Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26.tf
		file1	1	10	672
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m26 MA1566.1 dyads_m26dyads_m26 TBX3 0.869 0.869 10 10 10 10 1.0000 1.0000 1.0000 R 0
dyads_m26 MA1567.1 dyads_m26dyads_m26 TBX6 0.834 0.834 10 10 10 10 1.0000 1.0000 1.0000 R 0
dyads_m26 MA1511.1 dyads_m26dyads_m26 KLF10 0.887 0.806 10 11 10 11 0.9091 1.0000 0.9091 D 0
dyads_m26 MA0690.1 dyads_m26dyads_m26 TBX21 0.792 0.792 10 10 10 10 1.0000 1.0000 1.0000 R 0
dyads_m26 MA0493.1 dyads_m26dyads_m26 Klf1 0.855 0.777 10 11 10 11 0.9091 1.0000 0.9091 D -1
dyads_m26 MA0689.1 dyads_m26dyads_m26 TBX20 0.798 0.726 10 11 10 11 0.9091 1.0000 0.9091 R -1
dyads_m26 MA1517.1 dyads_m26dyads_m26 KLF6 0.790 0.718 10 11 10 11 0.9091 1.0000 0.9091 D -1
dyads_m26 MA1512.1 dyads_m26dyads_m26 KLF11 0.789 0.717 10 11 10 11 0.9091 1.0000 0.9091 D 0
dyads_m26 MA1515.1 dyads_m26dyads_m26 KLF2 0.786 0.715 10 11 10 11 0.9091 1.0000 0.9091 D -1
dyads_m26 MA0688.1 dyads_m26dyads_m26 TBX2 0.784 0.713 10 11 10 11 0.9091 1.0000 0.9091 R -1
dyads_m26 MA0599.1 dyads_m26dyads_m26 KLF5 0.704 0.704 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m26 MA0741.1 dyads_m26dyads_m26 KLF16 0.762 0.693 10 11 10 11 0.9091 1.0000 0.9091 D 0
dyads_m26 MA0807.1 dyads_m26dyads_m26 TBX5 0.864 0.691 10 8 8 10 0.8000 0.8000 1.0000 R 1
dyads_m26 MA0801.1 dyads_m26dyads_m26 MGA 0.862 0.690 10 8 8 10 0.8000 0.8000 1.0000 R 1
dyads_m26 MA0803.1 dyads_m26dyads_m26 TBX15 0.859 0.687 10 8 8 10 0.8000 0.8000 1.0000 R 1
dyads_m26 MA0805.1 dyads_m26dyads_m26 TBX1 0.849 0.679 10 8 8 10 0.8000 0.8000 1.0000 R 1
dyads_m26 MA1565.1 dyads_m26dyads_m26 TBX18 0.806 0.672 10 12 10 12 0.8333 1.0000 0.8333 R -1
dyads_m26 MA0806.1 dyads_m26dyads_m26 TBX4 0.832 0.666 10 8 8 10 0.8000 0.8000 1.0000 R 1
dyads_m26 MA0802.1 dyads_m26dyads_m26 TBR1 0.784 0.642 10 10 9 11 0.8182 0.9000 0.9000 R -1
dyads_m26 MA0039.4 dyads_m26dyads_m26 KLF4 0.742 0.618 10 12 10 12 0.8333 1.0000 0.8333 D -1
dyads_m26 MA0747.1 dyads_m26dyads_m26 SP8 0.741 0.618 10 12 10 12 0.8333 1.0000 0.8333 D 0
dyads_m26 MA0800.1 dyads_m26dyads_m26 EOMES 0.797 0.613 10 13 10 13 0.7692 1.0000 0.7692 R -3
dyads_m26 MA1564.1 dyads_m26dyads_m26 SP9 0.721 0.601 10 12 10 12 0.8333 1.0000 0.8333 D 0
dyads_m26 MA0746.2 dyads_m26dyads_m26 SP3 0.717 0.551 10 13 10 13 0.7692 1.0000 0.7692 D -1
dyads_m26 MA1621.1 dyads_m26dyads_m26 Rbpjl 0.763 0.545 10 14 10 14 0.7143 1.0000 0.7143 D 0
dyads_m26 MA1107.2 dyads_m26dyads_m26 KLF9 0.858 0.537 10 16 10 16 0.6250 1.0000 0.6250 D -2
dyads_m26 MA1620.1 dyads_m26dyads_m26 Ptf1a(var.3) 0.771 0.534 10 12 9 13 0.6923 0.9000 0.7500 D 1
dyads_m26 MA0740.1 dyads_m26dyads_m26 KLF14 0.700 0.500 10 14 10 14 0.7143 1.0000 0.7143 D -1
dyads_m26 MA0742.1 dyads_m26dyads_m26 Klf12 0.719 0.479 10 15 10 15 0.6667 1.0000 0.6667 D -1
dyads_m26 MA1558.1 dyads_m26dyads_m26 SNAI1 0.717 0.478 10 10 8 12 0.6667 0.8000 0.8000 R 2
dyads_m26 MA1155.1 dyads_m26dyads_m26 ZSCAN4 0.707 0.472 10 15 10 15 0.6667 1.0000 0.6667 D 0
dyads_m26 MA0103.3 dyads_m26dyads_m26 ZEB1 0.719 0.443 10 11 8 13 0.6154 0.8000 0.7273 D 2
dyads_m26 MA0522.3 dyads_m26dyads_m26 TCF3 0.712 0.438 10 11 8 13 0.6154 0.8000 0.7273 D 2
dyads_m26 MA1648.1 dyads_m26dyads_m26 TCF12(var.2) 0.703 0.433 10 11 8 13 0.6154 0.8000 0.7273 D 2 
 Host name	pedagogix
 Job started	2020-04-14.000417
 Job done	2020-04-14.000452
 Seconds	4.66
	user	4.66
	system	0.57
	cuser	26.5
;	csystem	1.61