One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m31/peak-motifs_dyads_m31_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m31_shift0 ; 34 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m31_shift0 (dyads_m31dyads_m31)     
; dyads_m31 (dyads_m31dyads_m31); m=0 (reference); ncol1=15; shift=0; ncol=19; rsaCCAGCTGTCasc----
; Alignment reference
a	94	52	215	24	0	347	3	5	2	2	2	3	234	47	75	0	0	0	0
c	87	144	78	257	355	1	14	349	0	1	12	344	46	128	124	0	0	0	0
g	99	91	36	69	0	2	334	0	0	351	7	4	32	100	82	0	0	0	0
t	75	68	26	5	0	5	4	1	353	1	334	4	43	80	74	0	0	0	0
MA1485.1_shift0 (FERD3L) 
; dyads_m31 versus MA1485.1 (FERD3L); m=1/33; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.740729; GyrmCAGCTGTyAC-----
; cor=; Ncor=
a	2158.0	450.0	14384.0	15390.0	36.0	29605.0	0.0	3649.0	81.0	0.0	1268.0	103.0	29605.0	0.0	0	0	0	0	0
c	68.0	20049.0	2443.0	9363.0	29605.0	126.0	841.0	29605.0	129.0	0.0	3878.0	8664.0	809.0	29605.0	0	0	0	0	0
g	29605.0	348.0	12703.0	3142.0	0.0	118.0	29605.0	471.0	210.0	29605.0	3395.0	5920.0	9815.0	0.0	0	0	0	0	0
t	225.0	9557.0	74.0	1710.0	0.0	144.0	4691.0	0.0	29605.0	0.0	21065.0	14919.0	958.0	48.0	0	0	0	0	0
MA0832.1_rc_shift0 (Tcf21_rc) 
; dyads_m31 versus MA0832.1_rc (Tcf21_rc); m=2/33; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.722789; ryAACAGCTGTTry-----
; cor=; Ncor=
a	60.0	19.0	171.0	171.0	0.0	171.0	1.0	2.0	0.0	0.0	0.0	3.0	46.0	17.0	0	0	0	0	0
c	32.0	80.0	0.0	20.0	171.0	0.0	1.0	171.0	0.0	0.0	0.0	23.0	22.0	70.0	0	0	0	0	0
g	49.0	23.0	23.0	4.0	0.0	0.0	171.0	0.0	1.0	171.0	10.0	1.0	76.0	29.0	0	0	0	0	0
t	30.0	50.0	5.0	0.0	0.0	0.0	0.0	0.0	171.0	0.0	171.0	171.0	28.0	55.0	0	0	0	0	0
MA0499.2_shift1 (MYOD1) 
; dyads_m31 versus MA0499.2 (MYOD1); m=3/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.703705; -cwgCACCTGTymy-----
; cor=; Ncor=
a	0	7175.0	9462.0	4549.0	349.0	32281.0	463.0	534.0	241.0	208.0	402.0	1808.0	9462.0	5687.0	0	0	0	0	0
c	0	11279.0	7103.0	5622.0	33328.0	583.0	25275.0	32504.0	563.0	386.0	2555.0	19052.0	10485.0	11760.0	0	0	0	0	0
g	0	8118.0	8444.0	21884.0	354.0	849.0	7336.0	932.0	366.0	33468.0	1699.0	4440.0	6202.0	7495.0	0	0	0	0	0
t	0	7728.0	9291.0	2245.0	269.0	587.0	1226.0	330.0	33130.0	238.0	29644.0	9000.0	8151.0	9358.0	0	0	0	0	0
MA1641.1_rc_shift1 (MYF5_rc) 
; dyads_m31 versus MA1641.1_rc (MYF5_rc); m=4/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.670741; -gvaCAGCTGtbc------
; cor=; Ncor=
a	0	2697.0	3507.0	7489.0	95.0	10966.0	100.0	222.0	129.0	43.0	578.0	1572.0	2554.0	0	0	0	0	0	0
c	0	2701.0	2985.0	1368.0	10912.0	47.0	230.0	10658.0	69.0	161.0	1774.0	3145.0	3258.0	0	0	0	0	0	0
g	0	3258.0	3146.0	1775.0	161.0	68.0	10657.0	230.0	47.0	10911.0	1368.0	2986.0	2700.0	0	0	0	0	0	0
t	0	2554.0	1572.0	578.0	42.0	129.0	223.0	100.0	10965.0	95.0	7490.0	3507.0	2698.0	0	0	0	0	0	0
MA1621.1_shift0 (Rbpjl) 
; dyads_m31 versus MA1621.1 (Rbpjl); m=5/33; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.665242; svmaCACCTGtsyc-----
; cor=; Ncor=
a	2006.0	2466.0	3369.0	6005.0	139.0	9386.0	84.0	234.0	63.0	102.0	569.0	1539.0	2273.0	2082.0	0	0	0	0	0
c	2881.0	2427.0	3117.0	1373.0	9273.0	70.0	8533.0	9005.0	144.0	131.0	1718.0	3247.0	2884.0	3003.0	0	0	0	0	0
g	2476.0	2549.0	1802.0	1492.0	103.0	110.0	672.0	317.0	132.0	9295.0	1581.0	2687.0	1958.0	2281.0	0	0	0	0	0
t	2289.0	2210.0	1364.0	782.0	137.0	86.0	363.0	96.0	9313.0	124.0	5784.0	2179.0	2537.0	2286.0	0	0	0	0	0
MA1619.1_shift1 (Ptf1a(var.2)) 
; dyads_m31 versus MA1619.1 (Ptf1a(var.2)); m=6/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.663983; -rmaCAGCTGtky------
; cor=; Ncor=
a	0	1869.0	1978.0	4346.0	49.0	7119.0	34.0	224.0	26.0	27.0	535.0	1221.0	1602.0	0	0	0	0	0	0
c	0	1803.0	2430.0	1070.0	7149.0	41.0	307.0	6697.0	66.0	27.0	1312.0	1632.0	1977.0	0	0	0	0	0	0
g	0	1974.0	1629.0	1308.0	28.0	65.0	6689.0	299.0	40.0	7150.0	1065.0	2426.0	1803.0	0	0	0	0	0	0
t	0	1607.0	1216.0	529.0	27.0	28.0	223.0	33.0	7121.0	49.0	4341.0	1974.0	1871.0	0	0	0	0	0	0
MA0521.1_rc_shift1 (Tcf12_rc) 
; dyads_m31 versus MA0521.1_rc (Tcf12_rc); m=7/33; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.661301; -cwsCAGCTGYy-------
; cor=; Ncor=
a	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0	0	0	0	0	0
c	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0	0	0	0	0	0
g	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0	0	0	0	0	0
t	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0	0	0	0	0	0
MA1109.1_rc_shift0 (NEUROD1_rc) 
; dyads_m31 versus MA1109.1_rc (NEUROD1_rc); m=8/33; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.659322; syrCCATCTGtyc------
; cor=; Ncor=
a	525.0	451.0	580.0	168.0	31.0	2157.0	21.0	90.0	18.0	12.0	47.0	298.0	566.0	0	0	0	0	0	0
c	628.0	599.0	418.0	1962.0	2231.0	19.0	77.0	2152.0	16.0	13.0	494.0	906.0	726.0	0	0	0	0	0	0
g	591.0	540.0	911.0	93.0	7.0	51.0	150.0	24.0	7.0	2240.0	452.0	323.0	429.0	0	0	0	0	0	0
t	538.0	692.0	373.0	59.0	13.0	55.0	2034.0	16.0	2241.0	17.0	1289.0	755.0	561.0	0	0	0	0	0	0
MA0500.2_shift1 (MYOG) 
; dyads_m31 versus MA0500.2 (MYOG); m=9/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.646647; -sarCAGCTGyts------
; cor=; Ncor=
a	0	5310.0	8428.0	7159.0	86.0	21782.0	95.0	167.0	163.0	182.0	1667.0	4667.0	5018.0	0	0	0	0	0	0
c	0	6381.0	3754.0	2730.0	21988.0	176.0	130.0	21964.0	238.0	102.0	10792.0	5497.0	5660.0	0	0	0	0	0	0
g	0	5596.0	5483.0	10790.0	101.0	236.0	21963.0	131.0	179.0	21985.0	2706.0	3718.0	6369.0	0	0	0	0	0	0
t	0	5070.0	4692.0	1678.0	182.0	163.0	169.0	95.0	21777.0	88.0	7192.0	8475.0	5310.0	0	0	0	0	0	0
MA1123.2_shift0 (TWIST1) 
; dyads_m31 versus MA1123.2 (TWIST1); m=10/33; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.642996; awwCCAGATGtbt------
; cor=; Ncor=
a	8329.0	7822.0	7536.0	3733.0	377.0	26713.0	440.0	24524.0	357.0	380.0	1801.0	4070.0	6823.0	0	0	0	0	0	0
c	5761.0	5530.0	4597.0	20412.0	26665.0	136.0	1320.0	1687.0	456.0	396.0	2919.0	7402.0	6561.0	0	0	0	0	0	0
g	6485.0	5722.0	5772.0	2336.0	117.0	210.0	24166.0	908.0	288.0	25975.0	4069.0	7273.0	6213.0	0	0	0	0	0	0
t	6758.0	8259.0	9428.0	852.0	174.0	274.0	1407.0	214.0	26232.0	582.0	18544.0	8588.0	7736.0	0	0	0	0	0	0
MA1642.1_rc_shift1 (NEUROG2(var.2)_rc) 
; dyads_m31 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=11/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.629989; -brCCATCTGtyyy-----
; cor=; Ncor=
a	0	7184.0	9704.0	4904.0	484.0	32515.0	275.0	2806.0	159.0	237.0	1750.0	4721.0	8378.0	7535.0	0	0	0	0	0
c	0	8709.0	7581.0	24998.0	33422.0	323.0	418.0	30392.0	301.0	317.0	8039.0	11114.0	10123.0	10813.0	0	0	0	0	0
g	0	9034.0	10441.0	2966.0	205.0	904.0	952.0	793.0	211.0	33559.0	8154.0	6467.0	6843.0	7353.0	0	0	0	0	0
t	0	9464.0	6665.0	1523.0	280.0	649.0	32746.0	400.0	33720.0	278.0	16448.0	12089.0	9047.0	8690.0	0	0	0	0	0
MA1618.1_rc_shift0 (Ptf1a_rc) 
; dyads_m31 versus MA1618.1_rc (Ptf1a_rc); m=12/33; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.628691; dmaaCATCTGtkh------
; cor=; Ncor=
a	3622.0	3685.0	8294.0	8564.0	210.0	13973.0	148.0	653.0	106.0	172.0	726.0	2735.0	3699.0	0	0	0	0	0	0
c	3376.0	3664.0	2295.0	2854.0	13868.0	118.0	437.0	13072.0	153.0	130.0	2414.0	3568.0	3661.0	0	0	0	0	0	0
g	3689.0	3601.0	2341.0	2058.0	122.0	224.0	1724.0	466.0	118.0	14006.0	2747.0	3662.0	2989.0	0	0	0	0	0	0
t	3754.0	3491.0	1511.0	965.0	241.0	126.0	12132.0	250.0	14064.0	133.0	8554.0	4476.0	4092.0	0	0	0	0	0	0
MA0745.2_shift1 (SNAI2) 
; dyads_m31 versus MA0745.2 (SNAI2); m=13/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.618831; -aygCACCTGTmry-----
; cor=; Ncor=
a	0	14658.0	7668.0	10322.0	408.0	44963.0	112.0	246.0	78.0	179.0	814.0	12017.0	13586.0	6215.0	0	0	0	0	0
c	0	10031.0	12314.0	6393.0	44463.0	202.0	45144.0	44739.0	313.0	254.0	6467.0	18771.0	11016.0	13476.0	0	0	0	0	0
g	0	11169.0	9490.0	26742.0	323.0	424.0	326.0	487.0	196.0	45257.0	1263.0	6281.0	12297.0	8219.0	0	0	0	0	0
t	0	9958.0	16344.0	2359.0	622.0	227.0	234.0	344.0	45229.0	126.0	37272.0	8747.0	8917.0	17906.0	0	0	0	0	0
MA0796.1_rc_shift1 (TGIF1_rc) 
; dyads_m31 versus MA0796.1_rc (TGIF1_rc); m=14/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.603868; -TGACAGCTGTCA------
; cor=; Ncor=
a	0	33.0	17.0	12656.0	9.0	12775.0	12.0	963.0	4.0	7.0	0.0	4.0	13221.0	0	0	0	0	0	0
c	0	32.0	13.0	3.0	13261.0	8.0	2520.0	12673.0	22.0	5.0	20.0	13499.0	1.0	0	0	0	0	0	0
g	0	17.0	13485.0	24.0	13.0	62.0	10562.0	20.0	5.0	13304.0	3.0	8.0	19.0	0	0	0	0	0	0
t	0	9034.0	36.0	45.0	11.0	1.0	452.0	14.0	8861.0	1.0	8828.0	9.0	39.0	0	0	0	0	0	0
MA1467.1_shift2 (ATOH1(var.2)) 
; dyads_m31 versus MA1467.1 (ATOH1(var.2)); m=15/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.599899; --AACAGCTGTY-------
; cor=; Ncor=
a	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0	0	0	0	0	0	0
c	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0	0	0	0	0	0	0
g	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0	0	0	0	0	0	0
t	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0	0	0	0	0	0	0
MA1571.1_rc_shift1 (TGIF2LX_rc) 
; dyads_m31 versus MA1571.1_rc (TGIF2LX_rc); m=16/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.596501; -TGACAgcTGTCA------
; cor=; Ncor=
a	0	232.0	66.0	2539.0	22.0	2539.0	38.0	362.0	40.0	59.0	428.0	47.0	2539.0	0	0	0	0	0	0
c	0	361.0	172.0	72.0	2539.0	23.0	554.0	1566.0	316.0	29.0	132.0	2539.0	145.0	0	0	0	0	0	0
g	0	132.0	2539.0	127.0	23.0	318.0	1568.0	575.0	18.0	2539.0	64.0	187.0	355.0	0	0	0	0	0	0
t	0	2539.0	45.0	428.0	64.0	37.0	380.0	37.0	2539.0	32.0	2539.0	52.0	237.0	0	0	0	0	0	0
MA0797.1_rc_shift1 (TGIF2_rc) 
; dyads_m31 versus MA0797.1_rc (TGIF2_rc); m=17/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.591926; -TGACAsCTGTCA------
; cor=; Ncor=
a	0	420.0	113.0	11801.0	83.0	11801.0	91.0	2690.0	41.0	156.0	155.0	52.0	11801.0	0	0	0	0	0	0
c	0	395.0	136.0	123.0	11801.0	57.0	4341.0	11801.0	270.0	51.0	396.0	11801.0	153.0	0	0	0	0	0	0
g	0	172.0	11801.0	621.0	77.0	410.0	7459.0	262.0	25.0	11801.0	34.0	48.0	421.0	0	0	0	0	0	0
t	0	11801.0	70.0	601.0	150.0	71.0	1501.0	324.0	11801.0	127.0	11801.0	97.0	477.0	0	0	0	0	0	0
MA1572.1_shift1 (TGIF2LY) 
; dyads_m31 versus MA1572.1 (TGIF2LY); m=18/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.584685; -TGACAgcTGTCA------
; cor=; Ncor=
a	0	736.0	162.0	5209.0	123.0	5209.0	130.0	1033.0	140.0	175.0	1084.0	135.0	5209.0	0	0	0	0	0	0
c	0	836.0	270.0	163.0	5209.0	37.0	1267.0	2850.0	848.0	61.0	371.0	5209.0	362.0	0	0	0	0	0	0
g	0	415.0	5209.0	349.0	66.0	833.0	2794.0	1188.0	73.0	5209.0	145.0	259.0	807.0	0	0	0	0	0	0
t	0	5209.0	104.0	1197.0	144.0	110.0	1018.0	138.0	5209.0	121.0	5209.0	172.0	679.0	0	0	0	0	0	0
MA1472.1_shift2 (BHLHA15(var.2)) 
; dyads_m31 versus MA1472.1 (BHLHA15(var.2)); m=19/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.577599; --avCAGCTGyy-------
; cor=; Ncor=
a	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0	0	0	0	0	0	0	0
c	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0	0	0	0	0	0	0	0
g	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0	0	0	0	0	0	0	0
t	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0	0	0	0	0	0	0	0
MA0091.1_shift0 (TAL1::TCF3) 
; dyads_m31 versus MA0091.1 (TAL1::TCF3); m=20/33; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.564085; mgAmCAKMTGkT-------
; cor=; Ncor=
a	13.0	9.0	39.0	20.0	0.0	44.0	0.0	12.0	0.0	0.0	0.0	4.0	0	0	0	0	0	0	0
c	14.0	10.0	0.0	24.0	43.0	0.0	1.0	32.0	0.0	0.0	3.0	4.0	0	0	0	0	0	0	0
g	8.0	20.0	3.0	0.0	1.0	0.0	11.0	0.0	0.0	43.0	20.0	2.0	0	0	0	0	0	0	0
t	9.0	5.0	2.0	0.0	0.0	0.0	32.0	0.0	44.0	1.0	21.0	34.0	0	0	0	0	0	0	0
MA0783.1_rc_shift1 (PKNOX2_rc) 
; dyads_m31 versus MA0783.1_rc (PKNOX2_rc); m=21/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.562635; -TGACAsCTGTCA------
; cor=; Ncor=
a	0	9.0	3.0	1167.0	0.0	1204.0	0.0	118.0	4.0	9.0	6.0	0.0	1192.0	0	0	0	0	0	0
c	0	21.0	6.0	5.0	1370.0	0.0	702.0	1298.0	1.0	0.0	13.0	1389.0	9.0	0	0	0	0	0	0
g	0	1.0	1265.0	29.0	1.0	4.0	304.0	0.0	0.0	1250.0	3.0	6.0	0.0	0	0	0	0	0	0
t	0	1190.0	11.0	10.0	3.0	0.0	39.0	7.0	1169.0	0.0	1124.0	1.0	37.0	0	0	0	0	0	0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc) 
; dyads_m31 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=22/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.554246; --csCAGCTGsg-------
; cor=; Ncor=
a	0	0	3886.0	4449.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4402.0	0	0	0	0	0	0	0
c	0	0	5625.0	5112.0	18327.0	37.0	53.0	18288.0	52.0	11.0	7267.0	4447.0	0	0	0	0	0	0	0
g	0	0	4447.0	7269.0	15.0	52.0	18288.0	53.0	37.0	18331.0	5110.0	5621.0	0	0	0	0	0	0	0
t	0	0	4398.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4453.0	3886.0	0	0	0	0	0	0	0
MA0816.1_shift2 (Ascl2) 
; dyads_m31 versus MA0816.1 (Ascl2); m=23/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.538755; --arCAGCTGyy-------
; cor=; Ncor=
a	0	0	237.0	128.0	3.0	300.0	7.0	3.0	4.0	0.0	6.0	34.0	0	0	0	0	0	0	0
c	0	0	36.0	41.0	300.0	0.0	23.0	300.0	0.0	1.0	206.0	101.0	0	0	0	0	0	0	0
g	0	0	63.0	172.0	0.0	0.0	300.0	2.0	0.0	300.0	15.0	28.0	0	0	0	0	0	0	0
t	0	0	16.0	1.0	1.0	15.0	18.0	1.0	300.0	2.0	94.0	199.0	0	0	0	0	0	0	0
MA0665.1_rc_shift2 (MSC_rc) 
; dyads_m31 versus MA0665.1_rc (MSC_rc); m=24/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.535902; --AACAGCTGTT-------
; cor=; Ncor=
a	0	0	69.0	69.0	4.0	69.0	0.0	0.0	0.0	1.0	0.0	7.0	0	0	0	0	0	0	0
c	0	0	4.0	4.0	69.0	0.0	3.0	69.0	0.0	3.0	3.0	18.0	0	0	0	0	0	0	0
g	0	0	9.0	10.0	0.0	0.0	69.0	12.0	0.0	69.0	12.0	0.0	0	0	0	0	0	0	0
t	0	0	0.0	3.0	0.0	0.0	0.0	0.0	69.0	0.0	69.0	69.0	0	0	0	0	0	0	0
MA1100.2_rc_shift2 (ASCL1_rc) 
; dyads_m31 versus MA1100.2_rc (ASCL1_rc); m=25/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.529427; --rgCAGCTGyy-------
; cor=; Ncor=
a	0	0	1194.0	1349.0	29.0	4413.0	20.0	625.0	218.0	14.0	354.0	726.0	0	0	0	0	0	0	0
c	0	0	889.0	814.0	4413.0	121.0	1320.0	4413.0	60.0	0.0	3079.0	1495.0	0	0	0	0	0	0	0
g	0	0	1487.0	3065.0	0.0	24.0	4413.0	1288.0	157.0	4413.0	521.0	926.0	0	0	0	0	0	0	0
t	0	0	843.0	177.0	52.0	118.0	729.0	107.0	4413.0	0.0	1334.0	1267.0	0	0	0	0	0	0	0
MA0691.1_shift2 (TFAP4) 
; dyads_m31 versus MA0691.1 (TFAP4); m=26/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.527983; --AwCAGCTGwT-------
; cor=; Ncor=
a	0	0	3423.0	2159.0	0.0	3423.0	2.0	21.0	1.0	0.0	1810.0	299.0	0	0	0	0	0	0	0
c	0	0	500.0	546.0	3423.0	2.0	85.0	3423.0	1.0	1.0	114.0	682.0	0	0	0	0	0	0	0
g	0	0	337.0	62.0	0.0	0.0	3423.0	49.0	0.0	3423.0	333.0	433.0	0	0	0	0	0	0	0
t	0	0	228.0	1264.0	0.0	0.0	14.0	6.0	3423.0	0.0	1613.0	3423.0	0	0	0	0	0	0	0
MA0667.1_shift2 (MYF6) 
; dyads_m31 versus MA0667.1 (MYF6); m=27/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.515538; --AACArCTGTY-------
; cor=; Ncor=
a	0	0	444.0	444.0	0.0	444.0	159.0	12.0	11.0	0.0	2.0	0.0	0	0	0	0	0	0	0
c	0	0	12.0	18.0	444.0	3.0	30.0	353.0	0.0	2.0	22.0	159.0	0	0	0	0	0	0	0
g	0	0	70.0	24.0	0.0	7.0	256.0	35.0	0.0	444.0	0.0	7.0	0	0	0	0	0	0	0
t	0	0	7.0	1.0	0.0	0.0	12.0	56.0	444.0	0.0	444.0	444.0	0	0	0	0	0	0	0
MA0820.1_shift2 (FIGLA) 
; dyads_m31 versus MA0820.1 (FIGLA); m=28/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.504414; --wmCACCTGkw-------
; cor=; Ncor=
a	0	0	886.0	690.0	0.0	1780.0	0.0	9.0	56.0	36.0	154.0	455.0	0	0	0	0	0	0	0
c	0	0	270.0	693.0	1780.0	46.0	1780.0	1780.0	0.0	33.0	225.0	283.0	0	0	0	0	0	0	0
g	0	0	175.0	160.0	0.0	0.0	527.0	311.0	17.0	1780.0	569.0	289.0	0	0	0	0	0	0	0
t	0	0	449.0	237.0	29.0	14.0	0.0	0.0	1780.0	65.0	832.0	753.0	0	0	0	0	0	0	0
MA0774.1_rc_shift6 (MEIS2_rc) 
; dyads_m31 versus MA0774.1_rc (MEIS2_rc); m=29/33; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.482856; ------sCTGTCAa-----
; cor=; Ncor=
a	0	0	0	0	0	0	88.0	67.0	0.0	5.0	62.0	0.0	1351.0	1351.0	0	0	0	0	0
c	0	0	0	0	0	0	650.0	1351.0	4.0	0.0	25.0	1351.0	40.0	314.0	0	0	0	0	0
g	0	0	0	0	0	0	701.0	98.0	7.0	1351.0	3.0	0.0	3.0	264.0	0	0	0	0	0
t	0	0	0	0	0	0	157.0	83.0	1351.0	9.0	1351.0	0.0	31.0	408.0	0	0	0	0	0
MA0048.2_shift2 (NHLH1) 
; dyads_m31 versus MA0048.2 (NHLH1); m=30/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.474192; --cGCAGCTGCk-------
; cor=; Ncor=
a	0	0	788.0	461.0	3.0	2166.0	0.0	96.0	0.0	2.0	296.0	308.0	0	0	0	0	0	0	0
c	0	0	2166.0	179.0	2166.0	3.0	301.0	2166.0	4.0	4.0	2166.0	736.0	0	0	0	0	0	0	0
g	0	0	181.0	2166.0	0.0	1.0	2166.0	124.0	4.0	2166.0	102.0	2166.0	0	0	0	0	0	0	0
t	0	0	111.0	142.0	0.0	0.0	114.0	0.0	2166.0	1.0	350.0	1489.0	0	0	0	0	0	0	0
MA0775.1_rc_shift6 (MEIS3_rc) 
; dyads_m31 versus MA0775.1_rc (MEIS3_rc); m=31/33; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.464538; ------scTGTCAw-----
; cor=; Ncor=
a	0	0	0	0	0	0	975.0	2094.0	145.0	160.0	53.0	0.0	7165.0	3451.0	0	0	0	0	0
c	0	0	0	0	0	0	2888.0	7165.0	468.0	8.0	455.0	7165.0	260.0	1788.0	0	0	0	0	0
g	0	0	0	0	0	0	2342.0	1889.0	8.0	7165.0	20.0	6.0	383.0	60.0	0	0	0	0	0
t	0	0	0	0	0	0	960.0	1690.0	7165.0	53.0	7165.0	0.0	465.0	1866.0	0	0	0	0	0
MA0498.2_rc_shift7 (MEIS1_rc) 
; dyads_m31 versus MA0498.2_rc (MEIS1_rc); m=32/33; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.425072; -------cTGTCAw-----
; cor=; Ncor=
a	0	0	0	0	0	0	0	15106.0	3861.0	1155.0	0.0	0.0	77159.0	24921.0	0	0	0	0	0
c	0	0	0	0	0	0	0	29965.0	9263.0	0.0	672.0	77159.0	3174.0	9714.0	0	0	0	0	0
g	0	0	0	0	0	0	0	14864.0	0.0	77159.0	2903.0	1249.0	5575.0	18797.0	0	0	0	0	0
t	0	0	0	0	0	0	0	17224.0	77159.0	0.0	77159.0	0.0	8690.0	23727.0	0	0	0	0	0
MA0782.2_rc_shift4 (PKNOX1_rc) 
; dyads_m31 versus MA0782.2_rc (PKNOX1_rc); m=33/33; ncol2=15; w=11; offset=4; strand=R; shift=4; score=0.424758; ----yagCTGTCAcTCAwa
; cor=; Ncor=
a	0	0	0	0	9877.0	12900.0	6042.0	5092.0	2629.0	886.0	720.0	691.0	36918.0	7333.0	1196.0	1043.0	29794.0	10355.0	11050.0
c	0	0	0	0	10296.0	9060.0	9128.0	27367.0	2408.0	580.0	2459.0	37713.0	1027.0	26182.0	1330.0	36106.0	3322.0	9535.0	9599.0
g	0	0	0	0	9268.0	9386.0	16341.0	4759.0	944.0	37846.0	410.0	1004.0	878.0	4123.0	678.0	1160.0	1625.0	9828.0	9503.0
t	0	0	0	0	10522.0	8617.0	8452.0	2745.0	33982.0	651.0	36374.0	555.0	1140.0	2325.0	36759.0	1654.0	5222.0	10245.0	9811.0