One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m17/peak-motifs_dyads_m17.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m17/peak-motifs_dyads_m17_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m17_shift1 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m17_shift1 (dyads_m17dyads_m17) |
 |
|
|
; dyads_m17 (dyads_m17dyads_m17); m=0 (reference); ncol1=14; shift=1; ncol=15; -csCCGCssCCGCss
; Alignment reference
a 0 69 67 9 13 18 7 47 63 11 12 19 13 74 66
c 0 337 196 585 599 37 597 337 214 597 581 31 598 318 216
g 0 159 321 44 29 587 37 205 303 33 46 582 34 195 292
t 0 92 73 19 16 15 16 68 77 16 18 25 12 70 83
|
| MA0162.4_shift1 (EGR1) |
 |
|
|
; dyads_m17 versus MA0162.4 (EGR1); m=1/2; ncol2=14; w=14; offset=0; strand=D; shift=1; score=0.719224; -ccmCGCCCACgCms
; cor=; Ncor=
a 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0
c 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0
g 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0
t 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0
|
| MA1513.1_shift0 (KLF15) |
 |
|
|
; dyads_m17 versus MA1513.1 (KLF15); m=2/2; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.515665; scCCCGCCCcs----
; cor=; Ncor=
a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0
c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0
g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0
t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0
|