One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m35/peak-motifs_dyads_m35_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m35_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m35_shift1 (dyads_m35dyads_m35)
; dyads_m35 (dyads_m35dyads_m35); m=0 (reference); ncol1=10; shift=1; ncol=14; -ssCCGCGCss--- ; Alignment reference a 0 42 37 3 0 0 0 0 1 53 34 0 0 0 c 0 192 139 317 374 0 390 0 380 147 159 0 0 0 g 0 118 170 68 16 390 0 390 4 146 153 0 0 0 t 0 38 44 2 0 0 0 0 5 44 44 0 0 0

MA0632.2_shift1 (TCFL5)
; dyads_m35 versus MA0632.2 (TCFL5); m=1/5; ncol2=10; w=10; offset=0; strand=D; shift=1; score=0.722465; -kCrCGCGCmc--- ; cor=; Ncor= a 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 10588.0 0 0 0 c 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 47538.0 0 0 0 g 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 5747.0 0 0 0 t 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0 8670.0 0 0 0

MA1650.1_shift1 (ZBTB14)
; dyads_m35 versus MA1650.1 (ZBTB14); m=2/5; ncol2=12; w=10; offset=0; strand=D; shift=1; score=0.709204; -ssCCGCGCACss- ; cor=; Ncor= a 0 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 c 0 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 g 0 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 t 0 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0

MA1516.1_shift1 (KLF3)
; dyads_m35 versus MA1516.1 (KLF3); m=3/5; ncol2=11; w=10; offset=0; strand=D; shift=1; score=0.67781; -grCCrCGCCCw-- ; cor=; Ncor= a 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 c 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 g 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 t 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0

MA1513.1_shift0 (KLF15)
; dyads_m35 versus MA1513.1 (KLF15); m=4/5; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.66797; scCCCGCCCcs--- ; cor=; Ncor= a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0

MA0506.1_rc_shift4 (NRF1_rc)
; dyads_m35 versus MA0506.1_rc (NRF1_rc); m=5/5; ncol2=11; w=7; offset=3; strand=R; shift=4; score=0.405784; ----yGCGCAkGCG ; cor=; Ncor= a 0 0 0 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 c 0 0 0 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 g 0 0 0 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 t 0 0 0 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m35_shift1 (dyads_m35dyads_m35)				; dyads_m35 (dyads_m35dyads_m35); m=0 (reference); ncol1=10; shift=1; ncol=14; -ssCCGCGCss--- ; Alignment reference a 0 42 37 3 0 0 0 0 1 53 34 0 0 0 c 0 192 139 317 374 0 390 0 380 147 159 0 0 0 g 0 118 170 68 16 390 0 390 4 146 153 0 0 0 t 0 38 44 2 0 0 0 0 5 44 44 0 0 0
MA0632.2_shift1 (TCFL5)				; dyads_m35 versus MA0632.2 (TCFL5); m=1/5; ncol2=10; w=10; offset=0; strand=D; shift=1; score=0.722465; -kCrCGCGCmc--- ; cor=; Ncor= a 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 10588.0 0 0 0 c 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 47538.0 0 0 0 g 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 5747.0 0 0 0 t 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0 8670.0 0 0 0
MA1650.1_shift1 (ZBTB14)				; dyads_m35 versus MA1650.1 (ZBTB14); m=2/5; ncol2=12; w=10; offset=0; strand=D; shift=1; score=0.709204; -ssCCGCGCACss- ; cor=; Ncor= a 0 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 c 0 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 g 0 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 t 0 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0
MA1516.1_shift1 (KLF3)				; dyads_m35 versus MA1516.1 (KLF3); m=3/5; ncol2=11; w=10; offset=0; strand=D; shift=1; score=0.67781; -grCCrCGCCCw-- ; cor=; Ncor= a 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 c 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 g 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 t 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0
MA1513.1_shift0 (KLF15)				; dyads_m35 versus MA1513.1 (KLF15); m=4/5; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.66797; scCCCGCCCcs--- ; cor=; Ncor= a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0
MA0506.1_rc_shift4 (NRF1_rc)				; dyads_m35 versus MA0506.1_rc (NRF1_rc); m=5/5; ncol2=11; w=7; offset=3; strand=R; shift=4; score=0.405784; ----yGCGCAkGCG ; cor=; Ncor= a 0 0 0 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 c 0 0 0 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 g 0 0 0 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 t 0 0 0 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0