One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m34/peak-motifs_dyads_m34_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m34_shift2 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m34_shift2 (dyads_m34dyads_m34)
; dyads_m34 (dyads_m34dyads_m34); m=0 (reference); ncol1=14; shift=2; ncol=17; --csGCCCAGCCCCss- ; Alignment reference a 0 0 43 56 6 6 3 2 177 6 2 4 5 11 50 39 0 c 0 0 95 69 11 227 226 233 47 6 222 227 216 197 64 101 0 g 0 0 49 62 209 3 5 0 4 216 9 3 6 10 76 71 0 t 0 0 50 50 11 1 3 2 9 9 4 3 10 19 47 26 0

MA1599.1_shift1 (ZNF682)
; dyads_m34 versus MA1599.1 (ZNF682); m=1/10; ncol2=16; w=14; offset=-1; strand=D; shift=1; score=0.68176; -crGGCyAAGCCCCwrt ; cor=; Ncor= a 0 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 c 0 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 g 0 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 t 0 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0

MA1513.1_shift4 (KLF15)
; dyads_m34 versus MA1513.1 (KLF15); m=2/10; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.660848; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0746.2_shift3 (SP3)
; dyads_m34 versus MA0746.2 (SP3); m=3/10; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.660294; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA0079.4_shift1 (SP1)
; dyads_m34 versus MA0079.4 (SP1); m=4/10; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.653347; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA1653.1_shift3 (ZNF148)
; dyads_m34 versus MA1653.1 (ZNF148); m=5/10; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.602824; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA0516.2_shift0 (SP2)
; dyads_m34 versus MA0516.2 (SP2); m=6/10; ncol2=17; w=14; offset=-2; strand=D; shift=0; score=0.59649; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA0685.1_shift1 (SP4)
; dyads_m34 versus MA0685.1 (SP4); m=7/10; ncol2=17; w=14; offset=-1; strand=D; shift=1; score=0.581714; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0741.1_shift4 (KLF16)
; dyads_m34 versus MA0741.1 (KLF16); m=8/10; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.565036; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA0599.1_shift4 (KLF5)
; dyads_m34 versus MA0599.1 (KLF5); m=9/10; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.563309; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA1656.1_shift0 (ZNF449)
; dyads_m34 versus MA1656.1 (ZNF449); m=10/10; ncol2=14; w=12; offset=-2; strand=D; shift=0; score=0.53567; cvaAGCCCAACcas--- ; cor=; Ncor= a 1809.0 2104.0 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 2595.0 1670.0 0 0 0 c 2716.0 2320.0 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 1875.0 2195.0 0 0 0 g 1566.0 1921.0 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 1585.0 2237.0 0 0 0 t 1569.0 1315.0 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 1605.0 1558.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m34_shift2 (dyads_m34dyads_m34)				; dyads_m34 (dyads_m34dyads_m34); m=0 (reference); ncol1=14; shift=2; ncol=17; --csGCCCAGCCCCss- ; Alignment reference a 0 0 43 56 6 6 3 2 177 6 2 4 5 11 50 39 0 c 0 0 95 69 11 227 226 233 47 6 222 227 216 197 64 101 0 g 0 0 49 62 209 3 5 0 4 216 9 3 6 10 76 71 0 t 0 0 50 50 11 1 3 2 9 9 4 3 10 19 47 26 0
MA1599.1_shift1 (ZNF682)				; dyads_m34 versus MA1599.1 (ZNF682); m=1/10; ncol2=16; w=14; offset=-1; strand=D; shift=1; score=0.68176; -crGGCyAAGCCCCwrt ; cor=; Ncor= a 0 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 c 0 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 g 0 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 t 0 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0
MA1513.1_shift4 (KLF15)				; dyads_m34 versus MA1513.1 (KLF15); m=2/10; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.660848; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0
MA0746.2_shift3 (SP3)				; dyads_m34 versus MA0746.2 (SP3); m=3/10; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.660294; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0
MA0079.4_shift1 (SP1)				; dyads_m34 versus MA0079.4 (SP1); m=4/10; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.653347; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0
MA1653.1_shift3 (ZNF148)				; dyads_m34 versus MA1653.1 (ZNF148); m=5/10; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.602824; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0
MA0516.2_shift0 (SP2)				; dyads_m34 versus MA0516.2 (SP2); m=6/10; ncol2=17; w=14; offset=-2; strand=D; shift=0; score=0.59649; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0
MA0685.1_shift1 (SP4)				; dyads_m34 versus MA0685.1 (SP4); m=7/10; ncol2=17; w=14; offset=-1; strand=D; shift=1; score=0.581714; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0
MA0741.1_shift4 (KLF16)				; dyads_m34 versus MA0741.1 (KLF16); m=8/10; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.565036; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0
MA0599.1_shift4 (KLF5)				; dyads_m34 versus MA0599.1 (KLF5); m=9/10; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.563309; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0
MA1656.1_shift0 (ZNF449)				; dyads_m34 versus MA1656.1 (ZNF449); m=10/10; ncol2=14; w=12; offset=-2; strand=D; shift=0; score=0.53567; cvaAGCCCAACcas--- ; cor=; Ncor= a 1809.0 2104.0 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 2595.0 1670.0 0 0 0 c 2716.0 2320.0 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 1875.0 2195.0 0 0 0 g 1566.0 1921.0 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 1585.0 2237.0 0 0 0 t 1569.0 1315.0 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 1605.0 1558.0 0 0 0