One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m27/peak-motifs_dyads_m27.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m27/peak-motifs_dyads_m27_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m27_shift2 ; 11 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m27_shift2 (dyads_m27dyads_m27)     
; dyads_m27 (dyads_m27dyads_m27); m=0 (reference); ncol1=10; shift=2; ncol=17; --yvCATTCCwk-----
; Alignment reference
a	0	0	94	181	2	642	0	0	0	0	273	118	0	0	0	0	0
c	0	0	180	216	638	0	0	0	643	642	141	131	0	0	0	0	0
g	0	0	138	161	1	1	0	0	0	1	39	184	0	0	0	0	0
t	0	0	231	85	2	0	643	643	0	0	190	210	0	0	0	0	0
MA0809.2_shift1 (TEAD4) 
; dyads_m27 versus MA0809.2 (TEAD4); m=1/10; ncol2=12; w=10; offset=-1; strand=D; shift=1; score=0.772861; -ycACATTCCAgs----
; cor=; Ncor=
a	0	18932.0	17306.0	61263.0	7543.0	74797.0	965.0	2673.0	1366.0	1314.0	61802.0	16617.0	19272.0	0	0	0	0
c	0	22343.0	26577.0	2414.0	66205.0	1218.0	1129.0	1176.0	72555.0	75066.0	3874.0	13864.0	20301.0	0	0	0	0
g	0	15111.0	15427.0	11265.0	3295.0	569.0	1025.0	2100.0	1580.0	212.0	1191.0	32220.0	22630.0	0	0	0	0
t	0	21700.0	18776.0	3144.0	1043.0	1502.0	74967.0	72137.0	2585.0	1494.0	11219.0	15385.0	15883.0	0	0	0	0
MA0808.1_shift3 (TEAD3) 
; dyads_m27 versus MA0808.1 (TEAD3); m=2/10; ncol2=8; w=8; offset=1; strand=D; shift=3; score=0.763674; ---rCATTCCw------
; cor=; Ncor=
a	0	0	0	12530.0	2524.0	21444.0	0.0	4566.0	0.0	0.0	21444.0	0	0	0	0	0	0
c	0	0	0	66.0	18920.0	0.0	0.0	23.0	21444.0	21444.0	1039.0	0	0	0	0	0	0
g	0	0	0	8913.0	441.0	0.0	0.0	969.0	0.0	0.0	8654.0	0	0	0	0	0	0
t	0	0	0	1109.0	0.0	0.0	21444.0	16878.0	0.0	4.0	13663.0	0	0	0	0	0	0
MA1121.1_shift1 (TEAD2) 
; dyads_m27 versus MA1121.1 (TEAD2); m=3/10; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.724539; -hcACATTCCwgsc---
; cor=; Ncor=
a	0	137.0	88.0	441.0	39.0	517.0	2.0	15.0	8.0	8.0	263.0	112.0	111.0	109.0	0	0	0
c	0	145.0	238.0	17.0	478.0	5.0	10.0	8.0	500.0	513.0	60.0	111.0	172.0	221.0	0	0	0
g	0	112.0	81.0	70.0	14.0	11.0	6.0	9.0	10.0	3.0	56.0	207.0	147.0	117.0	0	0	0
t	0	148.0	135.0	14.0	11.0	9.0	524.0	510.0	24.0	18.0	163.0	112.0	112.0	95.0	0	0	0
MA0090.3_shift1 (TEAD1) 
; dyads_m27 versus MA0090.3 (TEAD1); m=4/10; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.695435; -hyACATTCCAGsm---
; cor=; Ncor=
a	0	17689.0	16651.0	58030.0	6096.0	68106.0	535.0	4976.0	1348.0	702.0	57190.0	9124.0	13252.0	19194.0	0	0	0
c	0	19272.0	22059.0	1248.0	61276.0	646.0	700.0	622.0	66953.0	67635.0	1729.0	6215.0	20002.0	21358.0	0	0	0
g	0	14429.0	12053.0	9179.0	1923.0	946.0	646.0	1210.0	765.0	374.0	2051.0	47856.0	26525.0	16344.0	0	0	0
t	0	19008.0	19635.0	1941.0	1103.0	700.0	68517.0	63590.0	1332.0	1687.0	9428.0	7203.0	10619.0	13502.0	0	0	0
MA0624.1_shift3 (NFATC1) 
; dyads_m27 versus MA0624.1 (NFATC1); m=5/10; ncol2=10; w=9; offset=1; strand=D; shift=3; score=0.579635; ---wttTTCCryt----
; cor=; Ncor=
a	0	0	0	383.0	226.0	158.0	19.0	21.0	14.0	9.0	516.0	230.0	230.0	0	0	0	0
c	0	0	0	134.0	193.0	60.0	35.0	29.0	971.0	967.0	45.0	262.0	227.0	0	0	0	0
g	0	0	0	167.0	189.0	122.0	7.0	15.0	8.0	5.0	357.0	126.0	194.0	0	0	0	0
t	0	0	0	316.0	392.0	660.0	939.0	935.0	7.0	18.0	83.0	383.0	349.0	0	0	0	0
MA1117.1_shift3 (RELB) 
; dyads_m27 versus MA1117.1 (RELB); m=6/10; ncol2=11; w=9; offset=1; strand=D; shift=3; score=0.534198; ---gaATTCCCCks---
; cor=; Ncor=
a	0	0	0	796.0	1231.0	2833.0	210.0	90.0	144.0	92.0	146.0	79.0	796.0	711.0	0	0	0
c	0	0	0	414.0	561.0	127.0	107.0	103.0	2928.0	3098.0	3013.0	3035.0	628.0	921.0	0	0	0
g	0	0	0	1575.0	794.0	157.0	159.0	53.0	40.0	28.0	58.0	107.0	984.0	996.0	0	0	0
t	0	0	0	505.0	704.0	173.0	2814.0	3044.0	178.0	72.0	73.0	69.0	882.0	662.0	0	0	0
MA0101.1_shift0 (REL) 
; dyads_m27 versus MA0101.1 (REL); m=7/10; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=0.470165; sGGrmwTTCC-------
; cor=; Ncor=
a	0.0	0.0	1.0	5.0	6.0	5.0	1.0	2.0	0.0	1.0	0	0	0	0	0	0	0
c	5.0	1.0	0.0	1.0	5.0	1.0	0.0	0.0	15.0	16.0	0	0	0	0	0	0	0
g	8.0	15.0	15.0	9.0	3.0	1.0	0.0	0.0	0.0	0.0	0	0	0	0	0	0	0
t	4.0	1.0	1.0	2.0	3.0	10.0	16.0	15.0	2.0	0.0	0	0	0	0	0	0	0
MA0752.1_shift2 (ZNF410) 
; dyads_m27 versus MA0752.1 (ZNF410); m=8/10; ncol2=17; w=10; offset=0; strand=D; shift=2; score=0.414761; --tmCATCCCATAATAh
; cor=; Ncor=
a	0	0	661.0	1715.0	1.0	3985.0	50.0	69.0	12.0	0.0	3985.0	0.0	3987.0	3983.0	4.0	3930.0	1069.0
c	0	0	700.0	1872.0	3641.0	2.0	33.0	3949.0	3986.0	3986.0	5.0	9.0	8.0	2.0	6.0	17.0	1285.0
g	0	0	950.0	399.0	0.0	1.0	124.0	1.0	0.0	1.0	1.0	0.0	0.0	3.0	0.0	43.0	619.0
t	0	0	1677.0	2.0	370.0	4.0	3827.0	4.0	0.0	0.0	2.0	3987.0	0.0	1.0	3984.0	24.0	1015.0
MA0144.2_rc_shift5 (STAT3_rc) 
; dyads_m27 versus MA0144.2_rc (STAT3_rc); m=9/10; ncol2=11; w=7; offset=3; strand=R; shift=5; score=0.40378; -----yTTCCmrGMAr-
; cor=; Ncor=
a	0	0	0	0	0	4768.0	0.0	0.0	402.0	0.0	6472.0	13000.0	1029.0	15174.0	20912.0	7312.0	0
c	0	0	0	0	0	6579.0	0.0	0.0	18686.0	20046.0	11456.0	0.0	0.0	5850.0	0.0	3801.0	0
g	0	0	0	0	0	962.0	0.0	0.0	0.0	0.0	0.0	7780.0	19585.0	346.0	0.0	8571.0	0
t	0	0	0	0	0	9311.0	21620.0	21620.0	2532.0	1574.0	3692.0	840.0	1006.0	250.0	708.0	1936.0	0
MA0137.3_rc_shift5 (STAT1_rc) 
; dyads_m27 versus MA0137.3_rc (STAT1_rc); m=10/10; ncol2=11; w=7; offset=3; strand=R; shift=5; score=0.40034; -----tTTCCyrGAAa-
; cor=; Ncor=
a	0	0	0	0	0	714.0	0.0	0.0	167.0	0.0	253.0	1511.0	0.0	3513.0	3577.0	1747.0	0
c	0	0	0	0	0	725.0	0.0	9.0	3426.0	3466.0	1637.0	0.0	6.0	110.0	0.0	785.0	0
g	0	0	0	0	0	311.0	5.0	0.0	7.0	0.0	0.0	2009.0	3262.0	6.0	52.0	731.0	0
t	0	0	0	0	0	1879.0	3624.0	3620.0	29.0	163.0	1739.0	109.0	361.0	0.0	0.0	366.0	0