Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31.tf
		file1	1	15	355
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m31 MA1485.1 dyads_m31dyads_m31 FERD3L 0.794 0.741 15 14 14 15 0.9333 0.9333 1.0000 D 0
dyads_m31 MA0832.1 dyads_m31dyads_m31 Tcf21 0.774 0.723 15 14 14 15 0.9333 0.9333 1.0000 R 0
dyads_m31 MA0499.2 dyads_m31dyads_m31 MYOD1 0.812 0.704 15 13 13 15 0.8667 0.8667 1.0000 D 1
dyads_m31 MA1641.1 dyads_m31dyads_m31 MYF5 0.838 0.671 15 12 12 15 0.8000 0.8000 1.0000 R 1
dyads_m31 MA1621.1 dyads_m31dyads_m31 Rbpjl 0.713 0.665 15 14 14 15 0.9333 0.9333 1.0000 D 0
dyads_m31 MA1619.1 dyads_m31dyads_m31 Ptf1a(var.2) 0.830 0.664 15 12 12 15 0.8000 0.8000 1.0000 D 1
dyads_m31 MA0521.1 dyads_m31dyads_m31 Tcf12 0.902 0.661 15 11 11 15 0.7333 0.7333 1.0000 R 1
dyads_m31 MA1109.1 dyads_m31dyads_m31 NEUROD1 0.761 0.659 15 13 13 15 0.8667 0.8667 1.0000 R 0
dyads_m31 MA0500.2 dyads_m31dyads_m31 MYOG 0.808 0.647 15 12 12 15 0.8000 0.8000 1.0000 D 1
dyads_m31 MA1123.2 dyads_m31dyads_m31 TWIST1 0.742 0.643 15 13 13 15 0.8667 0.8667 1.0000 D 0
dyads_m31 MA1642.1 dyads_m31dyads_m31 NEUROG2(var.2) 0.727 0.630 15 13 13 15 0.8667 0.8667 1.0000 R 1
dyads_m31 MA1618.1 dyads_m31dyads_m31 Ptf1a 0.725 0.629 15 13 13 15 0.8667 0.8667 1.0000 R 0
dyads_m31 MA0745.2 dyads_m31dyads_m31 SNAI2 0.714 0.619 15 13 13 15 0.8667 0.8667 1.0000 D 1
dyads_m31 MA0796.1 dyads_m31dyads_m31 TGIF1 0.755 0.604 15 12 12 15 0.8000 0.8000 1.0000 R 1
dyads_m31 MA1467.1 dyads_m31dyads_m31 ATOH1(var.2) 0.900 0.600 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m31 MA1571.1 dyads_m31dyads_m31 TGIF2LX 0.746 0.597 15 12 12 15 0.8000 0.8000 1.0000 R 1
dyads_m31 MA0797.1 dyads_m31dyads_m31 TGIF2 0.740 0.592 15 12 12 15 0.8000 0.8000 1.0000 R 1
dyads_m31 MA1572.1 dyads_m31dyads_m31 TGIF2LY 0.731 0.585 15 12 12 15 0.8000 0.8000 1.0000 D 1
dyads_m31 MA1472.1 dyads_m31dyads_m31 BHLHA15(var.2) 0.866 0.578 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m31 MA0091.1 dyads_m31dyads_m31 TAL1::TCF3 0.705 0.564 15 12 12 15 0.8000 0.8000 1.0000 D 0
dyads_m31 MA0783.1 dyads_m31dyads_m31 PKNOX2 0.703 0.563 15 12 12 15 0.8000 0.8000 1.0000 R 1
dyads_m31 MA1635.1 dyads_m31dyads_m31 BHLHE22(var.2) 0.831 0.554 15 10 10 15 0.6667 0.6667 1.0000 R 2
dyads_m31 MA0816.1 dyads_m31dyads_m31 Ascl2 0.808 0.539 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m31 MA0665.1 dyads_m31dyads_m31 MSC 0.804 0.536 15 10 10 15 0.6667 0.6667 1.0000 R 2
dyads_m31 MA1100.2 dyads_m31dyads_m31 ASCL1 0.794 0.529 15 10 10 15 0.6667 0.6667 1.0000 R 2
dyads_m31 MA0691.1 dyads_m31dyads_m31 TFAP4 0.792 0.528 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m31 MA0667.1 dyads_m31dyads_m31 MYF6 0.773 0.516 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m31 MA0820.1 dyads_m31dyads_m31 FIGLA 0.757 0.504 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m31 MA0774.1 dyads_m31dyads_m31 MEIS2 0.905 0.483 15 8 8 15 0.5333 0.5333 1.0000 R 6
dyads_m31 MA0048.2 dyads_m31dyads_m31 NHLH1 0.711 0.474 15 10 10 15 0.6667 0.6667 1.0000 D 2
dyads_m31 MA0775.1 dyads_m31dyads_m31 MEIS3 0.871 0.465 15 8 8 15 0.5333 0.5333 1.0000 R 6
dyads_m31 MA0498.2 dyads_m31dyads_m31 MEIS1 0.911 0.425 15 7 7 15 0.4667 0.4667 1.0000 R 7
dyads_m31 MA0782.2 dyads_m31dyads_m31 PKNOX1 0.734 0.425 15 15 11 19 0.5789 0.7333 0.7333 R 4 
 Host name	pedagogix
 Job started	2020-04-14.000517
 Job done	2020-04-14.000551
 Seconds	4.98
	user	4.98
	system	0.57
	cuser	26.53
;	csystem	1.66