Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12.tf
		file1	1	15	225
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m12 MA0499.2 dyads_m12dyads_m12 MYOD1 0.925 0.802 15 13 13 15 0.8667 0.8667 1.0000 D 1
dyads_m12 MA0745.2 dyads_m12dyads_m12 SNAI2 0.859 0.745 15 13 13 15 0.8667 0.8667 1.0000 D 1
dyads_m12 MA1621.1 dyads_m12dyads_m12 Rbpjl 0.794 0.741 15 14 14 15 0.9333 0.9333 1.0000 D 0
dyads_m12 MA0830.2 dyads_m12dyads_m12 TCF4 0.791 0.685 15 13 13 15 0.8667 0.8667 1.0000 D 1
dyads_m12 MA1485.1 dyads_m12dyads_m12 FERD3L 0.728 0.679 15 14 14 15 0.9333 0.9333 1.0000 D 0
dyads_m12 MA1631.1 dyads_m12dyads_m12 ASCL1(var.2) 0.770 0.667 15 13 13 15 0.8667 0.8667 1.0000 D 1
dyads_m12 MA0832.1 dyads_m12dyads_m12 Tcf21 0.705 0.658 15 14 14 15 0.9333 0.9333 1.0000 R 0
dyads_m12 MA0521.1 dyads_m12dyads_m12 Tcf12 0.862 0.632 15 11 11 15 0.7333 0.7333 1.0000 R 1
dyads_m12 MA1618.1 dyads_m12dyads_m12 Ptf1a 0.723 0.626 15 13 13 15 0.8667 0.8667 1.0000 R 0
dyads_m12 MA0500.2 dyads_m12dyads_m12 MYOG 0.770 0.616 15 12 12 15 0.8000 0.8000 1.0000 R 1
dyads_m12 MA1620.1 dyads_m12dyads_m12 Ptf1a(var.3) 0.769 0.615 15 12 12 15 0.8000 0.8000 1.0000 D 1
dyads_m12 MA1641.1 dyads_m12dyads_m12 MYF5 0.753 0.602 15 12 12 15 0.8000 0.8000 1.0000 R 1
dyads_m12 MA1619.1 dyads_m12dyads_m12 Ptf1a(var.2) 0.746 0.597 15 12 12 15 0.8000 0.8000 1.0000 D 1
dyads_m12 MA0783.1 dyads_m12dyads_m12 PKNOX2 0.713 0.571 15 12 12 15 0.8000 0.8000 1.0000 R 1
dyads_m12 MA0797.1 dyads_m12dyads_m12 TGIF2 0.706 0.565 15 12 12 15 0.8000 0.8000 1.0000 R 1
dyads_m12 MA1467.1 dyads_m12dyads_m12 ATOH1(var.2) 0.828 0.552 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m12 MA1100.2 dyads_m12dyads_m12 ASCL1 0.813 0.542 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m12 MA1559.1 dyads_m12dyads_m12 SNAI3 0.805 0.537 15 10 10 15 0.6667 0.6667 1.0000 R 2
dyads_m12 MA0816.1 dyads_m12dyads_m12 Ascl2 0.802 0.535 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m12 MA1472.1 dyads_m12dyads_m12 BHLHA15(var.2) 0.797 0.531 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m12 MA0103.3 dyads_m12dyads_m12 ZEB1 0.720 0.528 15 11 11 15 0.7333 0.7333 1.0000 D 2
dyads_m12 MA0820.1 dyads_m12dyads_m12 FIGLA 0.791 0.527 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m12 MA1558.1 dyads_m12dyads_m12 SNAI1 0.787 0.524 15 10 10 15 0.6667 0.6667 1.0000 R 2
dyads_m12 MA1635.1 dyads_m12dyads_m12 BHLHE22(var.2) 0.755 0.503 15 10 10 15 0.6667 0.6667 1.0000 R 2
dyads_m12 MA0665.1 dyads_m12dyads_m12 MSC 0.750 0.500 15 10 10 15 0.6667 0.6667 1.0000 R 2
dyads_m12 MA0774.1 dyads_m12dyads_m12 MEIS2 0.937 0.500 15 8 8 15 0.5333 0.5333 1.0000 R 6
dyads_m12 MA0667.1 dyads_m12dyads_m12 MYF6 0.749 0.500 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m12 MA0775.1 dyads_m12dyads_m12 MEIS3 0.914 0.488 15 8 8 15 0.5333 0.5333 1.0000 R 6
dyads_m12 MA0048.2 dyads_m12dyads_m12 NHLH1 0.731 0.487 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m12 MA0691.1 dyads_m12dyads_m12 TFAP4 0.715 0.477 15 10 10 15 0.6667 0.6667 1.0000 R 2
dyads_m12 MA0782.2 dyads_m12dyads_m12 PKNOX1 0.750 0.434 15 15 11 19 0.5789 0.7333 0.7333 R 4
dyads_m12 MA1114.1 dyads_m12dyads_m12 PBX3 0.721 0.432 15 17 12 20 0.6000 0.8000 0.7059 R 3
dyads_m12 MA0498.2 dyads_m12dyads_m12 MEIS1 0.900 0.420 15 7 7 15 0.4667 0.4667 1.0000 R 7 
 Host name	pedagogix
 Job started	2020-04-13.235944
 Job done	2020-04-14.000022
 Seconds	6.04
	user	6.04
	system	0.62
	cuser	30.2
;	csystem	1.66