One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m11/peak-motifs_dyads_m11.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m11/peak-motifs_dyads_m11_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m11_shift1 ; 7 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m11_shift1 (dyads_m11dyads_m11)     
; dyads_m11 (dyads_m11dyads_m11); m=0 (reference); ncol1=10; shift=1; ncol=16; -wvACCACAgs-----
; Alignment reference
a	0	197	213	751	0	0	751	0	751	123	175	0	0	0	0	0
c	0	180	241	0	751	749	0	751	0	163	237	0	0	0	0	0
g	0	140	221	0	0	2	0	0	0	365	212	0	0	0	0	0
t	0	234	76	0	0	0	0	0	0	100	127	0	0	0	0	0
MA0002.2_rc_shift1 (RUNX1_rc) 
; dyads_m11 versus MA0002.2_rc (RUNX1_rc); m=1/6; ncol2=11; w=10; offset=0; strand=R; shift=1; score=0.845237; -waaCCACAram----
; cor=; Ncor=
a	0	1053.0	1325.0	1339.0	93.0	13.0	1716.0	53.0	1936.0	656.0	814.0	521.0	0	0	0	0
c	0	289.0	81.0	251.0	1848.0	1987.0	70.0	1872.0	7.0	149.0	467.0	696.0	0	0	0	0
g	0	158.0	463.0	400.0	42.0	0.0	127.0	75.0	0.0	1072.0	485.0	496.0	0	0	0	0
t	0	500.0	131.0	10.0	17.0	0.0	87.0	0.0	57.0	123.0	234.0	287.0	0	0	0	0
MA0511.2_shift1 (RUNX2) 
; dyads_m11 versus MA0511.2 (RUNX2); m=2/6; ncol2=9; w=9; offset=0; strand=D; shift=1; score=0.724813; -wAACCRCAa------
; cor=; Ncor=
a	0	3872.0	6621.0	6621.0	0.0	0.0	1914.0	0.0	6621.0	4202.0	0	0	0	0	0	0
c	0	1092.0	556.0	325.0	6621.0	6621.0	36.0	6621.0	476.0	677.0	0	0	0	0	0	0
g	0	326.0	1215.0	0.0	0.0	0.0	4707.0	0.0	458.0	1134.0	0	0	0	0	0	0
t	0	2748.0	582.0	0.0	0.0	0.0	120.0	0.0	191.0	607.0	0	0	0	0	0	0
MA0684.2_shift0 (RUNX3) 
; dyads_m11 versus MA0684.2 (RUNX3); m=3/6; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.675545; awAACCTCAawh----
; cor=; Ncor=
a	7768.0	9558.0	19136.0	26243.0	427.0	495.0	6357.0	611.0	26121.0	16137.0	8778.0	6879.0	0	0	0	0
c	6083.0	5007.0	2662.0	315.0	26293.0	26208.0	419.0	26015.0	414.0	3077.0	5994.0	6900.0	0	0	0	0
g	6685.0	3547.0	3500.0	431.0	198.0	385.0	1911.0	390.0	338.0	4696.0	5642.0	6372.0	0	0	0	0
t	6841.0	9265.0	2079.0	388.0	459.0	289.0	18690.0	361.0	504.0	3467.0	6963.0	7226.0	0	0	0	0
MA0695.1_shift0 (ZBTB7C) 
; dyads_m11 versus MA0695.1 (ZBTB7C); m=4/6; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.616246; rcgACCACCgam----
; cor=; Ncor=
a	272.0	183.0	351.0	1018.0	39.0	0.0	1018.0	18.0	90.0	253.0	1018.0	333.0	0	0	0	0
c	118.0	1018.0	128.0	225.0	1018.0	1018.0	269.0	1018.0	1018.0	138.0	444.0	315.0	0	0	0	0
g	463.0	215.0	1018.0	8.0	0.0	5.0	8.0	7.0	54.0	527.0	251.0	196.0	0	0	0	0
t	164.0	110.0	137.0	24.0	0.0	14.0	10.0	17.0	90.0	100.0	419.0	174.0	0	0	0	0
MA0130.1_shift2 (ZNF354C) 
; dyads_m11 versus MA0130.1 (ZNF354C); m=5/6; ncol2=6; w=6; offset=1; strand=D; shift=2; score=0.498729; --mTCCAC--------
; cor=; Ncor=
a	0	0	7.0	3.0	0.0	0.0	16.0	0.0	0	0	0	0	0	0	0	0
c	0	0	6.0	2.0	16.0	16.0	0.0	15.0	0	0	0	0	0	0	0	0
g	0	0	3.0	0.0	0.0	0.0	0.0	1.0	0	0	0	0	0	0	0	0
t	0	0	0.0	11.0	0.0	0.0	0.0	0.0	0	0	0	0	0	0	0	0
MA1514.1_shift2 (KLF17) 
; dyads_m11 versus MA1514.1 (KLF17); m=6/6; ncol2=15; w=9; offset=1; strand=D; shift=2; score=0.412075; --mmCCACgCaCCCmt
; cor=; Ncor=
a	0	0	8969.0	19057.0	221.0	144.0	28922.0	85.0	7236.0	4563.0	19142.0	827.0	132.0	221.0	12266.0	3892.0
c	0	0	14366.0	9728.0	30181.0	30201.0	197.0	30107.0	6958.0	29153.0	1076.0	29551.0	30200.0	30199.0	14825.0	4873.0
g	0	0	3318.0	2102.0	122.0	105.0	84.0	53.0	24407.0	104.0	5176.0	1410.0	201.0	80.0	3845.0	2368.0
t	0	0	3579.0	2132.0	114.0	87.0	2495.0	423.0	1243.0	373.0	8373.0	220.0	57.0	233.0	3318.0	23588.0