Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m20/peak-motifs_dyads_m20_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m20/peak-motifs_dyads_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m20/peak-motifs_dyads_m20_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m20/peak-motifs_dyads_m20.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m20/peak-motifs_dyads_m20_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m20/peak-motifs_dyads_m20_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m20/peak-motifs_dyads_m20_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m20/peak-motifs_dyads_m20_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m20/peak-motifs_dyads_m20_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m20/peak-motifs_dyads_m20_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m20/peak-motifs_dyads_m20.tf
		file1	1	11	340
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m20 MA1634.1 dyads_m20dyads_m20 BATF 0.962 0.962 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m20 MA0462.2 dyads_m20dyads_m20 BATF::JUN 0.962 0.962 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m20 MA0835.2 dyads_m20dyads_m20 BATF3 0.954 0.954 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m20 MA0476.1 dyads_m20dyads_m20 FOS 0.921 0.921 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m20 MA1130.1 dyads_m20dyads_m20 FOSL2::JUN 0.954 0.875 11 12 11 12 0.9167 1.0000 0.9167 R 0
dyads_m20 MA0841.1 dyads_m20dyads_m20 NFE2 0.873 0.873 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m20 MA0099.3 dyads_m20dyads_m20 FOS::JUN 0.949 0.863 11 10 10 11 0.9091 0.9091 1.0000 R 0
dyads_m20 MA1134.1 dyads_m20dyads_m20 FOS::JUNB 0.936 0.858 11 12 11 12 0.9167 1.0000 0.9167 R -1
dyads_m20 MA1135.1 dyads_m20dyads_m20 FOSB::JUNB 0.939 0.854 11 10 10 11 0.9091 0.9091 1.0000 D 0
dyads_m20 MA1144.1 dyads_m20dyads_m20 FOSL2::JUND 0.938 0.853 11 10 10 11 0.9091 0.9091 1.0000 D 0
dyads_m20 MA1138.1 dyads_m20dyads_m20 FOSL2::JUNB 0.935 0.850 11 10 10 11 0.9091 0.9091 1.0000 D 0
dyads_m20 MA1142.1 dyads_m20dyads_m20 FOSL1::JUND 0.928 0.844 11 10 10 11 0.9091 0.9091 1.0000 D 0
dyads_m20 MA1132.1 dyads_m20dyads_m20 JUN::JUNB 0.916 0.833 11 10 10 11 0.9091 0.9091 1.0000 D 0
dyads_m20 MA1141.1 dyads_m20dyads_m20 FOS::JUND 0.957 0.810 11 13 11 13 0.8462 1.0000 0.8462 R -1
dyads_m20 MA1128.1 dyads_m20dyads_m20 FOSL1::JUN 0.953 0.807 11 13 11 13 0.8462 1.0000 0.8462 D -1
dyads_m20 MA0477.2 dyads_m20dyads_m20 FOSL1 0.950 0.804 11 13 11 13 0.8462 1.0000 0.8462 D -1
dyads_m20 MA0478.1 dyads_m20dyads_m20 FOSL2 0.954 0.795 11 11 10 12 0.8333 0.9091 0.9091 D -1
dyads_m20 MA1137.1 dyads_m20dyads_m20 FOSL1::JUNB 0.939 0.794 11 13 11 13 0.8462 1.0000 0.8462 D -1
dyads_m20 MA0491.2 dyads_m20dyads_m20 JUND 0.925 0.783 11 13 11 13 0.8462 1.0000 0.8462 D -1
dyads_m20 MA0490.2 dyads_m20dyads_m20 JUNB 0.924 0.782 11 13 11 13 0.8462 1.0000 0.8462 D -1
dyads_m20 MA1633.1 dyads_m20dyads_m20 BACH1 0.914 0.773 11 13 11 13 0.8462 1.0000 0.8462 D 0
dyads_m20 MA1622.1 dyads_m20dyads_m20 Smad2::Smad3 0.973 0.764 11 14 11 14 0.7857 1.0000 0.7857 D -2
dyads_m20 MA0655.1 dyads_m20dyads_m20 JDP2 0.895 0.732 11 9 9 11 0.8182 0.8182 1.0000 D 1
dyads_m20 MA0496.3 dyads_m20dyads_m20 MAFK 0.900 0.660 11 15 11 15 0.7333 1.0000 0.7333 D -1
dyads_m20 MA0591.1 dyads_m20dyads_m20 Bach1::Mafk 0.869 0.637 11 15 11 15 0.7333 1.0000 0.7333 D -2
dyads_m20 MA0489.1 dyads_m20dyads_m20 JUN(var.2) 0.941 0.627 11 14 10 15 0.6667 0.9091 0.7143 D -4
dyads_m20 MA0150.2 dyads_m20dyads_m20 Nfe2l2 0.840 0.616 11 15 11 15 0.7333 1.0000 0.7333 D -3
dyads_m20 MA0089.2 dyads_m20dyads_m20 NFE2L1 0.868 0.596 11 16 11 16 0.6875 1.0000 0.6875 D -2
dyads_m20 MA0501.1 dyads_m20dyads_m20 MAF::NFE2 0.865 0.541 11 15 10 16 0.6250 0.9091 0.6667 D 1
dyads_m20 MA1521.1 dyads_m20dyads_m20 MAFA 0.709 0.520 11 15 11 15 0.7333 1.0000 0.7333 R -2
dyads_m20 MA1520.1 dyads_m20dyads_m20 MAF 0.707 0.518 11 15 11 15 0.7333 1.0000 0.7333 R -2
dyads_m20 MA1101.2 dyads_m20dyads_m20 BACH2 0.854 0.494 11 19 11 19 0.5789 1.0000 0.5789 D -4
dyads_m20 MA0067.1 dyads_m20dyads_m20 Pax2 0.819 0.478 11 8 7 12 0.5833 0.6364 0.8750 R -1
dyads_m20 MA1114.1 dyads_m20dyads_m20 PBX3 0.701 0.454 11 17 11 17 0.6471 1.0000 0.6471 R -5 
 Host name	pedagogix
 Job started	2020-04-14.000204
 Job done	2020-04-14.000246
 Seconds	6.05
	user	6.05
	system	0.73
	cuser	33.48
;	csystem	1.93