One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m36_shift3 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m36_shift3 (dyads_m36dyads_m36)
; dyads_m36 (dyads_m36dyads_m36); m=0 (reference); ncol1=13; shift=3; ncol=16; ---vcACCTGCCCCbs ; Alignment reference a 0 0 0 55 21 143 1 1 2 5 2 0 2 14 38 27 c 0 0 0 64 105 28 195 197 4 11 196 194 177 169 63 83 g 0 0 0 51 45 13 5 3 3 186 2 3 20 7 51 60 t 0 0 0 34 33 20 3 3 195 2 4 7 5 14 52 34

MA1513.1_shift4 (KLF15)
; dyads_m36 versus MA1513.1 (KLF15); m=1/17; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.627294; ----scCCCGCCCcs- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0

MA1631.1_shift1 (ASCL1(var.2))
; dyads_m36 versus MA1631.1 (ASCL1(var.2)); m=2/17; ncol2=13; w=11; offset=-2; strand=D; shift=1; score=0.622549; -cdgCACCTGCysc-- ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0522.3_shift2 (TCF3)
; dyads_m36 versus MA0522.3 (TCF3); m=3/17; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.608247; --svCACCTGCss--- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA1648.1_shift2 (TCF12(var.2))
; dyads_m36 versus MA1648.1 (TCF12(var.2)); m=4/17; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.607329; --ssCACCTGCys--- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0830.2_shift1 (TCF4)
; dyads_m36 versus MA0830.2 (TCF4); m=5/17; ncol2=13; w=11; offset=-2; strand=D; shift=1; score=0.596555; -cggCACCTGccss-- ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0103.3_shift2 (ZEB1)
; dyads_m36 versus MA0103.3 (ZEB1); m=6/17; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.584736; --ssCACCTGsss--- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0

MA1627.1_shift4 (Wt1)
; dyads_m36 versus MA1627.1 (Wt1); m=7/17; ncol2=14; w=12; offset=1; strand=D; shift=4; score=0.57451; ----cycCTCCCCCAC ; cor=; Ncor= a 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0

MA1558.1_rc_shift2 (SNAI1_rc)
; dyads_m36 versus MA1558.1_rc (SNAI1_rc); m=8/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score= 0.5482; --yrCACCTGyh---- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA1630.1_rc_shift6 (Znf281_rc)
; dyads_m36 versus MA1630.1_rc (Znf281_rc); m=9/17; ncol2=11; w=10; offset=3; strand=R; shift=6; score=0.533153; ------CcTCCCCCAc ; cor=; Ncor= a 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 c 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 g 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 t 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0

MA0597.1_shift7 (THAP1)
; dyads_m36 versus MA0597.1 (THAP1); m=10/17; ncol2=9; w=9; offset=4; strand=D; shift=7; score=0.526249; -------ytGCCMkya ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0

MA0738.1_shift7 (HIC2)
; dyads_m36 versus MA0738.1 (HIC2); m=11/17; ncol2=9; w=9; offset=4; strand=D; shift=7; score=0.503668; -------rTGCCMrsy ; cor=; Ncor= a 0 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 c 0 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 g 0 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 t 0 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0

MA1559.1_rc_shift2 (SNAI3_rc)
; dyads_m36 versus MA1559.1_rc (SNAI3_rc); m=12/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.503335; --trCACCTGyt---- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0

MA1621.1_shift0 (Rbpjl)
; dyads_m36 versus MA1621.1 (Rbpjl); m=13/17; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.485425; svmaCACCTGtsyc-- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0

MA1493.1_rc_shift2 (HES6_rc)
; dyads_m36 versus MA1493.1_rc (HES6_rc); m=14/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.465291; --rACACGTGCC---- ; cor=; Ncor= a 0 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 0 0 0 0 c 0 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 0 0 0 0 g 0 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 0 0 0 0 t 0 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0 0 0 0 0

MA0616.2_rc_shift2 (HES2_rc)
; dyads_m36 versus MA0616.2_rc (HES2_rc); m=15/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.452676; --grCACGTGcC---- ; cor=; Ncor= a 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 0 0 c 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 0 0 g 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 0 0 t 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0 0 0

MA0820.1_shift2 (FIGLA)
; dyads_m36 versus MA0820.1 (FIGLA); m=16/17; ncol2=10; w=9; offset=-1; strand=D; shift=2; score=0.452162; --wmCACCTGkw---- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; dyads_m36 versus MA1100.2_rc (ASCL1_rc); m=17/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.450726; --rgCAGCTGyy---- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m36_shift3 (dyads_m36dyads_m36)				; dyads_m36 (dyads_m36dyads_m36); m=0 (reference); ncol1=13; shift=3; ncol=16; ---vcACCTGCCCCbs ; Alignment reference a 0 0 0 55 21 143 1 1 2 5 2 0 2 14 38 27 c 0 0 0 64 105 28 195 197 4 11 196 194 177 169 63 83 g 0 0 0 51 45 13 5 3 3 186 2 3 20 7 51 60 t 0 0 0 34 33 20 3 3 195 2 4 7 5 14 52 34
MA1513.1_shift4 (KLF15)				; dyads_m36 versus MA1513.1 (KLF15); m=1/17; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.627294; ----scCCCGCCCcs- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0
MA1631.1_shift1 (ASCL1(var.2))				; dyads_m36 versus MA1631.1 (ASCL1(var.2)); m=2/17; ncol2=13; w=11; offset=-2; strand=D; shift=1; score=0.622549; -cdgCACCTGCysc-- ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0
MA0522.3_shift2 (TCF3)				; dyads_m36 versus MA0522.3 (TCF3); m=3/17; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.608247; --svCACCTGCss--- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0
MA1648.1_shift2 (TCF12(var.2))				; dyads_m36 versus MA1648.1 (TCF12(var.2)); m=4/17; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.607329; --ssCACCTGCys--- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0
MA0830.2_shift1 (TCF4)				; dyads_m36 versus MA0830.2 (TCF4); m=5/17; ncol2=13; w=11; offset=-2; strand=D; shift=1; score=0.596555; -cggCACCTGccss-- ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0
MA0103.3_shift2 (ZEB1)				; dyads_m36 versus MA0103.3 (ZEB1); m=6/17; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.584736; --ssCACCTGsss--- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0
MA1627.1_shift4 (Wt1)				; dyads_m36 versus MA1627.1 (Wt1); m=7/17; ncol2=14; w=12; offset=1; strand=D; shift=4; score=0.57451; ----cycCTCCCCCAC ; cor=; Ncor= a 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0
MA1558.1_rc_shift2 (SNAI1_rc)				; dyads_m36 versus MA1558.1_rc (SNAI1_rc); m=8/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score= 0.5482; --yrCACCTGyh---- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0
MA1630.1_rc_shift6 (Znf281_rc)				; dyads_m36 versus MA1630.1_rc (Znf281_rc); m=9/17; ncol2=11; w=10; offset=3; strand=R; shift=6; score=0.533153; ------CcTCCCCCAc ; cor=; Ncor= a 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 c 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 g 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 t 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0
MA0597.1_shift7 (THAP1)				; dyads_m36 versus MA0597.1 (THAP1); m=10/17; ncol2=9; w=9; offset=4; strand=D; shift=7; score=0.526249; -------ytGCCMkya ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0
MA0738.1_shift7 (HIC2)				; dyads_m36 versus MA0738.1 (HIC2); m=11/17; ncol2=9; w=9; offset=4; strand=D; shift=7; score=0.503668; -------rTGCCMrsy ; cor=; Ncor= a 0 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 c 0 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 g 0 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 t 0 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0
MA1559.1_rc_shift2 (SNAI3_rc)				; dyads_m36 versus MA1559.1_rc (SNAI3_rc); m=12/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.503335; --trCACCTGyt---- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0
MA1621.1_shift0 (Rbpjl)				; dyads_m36 versus MA1621.1 (Rbpjl); m=13/17; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.485425; svmaCACCTGtsyc-- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0
MA1493.1_rc_shift2 (HES6_rc)				; dyads_m36 versus MA1493.1_rc (HES6_rc); m=14/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.465291; --rACACGTGCC---- ; cor=; Ncor= a 0 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 0 0 0 0 c 0 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 0 0 0 0 g 0 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 0 0 0 0 t 0 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0 0 0 0 0
MA0616.2_rc_shift2 (HES2_rc)				; dyads_m36 versus MA0616.2_rc (HES2_rc); m=15/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.452676; --grCACGTGcC---- ; cor=; Ncor= a 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 0 0 c 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 0 0 g 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 0 0 t 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0 0 0
MA0820.1_shift2 (FIGLA)				; dyads_m36 versus MA0820.1 (FIGLA); m=16/17; ncol2=10; w=9; offset=-1; strand=D; shift=2; score=0.452162; --wmCACCTGkw---- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0
MA1100.2_rc_shift2 (ASCL1_rc)				; dyads_m36 versus MA1100.2_rc (ASCL1_rc); m=17/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.450726; --rgCAGCTGyy---- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0