12895.0	0.0	0.0	10822.0	0.0	0.0	5527.0	2416.0	3005.0	0	0
g	0	0	0	0	5123.0	3951.0	0.0	0.0	12887.0	1889.0	0.0	12895.0	3811.0	2925.0	4836.0	0	0
t	0	0	0	0	17.0	0.0	0.0	0.0	0.0	0.0	12895.0	0.0	1682.0	3642.0	2191.0	0	0
MA1642.1_shift2 (NEUROG2(var.2)) 
; positions_8nt_m6 versus MA1642.1 (NEUROG2(var.2)); m=7/21; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.548974; --rrraCAGATGGyv--
; cor=; Ncor=
a	0	0	8690.0	9047.0	12089.0	16448.0	278.0	33720.0	400.0	32746.0	649.0	280.0	1523.0	6665.0	9464.0	0	0
c	0	0	7353.0	6843.0	6467.0	8154.0	33559.0	211.0	793.0	952.0	904.0	205.0	2966.0	10441.0	9034.0	0	0
g	0	0	10813.0	10123.0	11114.0	8039.0	317.0	301.0	30392.0	418.0	323.0	33422.0	24998.0	7581.0	8709.0	0	0
t	0	0	7535.0	8378.0	4721.0	1750.0	237.0	159.0	2806.0	275.0	32515.0	484.0	4904.0	9704.0	7184.0	0	0
MA1123.2_rc_shift3 (TWIST1_rc) 
; positions_8nt_m6 versus MA1123.2_rc (TWIST1_rc); m=8/21; ncol2=13; w=13; offset=3; strand=R; shift=3; score=0.547123; ---avaCATCTGGwwt-
; cor=; Ncor=
a	0	0	0	7736.0	8588.0	18544.0	582.0	26232.0	214.0	1407.0	274.0	174.0	852.0	9428.0	8259.0	6758.0	0
c	0	0	0	6213.0	7273.0	4069.0	25975.0	288.0	908.0	24166.0	210.0	117.0	2336.0	5772.0	5722.0	6485.0	0
g	0	0	0	6561.0	7402.0	2919.0	396.0	456.0	1687.0	1320.0	136.0	26665.0	20412.0	4597.0	5530.0	5761.0	0
t	0	0	0	6823.0	4070.0	1801.0	380.0	357.0	24524.0	440.0	26713.0	377.0	3733.0	7536.0	7822.0	8329.0	0
MA1571.1_shift3 (TGIF2LX) 
; positions_8nt_m6 versus MA1571.1 (TGIF2LX); m=9/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.53289; ---TGACAgcTGTCA--
; cor=; Ncor=
a	0	0	0	237.0	52.0	2539.0	32.0	2539.0	37.0	380.0	37.0	64.0	428.0	45.0	2539.0	0	0
c	0	0	0	355.0	187.0	64.0	2539.0	18.0	575.0	1568.0	318.0	23.0	127.0	2539.0	132.0	0	0
g	0	0	0	145.0	2539.0	132.0	29.0	316.0	1566.0	554.0	23.0	2539.0	72.0	172.0	361.0	0	0
t	0	0	0	2539.0	47.0	428.0	59.0	40.0	362.0	38.0	2539.0	22.0	2539.0	66.0	232.0	0	0
MA0796.1_shift3 (TGIF1) 
; positions_8nt_m6 versus MA0796.1 (TGIF1); m=10/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.532868; ---TGACAGCTGTCA--
; cor=; Ncor=
a	0	0	0	39.0	9.0	8828.0	1.0	8861.0	14.0	452.0	1.0	11.0	45.0	36.0	9034.0	0	0
c	0	0	0	19.0	8.0	3.0	13304.0	5.0	20.0	10562.0	62.0	13.0	24.0	13485.0	17.0	0	0
g	0	0	0	1.0	13499.0	20.0	5.0	22.0	12673.0	2520.0	8.0	13261.0	3.0	13.0	32.0	0	0
t	0	0	0	13221.0	4.0	0.0	7.0	4.0	963.0	12.0	12775.0	9.0	12656.0	17.0	33.0	0	0
MA0500.2_rc_shift3 (MYOG_rc) 
; positions_8nt_m6 versus MA0500.2_rc (MYOG_rc); m=11/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.52919; ---sarCAGCTGyts--
; cor=; Ncor=
a	0	0	0	5310.0	8475.0	7192.0	88.0	21777.0	95.0	169.0	163.0	182.0	1678.0	4692.0	5070.0	0	0
c	0	0	0	6369.0	3718.0	2706.0	21985.0	179.0	131.0	21963.0	236.0	101.0	10790.0	5483.0	5596.0	0	0
g	0	0	0	5660.0	5497.0	10792.0	102.0	238.0	21964.0	130.0	176.0	21988.0	2730.0	3754.0	6381.0	0	0
t	0	0	0	5018.0	4667.0	1667.0	182.0	163.0	167.0	95.0	21782.0	86.0	7159.0	8428.0	5310.0	0	0
MA1572.1_rc_shift3 (TGIF2LY_rc) 
; positions_8nt_m6 versus MA1572.1_rc (TGIF2LY_rc); m=12/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.526517; ---TGACAgcTGTCA--
; cor=; Ncor=
a	0	0	0	679.0	172.0	5209.0	121.0	5209.0	138.0	1018.0	110.0	144.0	1197.0	104.0	5209.0	0	0
c	0	0	0	807.0	259.0	145.0	5209.0	73.0	1188.0	2794.0	833.0	66.0	349.0	5209.0	415.0	0	0
g	0	0	0	362.0	5209.0	371.0	61.0	848.0	2850.0	1267.0	37.0	5209.0	163.0	270.0	836.0	0	0
t	0	0	0	5209.0	135.0	1084.0	175.0	140.0	1033.0	130.0	5209.0	123.0	5209.0	162.0	736.0	0	0
MA0797.1_shift3 (TGIF2) 
; positions_8nt_m6 versus MA0797.1 (TGIF2); m=13/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.525216; ---TGACAGsTGTCA--
; cor=; Ncor=
a	0	0	0	477.0	97.0	11801.0	127.0	11801.0	324.0	1501.0	71.0	150.0	601.0	70.0	11801.0	0	0
c	0	0	0	421.0	48.0	34.0	11801.0	25.0	262.0	7459.0	410.0	77.0	621.0	11801.0	172.0	0	0
g	0	0	0	153.0	11801.0	396.0	51.0	270.0	11801.0	4341.0	57.0	11801.0	123.0	136.0	395.0	0	0
t	0	0	0	11801.0	52.0	155.0	156.0	41.0	2690.0	91.0	11801.0	83.0	11801.0	113.0	420.0	0	0
MA0783.1_shift3 (PKNOX2) 
; positions_8nt_m6 versus MA0783.1 (PKNOX2); m=14/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.498311; ---TGACAGsTGTCA--
; cor=; Ncor=
a	0	0	0	37.0	1.0	1124.0	0.0	1169.0	7.0	39.0	0.0	3.0	10.0	11.0	1190.0	0	0
c	0	0	0	0.0	6.0	3.0	1250.0	0.0	0.0	304.0	4.0	1.0	29.0	1265.0	1.0	0	0
g	0	0	0	9.0	1389.0	13.0	0.0	1.0	1298.0	702.0	0.0	1370.0	5.0	6.0	21.0	0	0
t	0	0	0	1192.0	0.0	6.0	9.0	4.0	118.0	0.0	1204.0	0.0	1167.0	3.0	9.0	0	0
MA1467.1_rc_shift4 (ATOH1(var.2)_rc) 
; positions_8nt_m6 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.489602; ----RACAGCTGTT---
; cor=; Ncor=
a	0	0	0	0	426.0	944.0	0.0	1368.0	0.0	181.0	76.0	0.0	0.0	0.0	0	0	0
c	0	0	0	0	0.0	35.0	1368.0	0.0	0.0	1368.0	0.0	0.0	182.0	466.0	0	0	0
g	0	0	0	0	943.0	296.0	0.0	0.0	1368.0	0.0	0.0	1368.0	179.0	171.0	0	0	0
t	0	0	0	0	0.0	93.0	0.0	0.0	204.0	0.0	1368.0	0.0	1008.0	1368.0	0	0	0
MA1472.1_rc_shift4 (BHLHA15(var.2)_rc) 
; positions_8nt_m6 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=16/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.480701; ----rrCAGCTGbt---
; cor=; Ncor=
a	0	0	0	0	577.0	1015.0	0.0	1504.0	11.0	467.0	137.0	33.0	81.0	170.0	0	0	0
c	0	0	0	0	316.0	489.0	1504.0	0.0	72.0	1504.0	33.0	6.0	591.0	357.0	0	0	0
g	0	0	0	0	410.0	610.0	0.0	4.0	1504.0	30.0	33.0	1504.0	607.0	281.0	0	0	0
t	0	0	0	0	202.0	54.0	0.0	54.0	445.0	11.0	1504.0	47.0	897.0	697.0	0	0	0
MA1635.1_shift4 (BHLHE22(var.2)) 
; positions_8nt_m6 versus MA1635.1 (BHLHE22(var.2)); m=17/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.473631; ----csCAGCTGsg---
; cor=; Ncor=
a	0	0	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0	0	0
c	0	0	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0	0	0
g	0	0	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0	0	0
t	0	0	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0	0	0
MA1100.2_shift4 (ASCL1) 
; positions_8nt_m6 versus MA1100.2 (ASCL1); m=18/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.451951; ----rrCAGCTGcy---
; cor=; Ncor=
a	0	0	0	0	1267.0	1334.0	0.0	4413.0	107.0	729.0	118.0	52.0	177.0	843.0	0	0	0
c	0	0	0	0	926.0	521.0	4413.0	157.0	1288.0	4413.0	24.0	0.0	3065.0	1487.0	0	0	0
g	0	0	0	0	1495.0	3079.0	0.0	60.0	4413.0	1320.0	121.0	4413.0	814.0	889.0	0	0	0
t	0	0	0	0	726.0	354.0	14.0	218.0	625.0	20.0	4413.0	29.0	1349.0	1194.0	0	0	0
MA0816.1_rc_shift4 (Ascl2_rc) 
; positions_8nt_m6 versus MA0816.1_rc (Ascl2_rc); m=19/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.42845; ----rrCAGCTGyt---
; cor=; Ncor=
a	0	0	0	0	199.0	94.0	2.0	300.0	1.0	18.0	15.0	1.0	1.0	16.0	0	0	0
c	0	0	0	0	28.0	15.0	300.0	0.0	2.0	300.0	0.0	0.0	172.0	63.0	0	0	0
g	0	0	0	0	101.0	206.0	1.0	0.0	300.0	23.0	0.0	300.0	41.0	36.0	0	0	0
t	0	0	0	0	34.0	6.0	0.0	4.0	3.0	7.0	300.0	3.0	128.0	237.0	0	0	0
MA0665.1_rc_shift4 (MSC_rc) 
; positions_8nt_m6 versus MA0665.1_rc (MSC_rc); m=20/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.426751; ----AACAGCTGTT---
; cor=; Ncor=
a	0	0	0	0	69.0	69.0	4.0	69.0	0.0	0.0	0.0	1.0	0.0	7.0	0	0	0
c	0	0	0	0	4.0	4.0	69.0	0.0	3.0	69.0	0.0	3.0	3.0	18.0	0	0	0
g	0	0	0	0	9.0	10.0	0.0	0.0	69.0	12.0	0.0	69.0	12.0	0.0	0	0	0
t	0	0	0	0	0.0	3.0	0.0	0.0	0.0	0.0	69.0	0.0	69.0	69.0	0	0	0
MA0691.1_shift4 (TFAP4) 
; positions_8nt_m6 versus MA0691.1 (TFAP4); m=21/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.423016; ----AwCAGCTGwT---
; cor=; Ncor=
a	0	0	0	0	3423.0	2159.0	0.0	3423.0	2.0	21.0	1.0	0.0	1810.0	299.0	0	0	0
c	0	0	0	0	500.0	546.0	3423.0	2.0	85.0	3423.0	1.0	1.0	114.0	682.0	0	0	0
g	0	0	0	0	337.0	62.0	0.0	0.0	3423.0	49.0	0.0	3423.0	333.0	433.0	0	0	0
t	0	0	0	0	228.0	1264.0	0.0	0.0	14.0	6.0	3423.0	0.0	1613.0	3423.0	0	0	0