One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m30/peak-motifs_dyads_m30.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m30/peak-motifs_dyads_m30_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m30_shift1 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m30_shift1 (dyads_m30dyads_m30) |
 |
|
|
; dyads_m30 (dyads_m30dyads_m30); m=0 (reference); ncol1=20; shift=1; ncol=21; -ssCCGCsscsscssCCGCss
; Alignment reference
a 0 63 54 8 16 21 14 66 68 49 55 64 35 64 60 12 22 11 9 61 48
c 0 256 195 490 486 31 504 265 192 291 267 186 318 268 179 491 483 24 507 244 208
g 0 146 241 42 25 482 20 139 234 137 150 238 127 143 252 30 34 496 23 173 231
t 0 85 60 10 23 16 12 80 56 73 78 62 70 75 59 17 11 19 11 72 63
|
| MA1513.1_shift0 (KLF15) |
 |
|
|
; dyads_m30 versus MA1513.1 (KLF15); m=1/1; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.40338; scCCCGCCCcs----------
; cor=; Ncor=
a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 0 0 0 0 0 0
c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 0 0 0 0 0 0
g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 0 0 0 0 0 0
t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0 0 0 0 0 0 0
|