One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m21_shift5 ; 16 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m21_shift5 (dyads_m21dyads_m21)    
; dyads_m21 (dyads_m21dyads_m21); m=0 (reference); ncol1=10; shift=5; ncol=15; -----sdGGTGACwg
; Alignment reference
a	0	0	0	0	0	94	136	0	0	0	3	508	0	202	82
c	0	0	0	0	0	167	66	2	0	17	0	0	508	99	110
g	0	0	0	0	0	156	159	506	508	0	504	0	0	56	210
t	0	0	0	0	0	91	147	0	0	491	1	0	0	151	106
MA0067.1_rc_shift6 (Pax2_rc)
; dyads_m21 versus MA0067.1_rc (Pax2_rc); m=1/15; ncol2=8; w=8; offset=1; strand=R; shift=6; score=0.572384; ------vmrTGAcw-
; cor=; Ncor=
a	0	0	0	0	0	0	8.0	10.0	11.0	1.0	2.0	26.0	2.0	9.0	0
c	0	0	0	0	0	0	11.0	19.0	1.0	3.0	1.0	0.0	21.0	5.0	0
g	0	0	0	0	0	0	11.0	0.0	17.0	1.0	28.0	2.0	1.0	7.0	0
t	0	0	0	0	0	0	1.0	2.0	2.0	26.0	0.0	3.0	7.0	10.0	0
MA0498.2_shift8 (MEIS1)
; dyads_m21 versus MA0498.2 (MEIS1); m=2/15; ncol2=7; w=7; offset=3; strand=D; shift=8; score=0.561713; --------wTGACAg
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	23727.0	8690.0	0.0	77159.0	0.0	77159.0	17224.0
c	0	0	0	0	0	0	0	0	18797.0	5575.0	1249.0	2903.0	77159.0	0.0	14864.0
g	0	0	0	0	0	0	0	0	9714.0	3174.0	77159.0	672.0	0.0	9263.0	29965.0
t	0	0	0	0	0	0	0	0	24921.0	77159.0	0.0	0.0	1155.0	3861.0	15106.0
MA0595.1_rc_shift3 (SREBF1_rc)
; dyads_m21 versus MA0595.1_rc (SREBF1_rc); m=3/15; ncol2=10; w=8; offset=-2; strand=R; shift=3; score=0.538953; ---rTGGgGTGAy--
; cor=; Ncor=
a	0	0	0	25.0	0.0	0.0	14.0	1.0	0.0	0.0	0.0	58.0	0.0	0	0
c	0	0	0	7.0	0.0	11.0	0.0	13.0	7.0	0.0	0.0	0.0	16.0	0	0
g	0	0	0	26.0	0.0	45.0	44.0	38.0	51.0	0.0	58.0	0.0	14.0	0	0
t	0	0	0	0.0	58.0	2.0	0.0	6.0	0.0	58.0	0.0	0.0	28.0	0	0
MA0775.1_shift8 (MEIS3)
; dyads_m21 versus MA0775.1 (MEIS3); m=4/15; ncol2=8; w=7; offset=3; strand=D; shift=8; score=0.520844; --------wTGACAg
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	1866.0	465.0	0.0	7165.0	53.0	7165.0	1690.0
c	0	0	0	0	0	0	0	0	60.0	383.0	6.0	20.0	7165.0	8.0	1889.0
g	0	0	0	0	0	0	0	0	1788.0	260.0	7165.0	455.0	8.0	468.0	7165.0
t	0	0	0	0	0	0	0	0	3451.0	7165.0	0.0	53.0	160.0	145.0	2094.0
MA0596.1_shift3 (SREBF2)
; dyads_m21 versus MA0596.1 (SREBF2); m=5/15; ncol2=10; w=8; offset=-2; strand=D; shift=3; score=0.511814; ---rTGGgGTGAy--
; cor=; Ncor=
a	0	0	0	24.0	0.0	0.0	10.0	2.0	2.0	0.0	0.0	47.0	2.0	0	0
c	0	0	0	9.0	0.0	3.0	0.0	10.0	9.0	0.0	0.0	0.0	16.0	0	0
g	0	0	0	14.0	0.0	44.0	37.0	27.0	36.0	0.0	47.0	0.0	2.0	0	0
t	0	0	0	0.0	47.0	0.0	0.0	8.0	0.0	47.0	0.0	0.0	27.0	0	0
MA0117.2_shift2 (Mafb)
; dyads_m21 versus MA0117.2 (Mafb); m=6/15; ncol2=12; w=9; offset=-3; strand=D; shift=2; score=0.498189; --awwwTGCTGACd-
; cor=; Ncor=
a	0	0	1237.0	1263.0	1080.0	744.0	264.0	2.0	295.0	31.0	45.0	2182.0	182.0	582.0	0
c	0	0	174.0	121.0	216.0	398.0	618.0	14.0	2182.0	36.0	13.0	13.0	2182.0	138.0	0
g	0	0	326.0	159.0	182.0	429.0	31.0	2182.0	5.0	2.0	2182.0	17.0	490.0	646.0	0
t	0	0	446.0	639.0	704.0	611.0	2182.0	5.0	7.0	2182.0	170.0	13.0	273.0	816.0	0
MA0258.2_rc_shift0 (ESR2_rc)
; dyads_m21 versus MA0258.2_rc (ESR2_rc); m=7/15; ncol2=15; w=10; offset=-5; strand=R; shift=0; score=0.487462; rGGtCasksTGACCy
; cor=; Ncor=
a	4095.0	1278.0	977.0	1518.0	66.0	5133.0	1752.0	1228.0	801.0	87.0	89.0	7033.0	41.0	644.0	174.0
c	606.0	0.0	363.0	1391.0	6658.0	533.0	2173.0	1688.0	2738.0	57.0	533.0	989.0	8143.0	7170.0	2563.0
g	2708.0	5854.0	6469.0	2056.0	398.0	975.0	2510.0	3235.0	4202.0	1.0	7621.0	147.0	0.0	0.0	96.0
t	834.0	1111.0	434.0	3278.0	1121.0	1602.0	1808.0	2092.0	502.0	8098.0	0.0	74.0	59.0	429.0	5410.0
MA0774.1_shift8 (MEIS2)
; dyads_m21 versus MA0774.1 (MEIS2); m=8/15; ncol2=8; w=7; offset=3; strand=D; shift=8; score=0.485195; --------tTGACAG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	408.0	31.0	0.0	1351.0	9.0	1351.0	83.0
c	0	0	0	0	0	0	0	0	264.0	3.0	0.0	3.0	1351.0	7.0	98.0
g	0	0	0	0	0	0	0	0	314.0	40.0	1351.0	25.0	0.0	4.0	1351.0
t	0	0	0	0	0	0	0	0	1351.0	1351.0	0.0	62.0	5.0	0.0	67.0
MA1132.1_shift7 (JUN::JUNB)
; dyads_m21 versus MA1132.1 (JUN::JUNB); m=9/15; ncol2=10; w=8; offset=2; strand=D; shift=7; score=0.473536; -------kaTGACkC
; cor=; Ncor=
a	0	0	0	0	0	0	0	203.0	627.0	11.0	10.0	944.0	27.0	58.0	161.0
c	0	0	0	0	0	0	0	128.0	134.0	10.0	21.0	10.0	826.0	24.0	707.0
g	0	0	0	0	0	0	0	408.0	189.0	34.0	921.0	28.0	115.0	353.0	10.0
t	0	0	0	0	0	0	0	261.0	50.0	946.0	47.0	18.0	33.0	565.0	122.0
MA0513.1_rc_shift6 (SMAD2::SMAD3::SMAD4_rc)
; dyads_m21 versus MA0513.1_rc (SMAD2::SMAD3::SMAD4_rc); m=10/15; ncol2=13; w=9; offset=1; strand=R; shift=6; score=0.47072; ------agGTGmsAG
; cor=; Ncor=
a	0	0	0	0	0	0	540.0	152.0	0.0	97.0	0.0	283.0	23.0	899.0	0.0
c	0	0	0	0	0	0	35.0	47.0	133.0	18.0	3.0	280.0	539.0	0.0	0.0
g	0	0	0	0	0	0	214.0	583.0	736.0	19.0	896.0	125.0	231.0	0.0	899.0
t	0	0	0	0	0	0	110.0	117.0	30.0	765.0	0.0	211.0	106.0	0.0	0.0
MA0160.1_rc_shift8 (NR4A2_rc)
; dyads_m21 versus MA0160.1_rc (NR4A2_rc); m=11/15; ncol2=8; w=7; offset=3; strand=R; shift=8; score=0.467687; --------gTGACCT
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0.0	0.0	1.0	10.0	0.0	1.0	0.0
c	0	0	0	0	0	0	0	0	2.0	0.0	0.0	0.0	11.0	13.0	1.0
g	0	0	0	0	0	0	0	0	8.0	0.0	13.0	2.0	0.0	0.0	0.0
t	0	0	0	0	0	0	0	0	3.0	14.0	0.0	2.0	3.0	0.0	13.0
MA0842.2_shift1 (NRL)
; dyads_m21 versus MA0842.2 (NRL); m=12/15; ncol2=13; w=9; offset=-4; strand=D; shift=1; score=0.455142; -aawwrTGCTGACg-
; cor=; Ncor=
a	0	14408.0	21189.0	17467.0	14033.0	6835.0	581.0	1.0	1008.0	0.0	73.0	27228.0	47.0	6001.0	0
c	0	3102.0	838.0	319.0	1314.0	5669.0	2768.0	0.0	27228.0	8.0	0.0	0.0	27228.0	1669.0	0
g	0	5588.0	3685.0	635.0	822.0	7983.0	68.0	27228.0	22.0	0.0	27228.0	4.0	559.0	14528.0	0
t	0	4130.0	6039.0	9761.0	13194.0	6741.0	27228.0	0.0	14.0	27228.0	1036.0	0.0	2394.0	5030.0	0
MA0604.1_shift8 (Atf1)
; dyads_m21 versus MA0604.1 (Atf1); m=13/15; ncol2=8; w=7; offset=3; strand=D; shift=8; score=0.453859; --------rTGACGT
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	462.0	24.0	0.0	1000.0	0.0	7.0	90.0
c	0	0	0	0	0	0	0	0	86.0	16.0	22.0	0.0	1000.0	0.0	198.0
g	0	0	0	0	0	0	0	0	387.0	0.0	803.0	0.0	0.0	993.0	0.0
t	0	0	0	0	0	0	0	0	65.0	960.0	175.0	0.0	0.0	0.0	712.0
MA1535.1_rc_shift8 (NR2C1_rc)
; dyads_m21 versus MA1535.1_rc (NR2C1_rc); m=14/15; ncol2=9; w=7; offset=3; strand=R; shift=8; score=0.434223; --------rTGACCy
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	2499.0	0.0	0.0	9622.0	0.0	297.0	55.0
c	0	0	0	0	0	0	0	0	2039.0	1716.0	321.0	271.0	9622.0	9622.0	4756.0
g	0	0	0	0	0	0	0	0	2786.0	0.0	9622.0	0.0	0.0	0.0	227.0
t	0	0	0	0	0	0	0	0	2298.0	9622.0	0.0	0.0	0.0	0.0	4866.0
MA1143.1_shift8 (FOSL1::JUND(var.2))
; dyads_m21 versus MA1143.1 (FOSL1::JUND(var.2)); m=15/15; ncol2=10; w=7; offset=3; strand=D; shift=8; score=0.408493; --------rTGACgy
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	561.0	36.0	39.0	870.0	32.0	116.0	117.0
c	0	0	0	0	0	0	0	0	75.0	50.0	101.0	45.0	835.0	59.0	262.0
g	0	0	0	0	0	0	0	0	324.0	44.0	777.0	41.0	64.0	649.0	39.0
t	0	0	0	0	0	0	0	0	40.0	870.0	82.0	44.0	68.0	176.0	582.0