One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m22/peak-motifs_dyads_m22.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m22/peak-motifs_dyads_m22_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m22_shift1 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m22_shift1 (dyads_m22dyads_m22) |
 |
|
|
; dyads_m22 (dyads_m22dyads_m22); m=0 (reference); ncol1=17; shift=1; ncol=18; -ssCCGCssccsCCGCss
; Alignment reference
a 0 68 62 15 18 32 7 61 58 45 42 63 7 15 12 11 51 62
c 0 277 189 501 513 27 528 262 194 315 317 162 517 514 37 525 273 177
g 0 149 255 34 19 494 22 172 263 141 141 265 38 31 503 27 186 254
t 0 76 64 20 20 17 13 75 55 69 70 80 8 10 18 7 60 77
|
| MA1513.1_shift0 (KLF15) |
 |
|
|
; dyads_m22 versus MA1513.1 (KLF15); m=1/1; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.460298; scCCCGCCCcs-------
; cor=; Ncor=
a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 0 0 0
c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 0 0 0
g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 0 0 0
t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0 0 0 0
|