One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m40/peak-motifs_dyads_m40.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m40/peak-motifs_dyads_m40_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m40_shift6 ; 15 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m40_shift6 (dyads_m40dyads_m40)    
; dyads_m40 (dyads_m40dyads_m40); m=0 (reference); ncol1=10; shift=6; ncol=16; ------ysCCCACAsm
; Alignment reference
a	0	0	0	0	0	0	167	202	0	0	0	903	0	903	126	248
c	0	0	0	0	0	0	287	231	903	903	903	0	903	0	260	310
g	0	0	0	0	0	0	189	283	0	0	0	0	0	0	398	187
t	0	0	0	0	0	0	260	187	0	0	0	0	0	0	119	158
MA0767.1_rc_shift6 (GCM2_rc)
; dyads_m40 versus MA0767.1_rc (GCM2_rc); m=1/14; ncol2=10; w=10; offset=0; strand=R; shift=6; score=0.723551; ------yrCCCGCATv
; cor=; Ncor=
a	0	0	0	0	0	0	240.0	1320.0	0.0	13.0	66.0	127.0	0.0	1320.0	45.0	427.0
c	0	0	0	0	0	0	341.0	91.0	1320.0	1320.0	1320.0	138.0	1320.0	24.0	299.0	375.0
g	0	0	0	0	0	0	140.0	533.0	0.0	0.0	1.0	1320.0	32.0	41.0	77.0	340.0
t	0	0	0	0	0	0	599.0	92.0	1.0	0.0	51.0	84.0	263.0	23.0	1320.0	179.0
MA0002.2_rc_shift6 (RUNX1_rc)
; dyads_m40 versus MA0002.2_rc (RUNX1_rc); m=2/14; ncol2=11; w=10; offset=0; strand=R; shift=6; score=0.714003; ------waaCCACAra
; cor=; Ncor=
a	0	0	0	0	0	0	1053.0	1325.0	1339.0	93.0	13.0	1716.0	53.0	1936.0	656.0	814.0
c	0	0	0	0	0	0	289.0	81.0	251.0	1848.0	1987.0	70.0	1872.0	7.0	149.0	467.0
g	0	0	0	0	0	0	158.0	463.0	400.0	42.0	0.0	127.0	75.0	0.0	1072.0	485.0
t	0	0	0	0	0	0	500.0	131.0	10.0	17.0	0.0	87.0	0.0	57.0	123.0	234.0
MA1601.1_rc_shift5 (ZNF75D_rc)
; dyads_m40 versus MA1601.1_rc (ZNF75D_rc); m=3/14; ncol2=10; w=9; offset=-1; strand=R; shift=5; score=0.698332; -----TyTCCCACay-
; cor=; Ncor=
a	0	0	0	0	0	512.0	396.0	18.0	28.0	124.0	5.0	6686.0	0.0	3519.0	1225.0	0
c	0	0	0	0	0	746.0	1693.0	15.0	6678.0	6545.0	6710.0	4.0	6757.0	1468.0	1850.0	0
g	0	0	0	0	0	256.0	576.0	20.0	29.0	44.0	18.0	59.0	0.0	715.0	1573.0	0
t	0	0	0	0	0	5245.0	4094.0	6706.0	24.0	46.0	26.0	10.0	2.0	1057.0	2111.0	0
MA0597.1_shift5 (THAP1)
; dyads_m40 versus MA0597.1 (THAP1); m=4/14; ncol2=9; w=8; offset=-1; strand=D; shift=5; score=0.521201; -----ytGCCMkya--
; cor=; Ncor=
a	0	0	0	0	0	18.0	15.0	20.0	7.0	3.0	58.0	47.0	30.0	116.0	0	0
c	0	0	0	0	0	93.0	47.0	0.0	182.0	195.0	136.0	17.0	71.0	34.0	0	0
g	0	0	0	0	0	27.0	12.0	137.0	0.0	0.0	1.0	77.0	41.0	17.0	0	0
t	0	0	0	0	0	61.0	125.0	42.0	10.0	1.0	4.0	58.0	57.0	32.0	0	0
MA0162.4_shift3 (EGR1)
; dyads_m40 versus MA0162.4 (EGR1); m=5/14; ncol2=14; w=10; offset=-3; strand=D; shift=3; score=0.517909; ---ccmCGCCCACgCm
; cor=; Ncor=
a	0	0	0	7087.0	3997.0	14508.0	642.0	5110.0	227.0	1440.0	314.0	22297.0	153.0	4696.0	969.0	8903.0
c	0	0	0	11610.0	14749.0	10303.0	28403.0	1131.0	29338.0	27321.0	28958.0	5420.0	29507.0	2806.0	25196.0	10441.0
g	0	0	0	6621.0	7211.0	3854.0	756.0	22237.0	665.0	1455.0	698.0	2122.0	699.0	20544.0	2157.0	6345.0
t	0	0	0	5280.0	4641.0	1933.0	797.0	2120.0	368.0	382.0	628.0	759.0	239.0	2552.0	2276.0	4909.0
MA0130.1_shift7 (ZNF354C)
; dyads_m40 versus MA0130.1 (ZNF354C); m=6/14; ncol2=6; w=6; offset=1; strand=D; shift=7; score=0.48166; -------mTCCAC---
; cor=; Ncor=
a	0	0	0	0	0	0	0	7.0	3.0	0.0	0.0	16.0	0.0	0	0	0
c	0	0	0	0	0	0	0	6.0	2.0	16.0	16.0	0.0	15.0	0	0	0
g	0	0	0	0	0	0	0	3.0	0.0	0.0	0.0	0.0	1.0	0	0	0
t	0	0	0	0	0	0	0	0.0	11.0	0.0	0.0	0.0	0.0	0	0	0
MA1107.2_shift0 (KLF9)
; dyads_m40 versus MA1107.2 (KLF9); m=7/14; ncol2=16; w=10; offset=-6; strand=D; shift=0; score=0.479376; crgCCACACCCAChyc
; cor=; Ncor=
a	5359.0	8015.0	2862.0	4664.0	287.0	21899.0	221.0	19187.0	224.0	2428.0	146.0	18837.0	792.0	6948.0	4110.0	5875.0
c	10412.0	5108.0	4342.0	17839.0	24709.0	2559.0	24863.0	1070.0	24365.0	22117.0	24682.0	4339.0	20644.0	8797.0	10520.0	9519.0
g	5200.0	7779.0	16852.0	1660.0	291.0	708.0	353.0	4340.0	735.0	605.0	205.0	852.0	1778.0	3289.0	4423.0	5681.0
t	4608.0	4677.0	1523.0	1416.0	292.0	413.0	142.0	982.0	255.0	429.0	546.0	1551.0	2365.0	6545.0	6526.0	4504.0
MA1491.1_shift2 (GLI3)
; dyads_m40 versus MA1491.1 (GLI3); m=8/14; ncol2=15; w=10; offset=-4; strand=D; shift=2; score=0.478002; --vGACCACCCACgwc
; cor=; Ncor=
a	0	0	9265.0	177.0	17348.0	68.0	7.0	18184.0	3.0	4984.0	528.0	18709.0	2186.0	4643.0	8397.0	6506.0
c	0	0	7913.0	232.0	3972.0	19263.0	19329.0	2211.0	19326.0	18084.0	18879.0	0.0	17927.0	5419.0	3326.0	11363.0
g	0	0	7702.0	18754.0	2832.0	7.0	1.0	194.0	4.0	1.0	15.0	1486.0	1360.0	12721.0	5324.0	2363.0
t	0	0	2622.0	1323.0	3.0	0.0	0.0	699.0	1.0	2.0	323.0	0.0	1506.0	1615.0	9056.0	6602.0
MA0734.2_shift2 (GLI2)
; dyads_m40 versus MA0734.2 (GLI2); m=9/14; ncol2=15; w=10; offset=-4; strand=D; shift=2; score=0.466961; --vGACCACCCACgwy
; cor=; Ncor=
a	0	0	5234.0	88.0	14096.0	0.0	0.0	15762.0	0.0	3319.0	167.0	16175.0	1207.0	3354.0	7613.0	4438.0
c	0	0	4901.0	215.0	2886.0	16427.0	16442.0	675.0	16444.0	15079.0	16216.0	7.0	15453.0	4113.0	1810.0	9203.0
g	0	0	4702.0	15957.0	1758.0	0.0	0.0	97.0	0.0	0.0	13.0	539.0	694.0	13225.0	3253.0	1368.0
t	0	0	1607.0	728.0	0.0	8.0	1.0	302.0	0.0	0.0	152.0	24.0	841.0	1146.0	7647.0	5871.0
MA0088.2_shift6 (ZNF143)
; dyads_m40 versus MA0088.2 (ZNF143); m=10/14; ncol2=16; w=10; offset=0; strand=D; shift=6; score=0.451211; ------ywCCCAyAAT
; cor=; Ncor=
a	0	0	0	0	0	0	87.0	949.0	21.0	2.0	0.0	1609.0	0.0	1295.0	1572.0	6.0
c	0	0	0	0	0	0	509.0	0.0	1590.0	1609.0	1609.0	0.0	917.0	143.0	0.0	0.0
g	0	0	0	0	0	0	153.0	13.0	1.0	0.0	0.0	4.0	61.0	310.0	67.0	1.0
t	0	0	0	0	0	0	1285.0	652.0	1.0	0.0	0.0	3.0	686.0	0.0	1.0	1609.0
MA1627.1_shift1 (Wt1)
; dyads_m40 versus MA1627.1 (Wt1); m=11/14; ncol2=14; w=9; offset=-5; strand=D; shift=1; score=0.448446; -cycCTCCCCCACmc-
; cor=; Ncor=
a	0	876.0	667.0	839.0	48.0	120.0	21.0	40.0	43.0	850.0	31.0	3294.0	158.0	1675.0	520.0	0
c	0	1881.0	1630.0	2948.0	4546.0	69.0	4602.0	4354.0	4252.0	3636.0	4573.0	53.0	3749.0	1350.0	2023.0	0
g	0	794.0	1161.0	404.0	58.0	319.0	42.0	75.0	120.0	101.0	46.0	990.0	436.0	928.0	1038.0	0
t	0	1140.0	1233.0	500.0	39.0	4183.0	26.0	222.0	276.0	104.0	41.0	354.0	348.0	738.0	1110.0	0
MA1630.1_rc_shift3 (Znf281_rc)
; dyads_m40 versus MA1630.1_rc (Znf281_rc); m=12/14; ncol2=11; w=8; offset=-3; strand=R; shift=3; score=0.435612; ---CcTCCCCCAcc--
; cor=; Ncor=
a	0	0	0	315.0	1103.0	11.0	52.0	29.0	23.0	24.0	12.0	6298.0	745.0	954.0	0	0
c	0	0	0	5523.0	4312.0	8.0	6457.0	6402.0	6378.0	6356.0	6449.0	29.0	3751.0	3539.0	0	0
g	0	0	0	356.0	418.0	45.0	41.0	115.0	131.0	163.0	88.0	233.0	1076.0	878.0	0	0
t	0	0	0	374.0	735.0	6504.0	18.0	22.0	36.0	25.0	19.0	8.0	996.0	1197.0	0	0
MA0747.1_shift2 (SP8)
; dyads_m40 versus MA0747.1 (SP8); m=13/14; ncol2=12; w=8; offset=-4; strand=D; shift=2; score=0.413646; --rmCACgCCCmCy--
; cor=; Ncor=
a	0	0	52.0	54.0	25.0	133.0	7.0	25.0	5.0	2.0	0.0	90.0	13.0	31.0	0	0
c	0	0	27.0	113.0	167.0	33.0	167.0	37.0	167.0	167.0	167.0	77.0	167.0	52.0	0	0
g	0	0	78.0	0.0	0.0	1.0	1.0	167.0	6.0	3.0	4.0	6.0	21.0	1.0	0	0
t	0	0	10.0	4.0	13.0	2.0	5.0	39.0	2.0	0.0	15.0	3.0	39.0	82.0	0	0
MA1512.1_shift2 (KLF11)
; dyads_m40 versus MA1512.1 (KLF11); m=14/14; ncol2=11; w=7; offset=-4; strand=D; shift=2; score=0.403963; --gcCACGCCCmC---
; cor=; Ncor=
a	0	0	1882.0	2022.0	650.0	8655.0	0.0	2426.0	11.0	1.0	0.0	4689.0	581.0	0	0	0
c	0	0	2054.0	5549.0	8662.0	1289.0	9142.0	52.0	9161.0	9166.0	8941.0	4226.0	8403.0	0	0	0
g	0	0	3930.0	401.0	156.0	115.0	0.0	8291.0	18.0	20.0	4.0	69.0	358.0	0	0	0
t	0	0	1299.0	1192.0	506.0	27.0	38.0	349.0	23.0	7.0	885.0	761.0	1281.0	0	0	0