One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m25_shift3 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m25_shift3 (dyads_m25dyads_m25)
; dyads_m25 (dyads_m25dyads_m25); m=0 (reference); ncol1=10; shift=3; ncol=17; ---ssAGTGACas---- ; Alignment reference a 0 0 0 99 75 417 0 0 1 419 0 197 87 0 0 0 0 c 0 0 0 112 191 2 0 2 0 0 419 95 106 0 0 0 0 g 0 0 0 117 107 0 419 0 418 0 0 38 168 0 0 0 0 t 0 0 0 91 46 0 0 417 0 0 0 89 58 0 0 0 0

MA0067.1_rc_shift4 (Pax2_rc)
; dyads_m25 versus MA0067.1_rc (Pax2_rc); m=1/12; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.66457; ----vmrTGAcw----- ; cor=; Ncor= a 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 c 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 g 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 t 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0

MA1110.1_shift3 (NR1H4)
; dyads_m25 versus MA1110.1 (NR1H4); m=2/12; ncol2=11; w=10; offset=0; strand=D; shift=3; score=0.646913; ---tcAATGACCyh--- ; cor=; Ncor= a 0 0 0 76.0 68.0 461.0 413.0 3.0 24.0 455.0 26.0 12.0 72.0 135.0 0 0 0 c 0 0 0 83.0 240.0 10.0 28.0 15.0 7.0 22.0 468.0 476.0 135.0 131.0 0 0 0 g 0 0 0 117.0 87.0 12.0 36.0 6.0 462.0 14.0 0.0 6.0 81.0 105.0 0 0 0 t 0 0 0 229.0 110.0 22.0 28.0 481.0 12.0 14.0 11.0 11.0 217.0 134.0 0 0 0

MA0498.2_shift6 (MEIS1)
; dyads_m25 versus MA0498.2 (MEIS1); m=3/12; ncol2=7; w=7; offset=3; strand=D; shift=6; score=0.571471; ------wTGACAg---- ; cor=; Ncor= a 0 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 c 0 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 g 0 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 t 0 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0

MA0782.2_shift1 (PKNOX1)
; dyads_m25 versus MA0782.2 (PKNOX1); m=4/12; ncol2=15; w=10; offset=-2; strand=D; shift=1; score=0.560234; -twTGAgTGACAGctr- ; cor=; Ncor= a 0 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 c 0 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 g 0 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 t 0 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0

MA0775.1_shift6 (MEIS3)
; dyads_m25 versus MA0775.1 (MEIS3); m=5/12; ncol2=8; w=7; offset=3; strand=D; shift=6; score=0.529505; ------wTGACAgs--- ; cor=; Ncor= a 0 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 c 0 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 g 0 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 t 0 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0

MA0774.1_shift6 (MEIS2)
; dyads_m25 versus MA0774.1 (MEIS2); m=6/12; ncol2=8; w=7; offset=3; strand=D; shift=6; score=0.494507; ------tTGACAGs--- ; cor=; Ncor= a 0 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 c 0 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 g 0 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 t 0 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0

MA1114.1_shift0 (PBX3)
; dyads_m25 versus MA1114.1 (PBX3); m=7/12; ncol2=17; w=10; offset=-3; strand=D; shift=0; score=0.483229; gkbTGAGTGACAGgcrs ; cor=; Ncor= a 1595.0 1510.0 1320.0 596.0 228.0 6426.0 335.0 247.0 146.0 6164.0 150.0 6091.0 369.0 884.0 1251.0 1869.0 1495.0 c 1711.0 1724.0 1849.0 225.0 227.0 125.0 788.0 199.0 242.0 108.0 6524.0 129.0 412.0 1377.0 2654.0 1619.0 1801.0 g 2192.0 1934.0 1928.0 503.0 6406.0 214.0 4929.0 285.0 6550.0 604.0 209.0 425.0 5691.0 4077.0 1591.0 2068.0 2217.0 t 1523.0 1853.0 1924.0 5697.0 160.0 256.0 969.0 6290.0 83.0 145.0 138.0 376.0 549.0 683.0 1525.0 1465.0 1508.0

MA0160.1_rc_shift6 (NR4A2_rc)
; dyads_m25 versus MA0160.1_rc (NR4A2_rc); m=8/12; ncol2=8; w=7; offset=3; strand=R; shift=6; score=0.462862; ------gTGACCTt--- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 0.0 1.0 10.0 0.0 1.0 0.0 1.0 0 0 0 c 0 0 0 0 0 0 2.0 0.0 0.0 0.0 11.0 13.0 1.0 3.0 0 0 0 g 0 0 0 0 0 0 8.0 0.0 13.0 2.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 0 0 3.0 14.0 0.0 2.0 3.0 0.0 13.0 8.0 0 0 0

MA0609.2_shift3 (CREM)
; dyads_m25 versus MA0609.2 (CREM); m=9/12; ncol2=16; w=10; offset=0; strand=D; shift=3; score=0.441633; ---gcrgTGACGTCAcy ; cor=; Ncor= a 0 0 0 3865.0 3966.0 5881.0 2936.0 559.0 434.0 15694.0 517.0 1582.0 400.0 672.0 15228.0 789.0 3757.0 c 0 0 0 4230.0 5521.0 2908.0 2159.0 730.0 1038.0 313.0 14031.0 901.0 622.0 14883.0 508.0 11146.0 4473.0 g 0 0 0 5132.0 3956.0 4474.0 11144.0 506.0 14883.0 619.0 897.0 14026.0 314.0 1039.0 730.0 2156.0 2910.0 t 0 0 0 3800.0 3584.0 3764.0 788.0 15232.0 672.0 401.0 1582.0 518.0 15691.0 433.0 561.0 2936.0 5887.0

MA1535.1_rc_shift6 (NR2C1_rc)
; dyads_m25 versus MA1535.1_rc (NR2C1_rc); m=10/12; ncol2=9; w=7; offset=3; strand=R; shift=6; score=0.435363; ------rTGACCyyk-- ; cor=; Ncor= a 0 0 0 0 0 0 2499.0 0.0 0.0 9622.0 0.0 297.0 55.0 1316.0 2225.0 0 0 c 0 0 0 0 0 0 2039.0 1716.0 321.0 271.0 9622.0 9622.0 4756.0 5587.0 1997.0 0 0 g 0 0 0 0 0 0 2786.0 0.0 9622.0 0.0 0.0 0.0 227.0 1225.0 2848.0 0 0 t 0 0 0 0 0 0 2298.0 9622.0 0.0 0.0 0.0 0.0 4866.0 4035.0 2552.0 0 0

MA0673.1_rc_shift1 (NKX2-8_rc)
; dyads_m25 versus MA0673.1_rc (NKX2-8_rc); m=11/12; ncol2=9; w=7; offset=-2; strand=R; shift=1; score=0.414619; -yTsRAGTGs------- ; cor=; Ncor= a 0 811.0 2158.0 271.0 8562.0 8562.0 110.0 516.0 2155.0 249.0 0 0 0 0 0 0 0 c 0 2593.0 696.0 4286.0 0.0 0.0 0.0 0.0 0.0 2843.0 0 0 0 0 0 0 0 g 0 1964.0 908.0 2267.0 3197.0 91.0 8562.0 595.0 8562.0 3529.0 0 0 0 0 0 0 0 t 0 3194.0 8562.0 1738.0 23.0 0.0 14.0 8562.0 70.0 1942.0 0 0 0 0 0 0 0

MA1143.1_shift6 (FOSL1::JUND(var.2))
; dyads_m25 versus MA1143.1 (FOSL1::JUND(var.2)); m=12/12; ncol2=10; w=7; offset=3; strand=D; shift=6; score=0.400562; ------rTGACgymay- ; cor=; Ncor= a 0 0 0 0 0 0 561.0 36.0 39.0 870.0 32.0 116.0 117.0 546.0 645.0 123.0 0 c 0 0 0 0 0 0 75.0 50.0 101.0 45.0 835.0 59.0 262.0 330.0 66.0 401.0 0 g 0 0 0 0 0 0 324.0 44.0 777.0 41.0 64.0 649.0 39.0 83.0 100.0 82.0 0 t 0 0 0 0 0 0 40.0 870.0 82.0 44.0 68.0 176.0 582.0 41.0 188.0 394.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m25_shift3 (dyads_m25dyads_m25)				; dyads_m25 (dyads_m25dyads_m25); m=0 (reference); ncol1=10; shift=3; ncol=17; ---ssAGTGACas---- ; Alignment reference a 0 0 0 99 75 417 0 0 1 419 0 197 87 0 0 0 0 c 0 0 0 112 191 2 0 2 0 0 419 95 106 0 0 0 0 g 0 0 0 117 107 0 419 0 418 0 0 38 168 0 0 0 0 t 0 0 0 91 46 0 0 417 0 0 0 89 58 0 0 0 0
MA0067.1_rc_shift4 (Pax2_rc)				; dyads_m25 versus MA0067.1_rc (Pax2_rc); m=1/12; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.66457; ----vmrTGAcw----- ; cor=; Ncor= a 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 c 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 g 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 t 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0
MA1110.1_shift3 (NR1H4)				; dyads_m25 versus MA1110.1 (NR1H4); m=2/12; ncol2=11; w=10; offset=0; strand=D; shift=3; score=0.646913; ---tcAATGACCyh--- ; cor=; Ncor= a 0 0 0 76.0 68.0 461.0 413.0 3.0 24.0 455.0 26.0 12.0 72.0 135.0 0 0 0 c 0 0 0 83.0 240.0 10.0 28.0 15.0 7.0 22.0 468.0 476.0 135.0 131.0 0 0 0 g 0 0 0 117.0 87.0 12.0 36.0 6.0 462.0 14.0 0.0 6.0 81.0 105.0 0 0 0 t 0 0 0 229.0 110.0 22.0 28.0 481.0 12.0 14.0 11.0 11.0 217.0 134.0 0 0 0
MA0498.2_shift6 (MEIS1)				; dyads_m25 versus MA0498.2 (MEIS1); m=3/12; ncol2=7; w=7; offset=3; strand=D; shift=6; score=0.571471; ------wTGACAg---- ; cor=; Ncor= a 0 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 c 0 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 g 0 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 t 0 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0
MA0782.2_shift1 (PKNOX1)				; dyads_m25 versus MA0782.2 (PKNOX1); m=4/12; ncol2=15; w=10; offset=-2; strand=D; shift=1; score=0.560234; -twTGAgTGACAGctr- ; cor=; Ncor= a 0 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 c 0 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 g 0 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 t 0 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0
MA0775.1_shift6 (MEIS3)				; dyads_m25 versus MA0775.1 (MEIS3); m=5/12; ncol2=8; w=7; offset=3; strand=D; shift=6; score=0.529505; ------wTGACAgs--- ; cor=; Ncor= a 0 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 c 0 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 g 0 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 t 0 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0
MA0774.1_shift6 (MEIS2)				; dyads_m25 versus MA0774.1 (MEIS2); m=6/12; ncol2=8; w=7; offset=3; strand=D; shift=6; score=0.494507; ------tTGACAGs--- ; cor=; Ncor= a 0 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 c 0 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 g 0 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 t 0 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0
MA1114.1_shift0 (PBX3)				; dyads_m25 versus MA1114.1 (PBX3); m=7/12; ncol2=17; w=10; offset=-3; strand=D; shift=0; score=0.483229; gkbTGAGTGACAGgcrs ; cor=; Ncor= a 1595.0 1510.0 1320.0 596.0 228.0 6426.0 335.0 247.0 146.0 6164.0 150.0 6091.0 369.0 884.0 1251.0 1869.0 1495.0 c 1711.0 1724.0 1849.0 225.0 227.0 125.0 788.0 199.0 242.0 108.0 6524.0 129.0 412.0 1377.0 2654.0 1619.0 1801.0 g 2192.0 1934.0 1928.0 503.0 6406.0 214.0 4929.0 285.0 6550.0 604.0 209.0 425.0 5691.0 4077.0 1591.0 2068.0 2217.0 t 1523.0 1853.0 1924.0 5697.0 160.0 256.0 969.0 6290.0 83.0 145.0 138.0 376.0 549.0 683.0 1525.0 1465.0 1508.0
MA0160.1_rc_shift6 (NR4A2_rc)				; dyads_m25 versus MA0160.1_rc (NR4A2_rc); m=8/12; ncol2=8; w=7; offset=3; strand=R; shift=6; score=0.462862; ------gTGACCTt--- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 0.0 1.0 10.0 0.0 1.0 0.0 1.0 0 0 0 c 0 0 0 0 0 0 2.0 0.0 0.0 0.0 11.0 13.0 1.0 3.0 0 0 0 g 0 0 0 0 0 0 8.0 0.0 13.0 2.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 0 0 3.0 14.0 0.0 2.0 3.0 0.0 13.0 8.0 0 0 0
MA0609.2_shift3 (CREM)				; dyads_m25 versus MA0609.2 (CREM); m=9/12; ncol2=16; w=10; offset=0; strand=D; shift=3; score=0.441633; ---gcrgTGACGTCAcy ; cor=; Ncor= a 0 0 0 3865.0 3966.0 5881.0 2936.0 559.0 434.0 15694.0 517.0 1582.0 400.0 672.0 15228.0 789.0 3757.0 c 0 0 0 4230.0 5521.0 2908.0 2159.0 730.0 1038.0 313.0 14031.0 901.0 622.0 14883.0 508.0 11146.0 4473.0 g 0 0 0 5132.0 3956.0 4474.0 11144.0 506.0 14883.0 619.0 897.0 14026.0 314.0 1039.0 730.0 2156.0 2910.0 t 0 0 0 3800.0 3584.0 3764.0 788.0 15232.0 672.0 401.0 1582.0 518.0 15691.0 433.0 561.0 2936.0 5887.0
MA1535.1_rc_shift6 (NR2C1_rc)				; dyads_m25 versus MA1535.1_rc (NR2C1_rc); m=10/12; ncol2=9; w=7; offset=3; strand=R; shift=6; score=0.435363; ------rTGACCyyk-- ; cor=; Ncor= a 0 0 0 0 0 0 2499.0 0.0 0.0 9622.0 0.0 297.0 55.0 1316.0 2225.0 0 0 c 0 0 0 0 0 0 2039.0 1716.0 321.0 271.0 9622.0 9622.0 4756.0 5587.0 1997.0 0 0 g 0 0 0 0 0 0 2786.0 0.0 9622.0 0.0 0.0 0.0 227.0 1225.0 2848.0 0 0 t 0 0 0 0 0 0 2298.0 9622.0 0.0 0.0 0.0 0.0 4866.0 4035.0 2552.0 0 0
MA0673.1_rc_shift1 (NKX2-8_rc)				; dyads_m25 versus MA0673.1_rc (NKX2-8_rc); m=11/12; ncol2=9; w=7; offset=-2; strand=R; shift=1; score=0.414619; -yTsRAGTGs------- ; cor=; Ncor= a 0 811.0 2158.0 271.0 8562.0 8562.0 110.0 516.0 2155.0 249.0 0 0 0 0 0 0 0 c 0 2593.0 696.0 4286.0 0.0 0.0 0.0 0.0 0.0 2843.0 0 0 0 0 0 0 0 g 0 1964.0 908.0 2267.0 3197.0 91.0 8562.0 595.0 8562.0 3529.0 0 0 0 0 0 0 0 t 0 3194.0 8562.0 1738.0 23.0 0.0 14.0 8562.0 70.0 1942.0 0 0 0 0 0 0 0
MA1143.1_shift6 (FOSL1::JUND(var.2))				; dyads_m25 versus MA1143.1 (FOSL1::JUND(var.2)); m=12/12; ncol2=10; w=7; offset=3; strand=D; shift=6; score=0.400562; ------rTGACgymay- ; cor=; Ncor= a 0 0 0 0 0 0 561.0 36.0 39.0 870.0 32.0 116.0 117.0 546.0 645.0 123.0 0 c 0 0 0 0 0 0 75.0 50.0 101.0 45.0 835.0 59.0 262.0 330.0 66.0 401.0 0 g 0 0 0 0 0 0 324.0 44.0 777.0 41.0 64.0 649.0 39.0 83.0 100.0 82.0 0 t 0 0 0 0 0 0 40.0 870.0 82.0 44.0 68.0 176.0 582.0 41.0 188.0 394.0 0