Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16.tf
		file1	1	15	218
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m16 MA1653.1 dyads_m16dyads_m16 ZNF148 0.955 0.764 15 12 12 15 0.8000 0.8000 1.0000 D 1
dyads_m16 MA1522.1 dyads_m16dyads_m16 MAZ 0.926 0.679 15 11 11 15 0.7333 0.7333 1.0000 D 1
dyads_m16 MA0516.2 dyads_m16dyads_m16 SP2 0.763 0.673 15 17 15 17 0.8824 1.0000 0.8824 D -2
dyads_m16 MA0753.2 dyads_m16dyads_m16 ZNF740 0.775 0.672 15 13 13 15 0.8667 0.8667 1.0000 D 0
dyads_m16 MA0746.2 dyads_m16dyads_m16 SP3 0.766 0.664 15 13 13 15 0.8667 0.8667 1.0000 D 1
dyads_m16 MA0039.4 dyads_m16dyads_m16 KLF4 0.810 0.648 15 12 12 15 0.8000 0.8000 1.0000 D 1
dyads_m16 MA0685.1 dyads_m16dyads_m16 SP4 0.718 0.634 15 17 15 17 0.8824 1.0000 0.8824 D -1
dyads_m16 MA0079.4 dyads_m16dyads_m16 SP1 0.716 0.626 15 15 14 16 0.8750 0.9333 0.9333 D -1
dyads_m16 MA1513.1 dyads_m16dyads_m16 KLF15 0.836 0.613 15 11 11 15 0.7333 0.7333 1.0000 D 2
dyads_m16 MA1564.1 dyads_m16dyads_m16 SP9 0.765 0.612 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m16 MA0741.1 dyads_m16dyads_m16 KLF16 0.828 0.608 15 11 11 15 0.7333 0.7333 1.0000 D 2
dyads_m16 MA0599.1 dyads_m16dyads_m16 KLF5 0.906 0.604 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0747.1 dyads_m16dyads_m16 SP8 0.754 0.604 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m16 MA1627.1 dyads_m16dyads_m16 Wt1 0.849 0.600 15 14 12 17 0.7059 0.8000 0.8571 D 3
dyads_m16 MA0528.2 dyads_m16dyads_m16 ZNF263 0.735 0.588 15 12 12 15 0.8000 0.8000 1.0000 R 2
dyads_m16 MA1630.1 dyads_m16dyads_m16 Znf281 0.905 0.566 15 11 10 16 0.6250 0.6667 0.9091 R 5
dyads_m16 MA1515.1 dyads_m16dyads_m16 KLF2 0.746 0.547 15 11 11 15 0.7333 0.7333 1.0000 D 1
dyads_m16 MA1511.1 dyads_m16dyads_m16 KLF10 0.727 0.533 15 11 11 15 0.7333 0.7333 1.0000 D 2
dyads_m16 MA1512.1 dyads_m16dyads_m16 KLF11 0.726 0.532 15 11 11 15 0.7333 0.7333 1.0000 D 2
dyads_m16 MA1578.1 dyads_m16dyads_m16 VEZF1 0.742 0.494 15 10 10 15 0.6667 0.6667 1.0000 D 5
dyads_m16 MA0057.1 dyads_m16dyads_m16 MZF1(var.2) 0.727 0.484 15 10 10 15 0.6667 0.6667 1.0000 R 0 
 Host name	pedagogix
 Job started	2020-04-14.000100
 Job done	2020-04-14.000120
 Seconds	3.09
	user	3.09
	system	0.36
	cuser	16.05
;	csystem	1.13