Myogenin_Rep2_motifs50/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i Myogenin_Rep2_motifs50/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Myogeni_Rep2_motifs50 -origin center -offset 0 -o Myogenin_Rep2_motifs50/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	Myogenin_Rep2_motifs50/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	Myogenin_Rep2_motifs50/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	3375
	Sum of sequence lengths      	515697
	Min sequence length          	0
	Max sequence length          	1101
	Average sequence length      	152
	Possible positions           	512322
 Oligonucleotide statistics:
	Total occurrences    	489628
 Position interval parameters:
	Position interval    	20
	Number of windows    	56
	Total positions      	512322
	Degrees of freedom   	55
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-28	[-559,-540]	-549.5	1	11
	2	-27	[-539,-520]	-529.5	1	20
	3	-26	[-519,-500]	-509.5	1	20
	4	-25	[-499,-480]	-489.5	1	20
	5	-24	[-479,-460]	-469.5	1	20
	6	-23	[-459,-440]	-449.5	1	20
	7	-22	[-439,-420]	-429.5	1	20
	8	-21	[-419,-400]	-409.5	1	20
	9	-20	[-399,-380]	-389.5	1	20
	10	-19	[-379,-360]	-369.5	2	24
	11	-18	[-359,-340]	-349.5	2	40
	12	-17	[-339,-320]	-329.5	2	40
	13	-16	[-319,-300]	-309.5	2	40
	14	-15	[-299,-280]	-289.5	2	40
	15	-14	[-279,-260]	-269.5	2	40
	16	-13	[-259,-240]	-249.5	3	58
	17	-12	[-239,-220]	-229.5	6	96
	18	-11	[-219,-200]	-209.5	8	138
	19	-10	[-199,-180]	-189.5	13	225
	20	-9	[-179,-160]	-169.5	33	427
	21	-8	[-159,-140]	-149.5	80	1177
	22	-7	[-139,-120]	-129.5	172	2464
	23	-6	[-119,-100]	-109.5	381	5382
	24	-5	[-99,-80]	-89.5	1089	13963
	25	-4	[-79,-60]	-69.5	2488	35525
	26	-3	[-59,-40]	-49.5	3375	64876
	27	-2	[-39,-20]	-29.5	3375	67500
	28	-1	[-19,0]	-9.5	3375	67500
	29	0	[1,20]	10.5	3375	67500
	30	1	[21,40]	30.5	3375	67500
	31	2	[41,60]	50.5	3375	62605
	32	3	[61,80]	70.5	2339	32791
	33	4	[81,100]	90.5	1011	12594
	34	5	[101,120]	110.5	353	4955
	35	6	[121,140]	130.5	160	2281
	36	7	[141,160]	150.5	76	1090
	37	8	[161,180]	170.5	31	389
	38	9	[181,200]	190.5	13	217
	39	10	[201,220]	210.5	8	134
	40	11	[221,240]	230.5	6	91
	41	12	[241,260]	250.5	3	57
	42	13	[261,280]	270.5	2	40
	43	14	[281,300]	290.5	2	40
	44	15	[301,320]	310.5	2	40
	45	16	[321,340]	330.5	2	40
	46	17	[341,360]	350.5	2	40
	47	18	[361,380]	370.5	2	23
	48	19	[381,400]	390.5	1	20
	49	20	[401,420]	410.5	1	20
	50	21	[421,440]	430.5	1	20
	51	22	[441,460]	450.5	1	20
	52	23	[461,480]	470.5	1	20
	53	24	[481,500]	490.5	1	20
	54	25	[501,520]	510.5	1	20
	55	26	[521,540]	530.5	1	20
	56	27	[541,560]	550.5	1	9

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-549.5         	occurrences in window	1	[-559,-540]
	11	-529.5         	occurrences in window	2	[-539,-520]
	12	-509.5         	occurrences in window	3	[-519,-500]
	13	-489.5         	occurrences in window	4	[-499,-480]
	14	-469.5         	occurrences in window	5	[-479,-460]
	15	-449.5         	occurrences in window	6	[-459,-440]
	16	-429.5         	occurrences in window	7	[-439,-420]
	17	-409.5         	occurrences in window	8	[-419,-400]
	18	-389.5         	occurrences in window	9	[-399,-380]
	19	-369.5         	occurrences in window	10	[-379,-360]
	20	-349.5         	occurrences in window	11	[-359,-340]
	21	-329.5         	occurrences in window	12	[-339,-320]
	22	-309.5         	occurrences in window	13	[-319,-300]
	23	-289.5         	occurrences in window	14	[-299,-280]
	24	-269.5         	occurrences in window	15	[-279,-260]
	25	-249.5         	occurrences in window	16	[-259,-240]
	26	-229.5         	occurrences in window	17	[-239,-220]
	27	-209.5         	occurrences in window	18	[-219,-200]
	28	-189.5         	occurrences in window	19	[-199,-180]
	29	-169.5         	occurrences in window	20	[-179,-160]
	30	-149.5         	occurrences in window	21	[-159,-140]
	31	-129.5         	occurrences in window	22	[-139,-120]
	32	-109.5         	occurrences in window	23	[-119,-100]
	33	-89.5          	occurrences in window	24	[-99,-80]
	34	-69.5          	occurrences in window	25	[-79,-60]
	35	-49.5          	occurrences in window	26	[-59,-40]
	36	-29.5          	occurrences in window	27	[-39,-20]
	37	-9.5           	occurrences in window	28	[-19,0]
	38	10.5           	occurrences in window	29	[1,20]
	39	30.5           	occurrences in window	30	[21,40]
	40	50.5           	occurrences in window	31	[41,60]
	41	70.5           	occurrences in window	32	[61,80]
	42	90.5           	occurrences in window	33	[81,100]
	43	110.5          	occurrences in window	34	[101,120]
	44	130.5          	occurrences in window	35	[121,140]
	45	150.5          	occurrences in window	36	[141,160]
	46	170.5          	occurrences in window	37	[161,180]
	47	190.5          	occurrences in window	38	[181,200]
	48	210.5          	occurrences in window	39	[201,220]
	49	230.5          	occurrences in window	40	[221,240]
	50	250.5          	occurrences in window	41	[241,260]
	51	270.5          	occurrences in window	42	[261,280]
	52	290.5          	occurrences in window	43	[281,300]
	53	310.5          	occurrences in window	44	[301,320]
	54	330.5          	occurrences in window	45	[321,340]
	55	350.5          	occurrences in window	46	[341,360]
	56	370.5          	occurrences in window	47	[361,380]
	57	390.5          	occurrences in window	48	[381,400]
	58	410.5          	occurrences in window	49	[401,420]
	59	430.5          	occurrences in window	50	[421,440]
	60	450.5          	occurrences in window	51	[441,460]
	61	470.5          	occurrences in window	52	[461,480]
	62	490.5          	occurrences in window	53	[481,500]
	63	510.5          	occurrences in window	54	[501,520]
	64	530.5          	occurrences in window	55	[521,540]
	65	550.5          	occurrences in window	56	[541,560]
seq id occ chi2 df Pval Eval sig rank -549.5 -529.5 -509.5 -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5 510.5 530.5 550.5
gc gc 48484 409.9 55 0.0e+00 0 300 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5 14 29 94 222 431 1210 3099 5828 6711 7149 7163 6519 5466 2775 1054 407 179 74 25 17 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
aa aa 18632 320.4 55 4.1e-39 6.5e-38 37.19 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 4 9 57 82 184 599 1566 2756 2415 2035 2148 2236 2362 1375 480 186 79 35 6 8 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
tt tt 18756 314.4 55 4.9e-38 7.9e-37 36.10 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 3 6 22 34 92 186 537 1449 2447 2226 2068 2172 2484 2693 1517 488 163 81 50 16 5 8 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
ta ta 10487 197.8 55 5.4e-18 8.6e-17 16.07 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 6 3 6 25 38 136 318 861 1438 1262 1145 1180 1323 1428 831 308 99 36 22 10 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
at at 15076 153.8 55 2.8e-11 4.4e-10 9.35 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 3 2 11 40 64 179 447 1166 2036 1986 1665 1765 1923 2015 1064 431 164 54 34 13 5 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ga ga 26508 150.5 55 8.2e-11 1.3e-09 8.88 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 4 9 24 76 134 306 802 2067 3633 3516 3214 3119 3359 3343 1743 670 290 116 49 15 12 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ca ca 44780 124.3 55 2.8e-07 4.5e-06 5.35 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 12 11 27 85 203 461 1199 3054 5680 6073 6382 6205 5734 5201 2682 1031 422 176 86 23 16 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
tg tg 45149 104.5 55 6.4e-05 0.001 2.99 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 5 21 32 81 218 466 1187 2940 5473 6068 6253 6325 6071 5380 2762 1097 419 191 82 24 13 19 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
gg gg 42808 84.5 55 6.5e-03 0.1 0.98 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 25 24 84 208 515 1221 3006 5572 5753 5315 5466 5776 5402 2698 1060 387 174 64 24 13 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ag ag 41309 75.4 55 3.6e-02 0.57 0.24 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 10 15 23 95 186 441 1180 2996 5408 5556 5678 5426 5208 4852 2566 998 392 155 76 20 16 6 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
tc tc 27009 60.7 55 2.8e-01 4.5 -0.65 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 7 5 24 49 113 270 776 1896 3469 3444 3451 3368 3563 3528 1828 724 253 125 67 16 9 8 6 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
gt gt 25658 58.5 55 3.5e-01 5.5 -0.74 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 7 17 14 35 126 263 718 1763 3175 3349 3435 3376 3438 3173 1669 645 234 119 46 17 4 21 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
ct ct 41943 56.1 55 4.3e-01 6.9 -0.84 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 10 10 33 83 176 437 1118 2782 5076 5471 5753 5704 5674 5166 2687 1057 375 189 81 20 14 7 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
cc cc 43373 50.1 55 6.6e-01 11 -1.02 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 7 6 10 32 84 219 448 1165 3098 5723 5873 5648 5461 5715 5350 2769 1005 404 194 97 21 20 11 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
cg cg 14236 44.4 55 8.5e-01 14 -1.13 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 11 38 64 113 357 945 1867 1933 1849 1927 1996 1745 873 306 113 52 22 9 6 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ac ac 25420 22.8 55 1.0e+00 16 -1.20 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 8 9 16 62 112 284 684 1840 3301 3360 3361 3337 3291 3084 1654 567 255 117 44 14 9 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 
 Host name	pedagogix
 Job started	2020-04-13.202137
 Job done	2020-04-13.202143
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