Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m32/peak-motifs_dyads_m32.tf
		file1	1	14	317
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m32 MA0499.2 dyads_m32dyads_m32 MYOD1 0.892 0.828 14 13 13 14 0.9286 0.9286 1.0000 R 0
dyads_m32 MA0832.1 dyads_m32dyads_m32 Tcf21 0.821 0.821 14 14 14 14 1.0000 1.0000 1.0000 D 0
dyads_m32 MA1621.1 dyads_m32dyads_m32 Rbpjl 0.801 0.801 14 14 14 14 1.0000 1.0000 1.0000 R 0
dyads_m32 MA0745.2 dyads_m32dyads_m32 SNAI2 0.840 0.780 14 13 13 14 0.9286 0.9286 1.0000 R 0
dyads_m32 MA0830.2 dyads_m32dyads_m32 TCF4 0.785 0.729 14 13 13 14 0.9286 0.9286 1.0000 R 0
dyads_m32 MA1485.1 dyads_m32dyads_m32 FERD3L 0.710 0.710 14 14 14 14 1.0000 1.0000 1.0000 R 0
dyads_m32 MA1631.1 dyads_m32dyads_m32 ASCL1(var.2) 0.765 0.710 14 13 13 14 0.9286 0.9286 1.0000 R 0
dyads_m32 MA1618.1 dyads_m32dyads_m32 Ptf1a 0.751 0.697 14 13 13 14 0.9286 0.9286 1.0000 D 1
dyads_m32 MA0500.2 dyads_m32dyads_m32 MYOG 0.812 0.696 14 12 12 14 0.8571 0.8571 1.0000 R 1
dyads_m32 MA0521.1 dyads_m32dyads_m32 Tcf12 0.871 0.684 14 11 11 14 0.7857 0.7857 1.0000 D 2
dyads_m32 MA1620.1 dyads_m32dyads_m32 Ptf1a(var.3) 0.796 0.682 14 12 12 14 0.8571 0.8571 1.0000 R 1
dyads_m32 MA1641.1 dyads_m32dyads_m32 MYF5 0.772 0.662 14 12 12 14 0.8571 0.8571 1.0000 D 1
dyads_m32 MA1619.1 dyads_m32dyads_m32 Ptf1a(var.2) 0.768 0.658 14 12 12 14 0.8571 0.8571 1.0000 R 1
dyads_m32 MA0091.1 dyads_m32dyads_m32 TAL1::TCF3 0.764 0.655 14 12 12 14 0.8571 0.8571 1.0000 R 2
dyads_m32 MA0816.1 dyads_m32dyads_m32 Ascl2 0.870 0.622 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m32 MA0744.2 dyads_m32dyads_m32 SCRT2 0.804 0.615 14 16 13 17 0.7647 0.9286 0.8125 D -3
dyads_m32 MA0743.2 dyads_m32dyads_m32 SCRT1 0.797 0.609 14 16 13 17 0.7647 0.9286 0.8125 D -3
dyads_m32 MA1105.2 dyads_m32dyads_m32 GRHL2 0.710 0.609 14 12 12 14 0.8571 0.8571 1.0000 D 0
dyads_m32 MA0820.1 dyads_m32dyads_m32 FIGLA 0.846 0.604 14 10 10 14 0.7143 0.7143 1.0000 R 2
dyads_m32 MA0665.1 dyads_m32dyads_m32 MSC 0.845 0.604 14 10 10 14 0.7143 0.7143 1.0000 R 2
dyads_m32 MA1559.1 dyads_m32dyads_m32 SNAI3 0.845 0.604 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m32 MA0667.1 dyads_m32dyads_m32 MYF6 0.827 0.591 14 10 10 14 0.7143 0.7143 1.0000 R 2
dyads_m32 MA1472.1 dyads_m32dyads_m32 BHLHA15(var.2) 0.819 0.585 14 10 10 14 0.7143 0.7143 1.0000 R 2
dyads_m32 MA0691.1 dyads_m32dyads_m32 TFAP4 0.819 0.585 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m32 MA1100.2 dyads_m32dyads_m32 ASCL1 0.808 0.577 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m32 MA0103.3 dyads_m32dyads_m32 ZEB1 0.729 0.573 14 11 11 14 0.7857 0.7857 1.0000 R 1
dyads_m32 MA1467.1 dyads_m32dyads_m32 ATOH1(var.2) 0.799 0.571 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m32 MA1558.1 dyads_m32dyads_m32 SNAI1 0.788 0.563 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m32 MA1648.1 dyads_m32dyads_m32 TCF12(var.2) 0.705 0.554 14 11 11 14 0.7857 0.7857 1.0000 R 1
dyads_m32 MA0048.2 dyads_m32dyads_m32 NHLH1 0.754 0.539 14 10 10 14 0.7143 0.7143 1.0000 R 2
dyads_m32 MA1635.1 dyads_m32dyads_m32 BHLHE22(var.2) 0.746 0.533 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m32 MA1570.1 dyads_m32dyads_m32 TFAP4(var.2) 0.712 0.509 14 10 10 14 0.7143 0.7143 1.0000 D 2
dyads_m32 MA1647.1 dyads_m32dyads_m32 PRDM4 0.729 0.410 14 11 9 16 0.5625 0.6429 0.8182 R -2
dyads_m32 MA0622.1 dyads_m32dyads_m32 Mlxip 0.708 0.404 14 8 8 14 0.5714 0.5714 1.0000 R 3
dyads_m32 MA0480.1 dyads_m32dyads_m32 Foxo1 0.714 0.402 14 11 9 16 0.5625 0.6429 0.8182 R -2 
 Host name	pedagogix
 Job started	2020-04-14.000552
 Job done	2020-04-14.000630
 Seconds	5.34
	user	5.34
	system	0.63
	cuser	31.04
;	csystem	1.8