Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10.tf
		file1	1	15	351
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m10 MA1485.1 dyads_m10dyads_m10 FERD3L 0.745 0.695 15 14 14 15 0.9333 0.9333 1.0000 R 1
dyads_m10 MA0499.2 dyads_m10dyads_m10 MYOD1 0.777 0.673 15 13 13 15 0.8667 0.8667 1.0000 R 1
dyads_m10 MA1619.1 dyads_m10dyads_m10 Ptf1a(var.2) 0.830 0.664 15 12 12 15 0.8000 0.8000 1.0000 R 2
dyads_m10 MA1641.1 dyads_m10dyads_m10 MYF5 0.827 0.662 15 12 12 15 0.8000 0.8000 1.0000 R 2
dyads_m10 MA1109.1 dyads_m10dyads_m10 NEUROD1 0.745 0.646 15 13 13 15 0.8667 0.8667 1.0000 D 2
dyads_m10 MA0521.1 dyads_m10dyads_m10 Tcf12 0.878 0.644 15 11 11 15 0.7333 0.7333 1.0000 D 3
dyads_m10 MA1123.2 dyads_m10dyads_m10 TWIST1 0.722 0.626 15 13 13 15 0.8667 0.8667 1.0000 R 2
dyads_m10 MA0500.2 dyads_m10dyads_m10 MYOG 0.778 0.622 15 12 12 15 0.8000 0.8000 1.0000 R 2
dyads_m10 MA1642.1 dyads_m10dyads_m10 NEUROG2(var.2) 0.712 0.617 15 13 13 15 0.8667 0.8667 1.0000 D 1
dyads_m10 MA0796.1 dyads_m10dyads_m10 TGIF1 0.752 0.602 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m10 MA1571.1 dyads_m10dyads_m10 TGIF2LX 0.747 0.597 15 12 12 15 0.8000 0.8000 1.0000 R 2
dyads_m10 MA0797.1 dyads_m10dyads_m10 TGIF2 0.736 0.589 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m10 MA1572.1 dyads_m10dyads_m10 TGIF2LY 0.729 0.583 15 12 12 15 0.8000 0.8000 1.0000 R 2
dyads_m10 MA1467.1 dyads_m10dyads_m10 ATOH1(var.2) 0.831 0.554 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m10 MA1635.1 dyads_m10dyads_m10 BHLHE22(var.2) 0.831 0.554 15 10 10 15 0.6667 0.6667 1.0000 D 3
dyads_m10 MA1472.1 dyads_m10dyads_m10 BHLHA15(var.2) 0.822 0.548 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m10 MA1100.2 dyads_m10dyads_m10 ASCL1 0.770 0.514 15 10 10 15 0.6667 0.6667 1.0000 D 3
dyads_m10 MA0048.2 dyads_m10dyads_m10 NHLH1 0.742 0.495 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m10 MA0816.1 dyads_m10dyads_m10 Ascl2 0.740 0.493 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m10 MA0691.1 dyads_m10dyads_m10 TFAP4 0.729 0.486 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m10 MA0665.1 dyads_m10dyads_m10 MSC 0.721 0.480 15 10 10 15 0.6667 0.6667 1.0000 D 3
dyads_m10 MA0774.1 dyads_m10dyads_m10 MEIS2 0.890 0.475 15 8 8 15 0.5333 0.5333 1.0000 D 1
dyads_m10 MA0820.1 dyads_m10dyads_m10 FIGLA 0.706 0.471 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m10 MA0775.1 dyads_m10dyads_m10 MEIS3 0.857 0.457 15 8 8 15 0.5333 0.5333 1.0000 D 1
dyads_m10 MA0782.2 dyads_m10dyads_m10 PKNOX1 0.727 0.421 15 15 11 19 0.5789 0.7333 0.7333 D -4
dyads_m10 MA0498.2 dyads_m10dyads_m10 MEIS1 0.901 0.421 15 7 7 15 0.4667 0.4667 1.0000 D 1 
 Host name	pedagogix
 Job started	2020-04-13.235907
 Job done	2020-04-13.235936
 Seconds	4.45
	user	4.45
	system	0.51
	cuser	22.42
;	csystem	1.38