One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m39/peak-motifs_dyads_m39.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m39/peak-motifs_dyads_m39_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m39_shift5 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m39_shift5 (dyads_m39dyads_m39)
; dyads_m39 (dyads_m39dyads_m39); m=0 (reference); ncol1=11; shift=5; ncol=17; -----gsTGACAGAkr- ; Alignment reference a 0 0 0 0 0 30 27 0 2 135 0 127 2 135 28 40 0 c 0 0 0 0 0 23 49 1 0 0 134 4 0 0 26 21 0 g 0 0 0 0 0 60 47 3 129 0 0 4 132 0 39 54 0 t 0 0 0 0 0 22 12 131 4 0 1 0 1 0 42 20 0

MA0513.1_rc_shift4 (SMAD2::SMAD3::SMAD4_rc)
; dyads_m39 versus MA0513.1_rc (SMAD2::SMAD3::SMAD4_rc); m=1/16; ncol2=13; w=11; offset=-1; strand=R; shift=4; score=0.643155; ----agGTGmsAGACag ; cor=; Ncor= a 0 0 0 0 540.0 152.0 0.0 97.0 0.0 283.0 23.0 899.0 0.0 718.0 0.0 594.0 133.0 c 0 0 0 0 35.0 47.0 133.0 18.0 3.0 280.0 539.0 0.0 0.0 103.0 877.0 34.0 168.0 g 0 0 0 0 214.0 583.0 736.0 19.0 896.0 125.0 231.0 0.0 899.0 45.0 8.0 75.0 432.0 t 0 0 0 0 110.0 117.0 30.0 765.0 0.0 211.0 106.0 0.0 0.0 33.0 14.0 196.0 166.0

MA0774.1_shift6 (MEIS2)
; dyads_m39 versus MA0774.1 (MEIS2); m=2/16; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.606147; ------tTGACAGs--- ; cor=; Ncor= a 0 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 c 0 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 g 0 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 t 0 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0

MA0775.1_shift6 (MEIS3)
; dyads_m39 versus MA0775.1 (MEIS3); m=3/16; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.599616; ------wTGACAgs--- ; cor=; Ncor= a 0 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 c 0 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 g 0 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 t 0 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0

MA0498.2_shift6 (MEIS1)
; dyads_m39 versus MA0498.2 (MEIS1); m=4/16; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.587257; ------wTGACAg---- ; cor=; Ncor= a 0 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 c 0 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 g 0 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 t 0 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0

MA0782.2_shift1 (PKNOX1)
; dyads_m39 versus MA0782.2 (PKNOX1); m=5/16; ncol2=15; w=11; offset=-4; strand=D; shift=1; score=0.581449; -twTGAgTGACAGctr- ; cor=; Ncor= a 0 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 c 0 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 g 0 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 t 0 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0

MA1642.1_shift6 (NEUROG2(var.2))
; dyads_m39 versus MA1642.1 (NEUROG2(var.2)); m=6/16; ncol2=13; w=10; offset=1; strand=D; shift=6; score=0.504735; ------rrraCAGATGG ; cor=; Ncor= a 0 0 0 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 c 0 0 0 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 g 0 0 0 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 t 0 0 0 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0

MA0797.1_shift7 (TGIF2)
; dyads_m39 versus MA0797.1 (TGIF2); m=7/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.499453; -------TGACAGsTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 c 0 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 g 0 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 t 0 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0

MA1114.1_shift0 (PBX3)
; dyads_m39 versus MA1114.1 (PBX3); m=8/16; ncol2=17; w=11; offset=-5; strand=D; shift=0; score=0.496659; gkbTGAGTGACAGgcrs ; cor=; Ncor= a 1595.0 1510.0 1320.0 596.0 228.0 6426.0 335.0 247.0 146.0 6164.0 150.0 6091.0 369.0 884.0 1251.0 1869.0 1495.0 c 1711.0 1724.0 1849.0 225.0 227.0 125.0 788.0 199.0 242.0 108.0 6524.0 129.0 412.0 1377.0 2654.0 1619.0 1801.0 g 2192.0 1934.0 1928.0 503.0 6406.0 214.0 4929.0 285.0 6550.0 604.0 209.0 425.0 5691.0 4077.0 1591.0 2068.0 2217.0 t 1523.0 1853.0 1924.0 5697.0 160.0 256.0 969.0 6290.0 83.0 145.0 138.0 376.0 549.0 683.0 1525.0 1465.0 1508.0

MA0783.1_shift7 (PKNOX2)
; dyads_m39 versus MA0783.1 (PKNOX2); m=9/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.492154; -------TGACAGsTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 c 0 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 g 0 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 t 0 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0

MA0796.1_shift7 (TGIF1)
; dyads_m39 versus MA0796.1 (TGIF1); m=10/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.49028; -------TGACAGCTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 c 0 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 g 0 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 t 0 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0

MA1572.1_rc_shift7 (TGIF2LY_rc)
; dyads_m39 versus MA1572.1_rc (TGIF2LY_rc); m=11/16; ncol2=12; w=9; offset=2; strand=R; shift=7; score=0.480944; -------TGACAgcTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 c 0 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 g 0 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 t 0 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0

MA1571.1_shift7 (TGIF2LX)
; dyads_m39 versus MA1571.1 (TGIF2LX); m=12/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.479173; -------TGACAgcTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 c 0 0 0 0 0 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 g 0 0 0 0 0 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 t 0 0 0 0 0 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0

MA0067.1_rc_shift4 (Pax2_rc)
; dyads_m39 versus MA0067.1_rc (Pax2_rc); m=13/16; ncol2=8; w=7; offset=-1; strand=R; shift=4; score=0.455749; ----vmrTGAcw----- ; cor=; Ncor= a 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 c 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 g 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 t 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0

MA1638.1_shift8 (HAND2)
; dyads_m39 versus MA1638.1 (HAND2); m=14/16; ncol2=10; w=8; offset=3; strand=D; shift=8; score=0.44521; --------amCAGATGb ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 c 0 0 0 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 g 0 0 0 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 t 0 0 0 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0

MA1109.1_shift7 (NEUROD1)
; dyads_m39 versus MA1109.1 (NEUROD1); m=15/16; ncol2=13; w=9; offset=2; strand=D; shift=7; score=0.441754; -------graCAGATGG ; cor=; Ncor= a 0 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 c 0 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 g 0 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 t 0 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0

MA1618.1_shift7 (Ptf1a)
; dyads_m39 versus MA1618.1 (Ptf1a); m=16/16; ncol2=13; w=9; offset=2; strand=D; shift=7; score=0.424692; -------dmaCAGATGt ; cor=; Ncor= a 0 0 0 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 c 0 0 0 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 g 0 0 0 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 t 0 0 0 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m39_shift5 (dyads_m39dyads_m39)				; dyads_m39 (dyads_m39dyads_m39); m=0 (reference); ncol1=11; shift=5; ncol=17; -----gsTGACAGAkr- ; Alignment reference a 0 0 0 0 0 30 27 0 2 135 0 127 2 135 28 40 0 c 0 0 0 0 0 23 49 1 0 0 134 4 0 0 26 21 0 g 0 0 0 0 0 60 47 3 129 0 0 4 132 0 39 54 0 t 0 0 0 0 0 22 12 131 4 0 1 0 1 0 42 20 0
MA0513.1_rc_shift4 (SMAD2::SMAD3::SMAD4_rc)				; dyads_m39 versus MA0513.1_rc (SMAD2::SMAD3::SMAD4_rc); m=1/16; ncol2=13; w=11; offset=-1; strand=R; shift=4; score=0.643155; ----agGTGmsAGACag ; cor=; Ncor= a 0 0 0 0 540.0 152.0 0.0 97.0 0.0 283.0 23.0 899.0 0.0 718.0 0.0 594.0 133.0 c 0 0 0 0 35.0 47.0 133.0 18.0 3.0 280.0 539.0 0.0 0.0 103.0 877.0 34.0 168.0 g 0 0 0 0 214.0 583.0 736.0 19.0 896.0 125.0 231.0 0.0 899.0 45.0 8.0 75.0 432.0 t 0 0 0 0 110.0 117.0 30.0 765.0 0.0 211.0 106.0 0.0 0.0 33.0 14.0 196.0 166.0
MA0774.1_shift6 (MEIS2)				; dyads_m39 versus MA0774.1 (MEIS2); m=2/16; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.606147; ------tTGACAGs--- ; cor=; Ncor= a 0 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 c 0 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 g 0 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 t 0 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0
MA0775.1_shift6 (MEIS3)				; dyads_m39 versus MA0775.1 (MEIS3); m=3/16; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.599616; ------wTGACAgs--- ; cor=; Ncor= a 0 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 c 0 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 g 0 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 t 0 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0
MA0498.2_shift6 (MEIS1)				; dyads_m39 versus MA0498.2 (MEIS1); m=4/16; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.587257; ------wTGACAg---- ; cor=; Ncor= a 0 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 c 0 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 g 0 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 t 0 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0
MA0782.2_shift1 (PKNOX1)				; dyads_m39 versus MA0782.2 (PKNOX1); m=5/16; ncol2=15; w=11; offset=-4; strand=D; shift=1; score=0.581449; -twTGAgTGACAGctr- ; cor=; Ncor= a 0 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 c 0 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 g 0 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 t 0 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0
MA1642.1_shift6 (NEUROG2(var.2))				; dyads_m39 versus MA1642.1 (NEUROG2(var.2)); m=6/16; ncol2=13; w=10; offset=1; strand=D; shift=6; score=0.504735; ------rrraCAGATGG ; cor=; Ncor= a 0 0 0 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 c 0 0 0 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 g 0 0 0 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 t 0 0 0 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0
MA0797.1_shift7 (TGIF2)				; dyads_m39 versus MA0797.1 (TGIF2); m=7/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.499453; -------TGACAGsTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 c 0 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 g 0 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 t 0 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0
MA1114.1_shift0 (PBX3)				; dyads_m39 versus MA1114.1 (PBX3); m=8/16; ncol2=17; w=11; offset=-5; strand=D; shift=0; score=0.496659; gkbTGAGTGACAGgcrs ; cor=; Ncor= a 1595.0 1510.0 1320.0 596.0 228.0 6426.0 335.0 247.0 146.0 6164.0 150.0 6091.0 369.0 884.0 1251.0 1869.0 1495.0 c 1711.0 1724.0 1849.0 225.0 227.0 125.0 788.0 199.0 242.0 108.0 6524.0 129.0 412.0 1377.0 2654.0 1619.0 1801.0 g 2192.0 1934.0 1928.0 503.0 6406.0 214.0 4929.0 285.0 6550.0 604.0 209.0 425.0 5691.0 4077.0 1591.0 2068.0 2217.0 t 1523.0 1853.0 1924.0 5697.0 160.0 256.0 969.0 6290.0 83.0 145.0 138.0 376.0 549.0 683.0 1525.0 1465.0 1508.0
MA0783.1_shift7 (PKNOX2)				; dyads_m39 versus MA0783.1 (PKNOX2); m=9/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.492154; -------TGACAGsTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 c 0 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 g 0 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 t 0 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0
MA0796.1_shift7 (TGIF1)				; dyads_m39 versus MA0796.1 (TGIF1); m=10/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.49028; -------TGACAGCTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 c 0 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 g 0 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 t 0 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0
MA1572.1_rc_shift7 (TGIF2LY_rc)				; dyads_m39 versus MA1572.1_rc (TGIF2LY_rc); m=11/16; ncol2=12; w=9; offset=2; strand=R; shift=7; score=0.480944; -------TGACAgcTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 c 0 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 g 0 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 t 0 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0
MA1571.1_shift7 (TGIF2LX)				; dyads_m39 versus MA1571.1 (TGIF2LX); m=12/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.479173; -------TGACAgcTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 c 0 0 0 0 0 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 g 0 0 0 0 0 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 t 0 0 0 0 0 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0
MA0067.1_rc_shift4 (Pax2_rc)				; dyads_m39 versus MA0067.1_rc (Pax2_rc); m=13/16; ncol2=8; w=7; offset=-1; strand=R; shift=4; score=0.455749; ----vmrTGAcw----- ; cor=; Ncor= a 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 c 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 g 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 t 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0
MA1638.1_shift8 (HAND2)				; dyads_m39 versus MA1638.1 (HAND2); m=14/16; ncol2=10; w=8; offset=3; strand=D; shift=8; score=0.44521; --------amCAGATGb ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 c 0 0 0 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 g 0 0 0 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 t 0 0 0 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0
MA1109.1_shift7 (NEUROD1)				; dyads_m39 versus MA1109.1 (NEUROD1); m=15/16; ncol2=13; w=9; offset=2; strand=D; shift=7; score=0.441754; -------graCAGATGG ; cor=; Ncor= a 0 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 c 0 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 g 0 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 t 0 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0
MA1618.1_shift7 (Ptf1a)				; dyads_m39 versus MA1618.1 (Ptf1a); m=16/16; ncol2=13; w=9; offset=2; strand=D; shift=7; score=0.424692; -------dmaCAGATGt ; cor=; Ncor= a 0 0 0 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 c 0 0 0 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 g 0 0 0 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 t 0 0 0 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0