Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m14/peak-motifs_dyads_m14.tf
		file1	1	15	136
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m14 MA0039.4 dyads_m14dyads_m14 KLF4 0.911 0.729 15 12 12 15 0.8000 0.8000 1.0000 D 1
dyads_m14 MA1107.2 dyads_m14dyads_m14 KLF9 0.715 0.670 15 16 15 16 0.9375 1.0000 0.9375 D 0
dyads_m14 MA1653.1 dyads_m14dyads_m14 ZNF148 0.817 0.653 15 12 12 15 0.8000 0.8000 1.0000 D 1
dyads_m14 MA0746.2 dyads_m14dyads_m14 SP3 0.744 0.644 15 13 13 15 0.8667 0.8667 1.0000 D 1
dyads_m14 MA0516.2 dyads_m14dyads_m14 SP2 0.727 0.641 15 17 15 17 0.8824 1.0000 0.8824 D -2
dyads_m14 MA0753.2 dyads_m14dyads_m14 ZNF740 0.730 0.633 15 13 13 15 0.8667 0.8667 1.0000 D 0
dyads_m14 MA0599.1 dyads_m14dyads_m14 KLF5 0.936 0.624 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m14 MA0685.1 dyads_m14dyads_m14 SP4 0.704 0.622 15 17 15 17 0.8824 1.0000 0.8824 D -1
dyads_m14 MA0079.4 dyads_m14dyads_m14 SP1 0.708 0.620 15 15 14 16 0.8750 0.9333 0.9333 D -1
dyads_m14 MA1513.1 dyads_m14dyads_m14 KLF15 0.841 0.617 15 11 11 15 0.7333 0.7333 1.0000 D 2
dyads_m14 MA1522.1 dyads_m14dyads_m14 MAZ 0.815 0.598 15 11 11 15 0.7333 0.7333 1.0000 D 1
dyads_m14 MA1515.1 dyads_m14dyads_m14 KLF2 0.811 0.595 15 11 11 15 0.7333 0.7333 1.0000 D 1
dyads_m14 MA1564.1 dyads_m14dyads_m14 SP9 0.737 0.589 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m14 MA1511.1 dyads_m14dyads_m14 KLF10 0.797 0.585 15 11 11 15 0.7333 0.7333 1.0000 D 2
dyads_m14 MA0741.1 dyads_m14dyads_m14 KLF16 0.794 0.583 15 11 11 15 0.7333 0.7333 1.0000 D 2
dyads_m14 MA0493.1 dyads_m14dyads_m14 Klf1 0.786 0.576 15 11 11 15 0.7333 0.7333 1.0000 D 1
dyads_m14 MA0747.1 dyads_m14dyads_m14 SP8 0.707 0.566 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m14 MA1517.1 dyads_m14dyads_m14 KLF6 0.745 0.546 15 11 11 15 0.7333 0.7333 1.0000 D 1
dyads_m14 MA1512.1 dyads_m14dyads_m14 KLF11 0.707 0.519 15 11 11 15 0.7333 0.7333 1.0000 D 2
dyads_m14 MA1516.1 dyads_m14dyads_m14 KLF3 0.707 0.518 15 11 11 15 0.7333 0.7333 1.0000 D 1
dyads_m14 MA1578.1 dyads_m14dyads_m14 VEZF1 0.731 0.487 15 10 10 15 0.6667 0.6667 1.0000 D 4
dyads_m14 MA1630.1 dyads_m14dyads_m14 Znf281 0.719 0.449 15 11 10 16 0.6250 0.6667 0.9091 R -1 
 Host name	pedagogix
 Job started	2020-04-14.000034
 Job done	2020-04-14.000056
 Seconds	3.18
	user	3.18
	system	0.41
	cuser	17.19
;	csystem	1.07