Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36.tf
		file1	1	13	204
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m36 MA1513.1 dyads_m36dyads_m36 KLF15 0.741 0.627 13 11 11 13 0.8462 0.8462 1.0000 D 1
dyads_m36 MA1631.1 dyads_m36dyads_m36 ASCL1(var.2) 0.849 0.623 13 13 11 15 0.7333 0.8462 0.8462 D -2
dyads_m36 MA0522.3 dyads_m36dyads_m36 TCF3 0.852 0.608 13 11 10 14 0.7143 0.7692 0.9091 D -1
dyads_m36 MA1648.1 dyads_m36dyads_m36 TCF12(var.2) 0.850 0.607 13 11 10 14 0.7143 0.7692 0.9091 D -1
dyads_m36 MA0830.2 dyads_m36dyads_m36 TCF4 0.813 0.597 13 13 11 15 0.7333 0.8462 0.8462 D -2
dyads_m36 MA0103.3 dyads_m36dyads_m36 ZEB1 0.819 0.585 13 11 10 14 0.7143 0.7692 0.9091 D -1
dyads_m36 MA1627.1 dyads_m36dyads_m36 Wt1 0.718 0.575 13 14 12 15 0.8000 0.9231 0.8571 D 1
dyads_m36 MA1558.1 dyads_m36dyads_m36 SNAI1 0.853 0.548 13 10 9 14 0.6429 0.6923 0.9000 R -1
dyads_m36 MA1630.1 dyads_m36dyads_m36 Znf281 0.746 0.533 13 11 10 14 0.7143 0.7692 0.9091 R 3
dyads_m36 MA0597.1 dyads_m36dyads_m36 THAP1 0.760 0.526 13 9 9 13 0.6923 0.6923 1.0000 D 4
dyads_m36 MA0738.1 dyads_m36dyads_m36 HIC2 0.728 0.504 13 9 9 13 0.6923 0.6923 1.0000 D 4
dyads_m36 MA1559.1 dyads_m36dyads_m36 SNAI3 0.783 0.503 13 10 9 14 0.6429 0.6923 0.9000 R -1
dyads_m36 MA1621.1 dyads_m36dyads_m36 Rbpjl 0.706 0.485 13 14 11 16 0.6875 0.8462 0.7857 D -3
dyads_m36 MA1493.1 dyads_m36dyads_m36 HES6 0.724 0.465 13 10 9 14 0.6429 0.6923 0.9000 R -1
dyads_m36 MA0616.2 dyads_m36dyads_m36 HES2 0.704 0.453 13 10 9 14 0.6429 0.6923 0.9000 R -1
dyads_m36 MA0820.1 dyads_m36dyads_m36 FIGLA 0.703 0.452 13 10 9 14 0.6429 0.6923 0.9000 D -1
dyads_m36 MA1100.2 dyads_m36dyads_m36 ASCL1 0.701 0.451 13 10 9 14 0.6429 0.6923 0.9000 R -1 
 Host name	pedagogix
 Job started	2020-04-14.000658
 Job done	2020-04-14.000715
 Seconds	2.67
	user	2.67
	system	0.31
	cuser	13.65
;	csystem	0.81