One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m13/peak-motifs_dyads_m13.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m13/peak-motifs_dyads_m13_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m13_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m13_shift1 (dyads_m13dyads_m13)
; dyads_m13 (dyads_m13dyads_m13); m=0 (reference); ncol1=10; shift=1; ncol=13; -cdGCCACChs-- ; Alignment reference a 0 172 238 0 0 0 876 0 0 242 140 0 0 c 0 387 93 0 876 867 0 876 876 246 266 0 0 g 0 180 243 876 0 9 0 0 0 112 350 0 0 t 0 137 302 0 0 0 0 0 0 276 120 0 0

MA0739.1_shift1 (Hic1)
; dyads_m13 versus MA0739.1 (Hic1); m=1/8; ncol2=9; w=9; offset=0; strand=D; shift=1; score=0.676119; -rTGCCAaCc--- ; cor=; Ncor= a 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 0 0 c 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 0 0 g 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 0 0 t 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0 0 0

MA1102.2_rc_shift1 (CTCFL_rc)
; dyads_m13 versus MA1102.2_rc (CTCFL_rc); m=2/8; ncol2=12; w=10; offset=0; strand=R; shift=1; score=0.601278; -scGCCCCCTGsy ; cor=; Ncor= a 0 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 c 0 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 g 0 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 t 0 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0

MA0695.1_shift0 (ZBTB7C)
; dyads_m13 versus MA0695.1 (ZBTB7C); m=3/8; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.594345; rcgACCACCgam- ; cor=; Ncor= a 272.0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 253.0 1018.0 333.0 0 c 118.0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 138.0 444.0 315.0 0 g 463.0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 527.0 251.0 196.0 0 t 164.0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 100.0 419.0 174.0 0

MA0671.1_shift0 (NFIX)
; dyads_m13 versus MA0671.1 (NFIX); m=4/8; ncol2=9; w=8; offset=-1; strand=D; shift=0; score=0.509298; sgtGCCArv---- ; cor=; Ncor= a 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 0 0 0 0 c 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 0 0 0 0 g 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 0 0 0 0 t 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0 0 0 0 0

MA0130.1_shift2 (ZNF354C)
; dyads_m13 versus MA0130.1 (ZNF354C); m=5/8; ncol2=6; w=6; offset=1; strand=D; shift=2; score=0.451112; --mTCCAC----- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0

MA0522.3_shift3 (TCF3)
; dyads_m13 versus MA0522.3 (TCF3); m=6/8; ncol2=11; w=8; offset=2; strand=D; shift=3; score=0.447148; ---svCACCTGCs ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0

MA1648.1_shift3 (TCF12(var.2))
; dyads_m13 versus MA1648.1 (TCF12(var.2)); m=7/8; ncol2=11; w=8; offset=2; strand=D; shift=3; score=0.445022; ---ssCACCTGCy ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0

MA0103.3_shift3 (ZEB1)
; dyads_m13 versus MA0103.3 (ZEB1); m=8/8; ncol2=11; w=8; offset=2; strand=D; shift=3; score=0.44074; ---ssCACCTGss ; cor=; Ncor= a 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 c 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 g 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 t 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m13_shift1 (dyads_m13dyads_m13)				; dyads_m13 (dyads_m13dyads_m13); m=0 (reference); ncol1=10; shift=1; ncol=13; -cdGCCACChs-- ; Alignment reference a 0 172 238 0 0 0 876 0 0 242 140 0 0 c 0 387 93 0 876 867 0 876 876 246 266 0 0 g 0 180 243 876 0 9 0 0 0 112 350 0 0 t 0 137 302 0 0 0 0 0 0 276 120 0 0
MA0739.1_shift1 (Hic1)				; dyads_m13 versus MA0739.1 (Hic1); m=1/8; ncol2=9; w=9; offset=0; strand=D; shift=1; score=0.676119; -rTGCCAaCc--- ; cor=; Ncor= a 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 0 0 c 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 0 0 g 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 0 0 t 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0 0 0
MA1102.2_rc_shift1 (CTCFL_rc)				; dyads_m13 versus MA1102.2_rc (CTCFL_rc); m=2/8; ncol2=12; w=10; offset=0; strand=R; shift=1; score=0.601278; -scGCCCCCTGsy ; cor=; Ncor= a 0 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 c 0 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 g 0 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 t 0 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0
MA0695.1_shift0 (ZBTB7C)				; dyads_m13 versus MA0695.1 (ZBTB7C); m=3/8; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.594345; rcgACCACCgam- ; cor=; Ncor= a 272.0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 253.0 1018.0 333.0 0 c 118.0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 138.0 444.0 315.0 0 g 463.0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 527.0 251.0 196.0 0 t 164.0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 100.0 419.0 174.0 0
MA0671.1_shift0 (NFIX)				; dyads_m13 versus MA0671.1 (NFIX); m=4/8; ncol2=9; w=8; offset=-1; strand=D; shift=0; score=0.509298; sgtGCCArv---- ; cor=; Ncor= a 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 0 0 0 0 c 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 0 0 0 0 g 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 0 0 0 0 t 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0 0 0 0 0
MA0130.1_shift2 (ZNF354C)				; dyads_m13 versus MA0130.1 (ZNF354C); m=5/8; ncol2=6; w=6; offset=1; strand=D; shift=2; score=0.451112; --mTCCAC----- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0
MA0522.3_shift3 (TCF3)				; dyads_m13 versus MA0522.3 (TCF3); m=6/8; ncol2=11; w=8; offset=2; strand=D; shift=3; score=0.447148; ---svCACCTGCs ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0
MA1648.1_shift3 (TCF12(var.2))				; dyads_m13 versus MA1648.1 (TCF12(var.2)); m=7/8; ncol2=11; w=8; offset=2; strand=D; shift=3; score=0.445022; ---ssCACCTGCy ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0
MA0103.3_shift3 (ZEB1)				; dyads_m13 versus MA0103.3 (ZEB1); m=8/8; ncol2=11; w=8; offset=2; strand=D; shift=3; score=0.44074; ---ssCACCTGss ; cor=; Ncor= a 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 c 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 g 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 t 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0