One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m28/peak-motifs_dyads_m28.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m28/peak-motifs_dyads_m28_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m28_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m28_shift0 (dyads_m28dyads_m28) |
 |
|
|
; dyads_m28 (dyads_m28dyads_m28); m=0 (reference); ncol1=11; shift=0; ncol=12; skGCCTGGChs-
; Alignment reference
a 83 111 0 0 0 0 0 0 0 119 79 0
c 174 68 0 454 453 18 9 0 454 151 132 0
g 122 147 454 0 1 17 445 454 0 66 147 0
t 75 128 0 0 0 419 0 0 0 118 96 0
|
| MA0671.1_rc_shift3 (NFIX_rc) |
 |
|
|
; dyads_m28 versus MA0671.1_rc (NFIX_rc); m=1/1; ncol2=9; w=8; offset=3; strand=R; shift=3; score=0.502913; ---byTGGCacs
; cor=; Ncor=
a 0 0 0 6439.0 2399.0 110.0 0.0 29.0 2539.0 32864.0 8043.0 7378.0
c 0 0 0 9135.0 12688.0 180.0 0.0 3257.0 32864.0 5911.0 10855.0 8725.0
g 0 0 0 9039.0 1356.0 2230.0 32864.0 32864.0 186.0 9695.0 6134.0 8810.0
t 0 0 0 8251.0 32864.0 32864.0 0.0 3.0 132.0 11279.0 7832.0 7951.0
|