| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m40_shift6 (dyads_m40dyads_m40) |
 |
  |
  |
; dyads_m40 (dyads_m40dyads_m40); m=0 (reference); ncol1=10; shift=6; ncol=16; ------ysCCCACAsm
; Alignment reference
a 0 0 0 0 0 0 167 202 0 0 0 903 0 903 126 248
c 0 0 0 0 0 0 287 231 903 903 903 0 903 0 260 310
g 0 0 0 0 0 0 189 283 0 0 0 0 0 0 398 187
t 0 0 0 0 0 0 260 187 0 0 0 0 0 0 119 158
|
| MA0767.1_rc_shift6 (GCM2_rc) |
 |
|
|
; dyads_m40 versus MA0767.1_rc (GCM2_rc); m=1/14; ncol2=10; w=10; offset=0; strand=R; shift=6; score=0.723551; ------yrCCCGCATv
; cor=; Ncor=
a 0 0 0 0 0 0 240.0 1320.0 0.0 13.0 66.0 127.0 0.0 1320.0 45.0 427.0
c 0 0 0 0 0 0 341.0 91.0 1320.0 1320.0 1320.0 138.0 1320.0 24.0 299.0 375.0
g 0 0 0 0 0 0 140.0 533.0 0.0 0.0 1.0 1320.0 32.0 41.0 77.0 340.0
t 0 0 0 0 0 0 599.0 92.0 1.0 0.0 51.0 84.0 263.0 23.0 1320.0 179.0
|
| MA0002.2_rc_shift6 (RUNX1_rc) |
 |
|
|
; dyads_m40 versus MA0002.2_rc (RUNX1_rc); m=2/14; ncol2=11; w=10; offset=0; strand=R; shift=6; score=0.714003; ------waaCCACAra
; cor=; Ncor=
a 0 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0
c 0 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0
g 0 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0
t 0 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0
|
| MA1601.1_rc_shift5 (ZNF75D_rc) |
 |
|
|
; dyads_m40 versus MA1601.1_rc (ZNF75D_rc); m=3/14; ncol2=10; w=9; offset=-1; strand=R; shift=5; score=0.698332; -----TyTCCCACay-
; cor=; Ncor=
a 0 0 0 0 0 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0
c 0 0 0 0 0 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0
g 0 0 0 0 0 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0
t 0 0 0 0 0 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0
|
| MA0597.1_shift5 (THAP1) |
 |
|
|
; dyads_m40 versus MA0597.1 (THAP1); m=4/14; ncol2=9; w=8; offset=-1; strand=D; shift=5; score=0.521201; -----ytGCCMkya--
; cor=; Ncor=
a 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 0
c 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 0
g 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 0
t 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0 0
|
| MA0162.4_shift3 (EGR1) |
 |
|
|
; dyads_m40 versus MA0162.4 (EGR1); m=5/14; ncol2=14; w=10; offset=-3; strand=D; shift=3; score=0.517909; ---ccmCGCCCACgCm
; cor=; Ncor=
a 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0
c 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0
g 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0
t 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0
|
| MA0130.1_shift7 (ZNF354C) |
 |
|
|
; dyads_m40 versus MA0130.1 (ZNF354C); m=6/14; ncol2=6; w=6; offset=1; strand=D; shift=7; score=0.48166; -------mTCCAC---
; cor=; Ncor=
a 0 0 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0
c 0 0 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0
g 0 0 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0
t 0 0 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0
|
| MA1107.2_shift0 (KLF9) |
 |
|
|
; dyads_m40 versus MA1107.2 (KLF9); m=7/14; ncol2=16; w=10; offset=-6; strand=D; shift=0; score=0.479376; crgCCACACCCAChyc
; cor=; Ncor=
a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0
c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0
g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0
t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0
|
| MA1491.1_shift2 (GLI3) |
 |
|
|
; dyads_m40 versus MA1491.1 (GLI3); m=8/14; ncol2=15; w=10; offset=-4; strand=D; shift=2; score=0.478002; --vGACCACCCACgwc
; cor=; Ncor=
a 0 0 9265.0 177.0 17348.0 68.0 7.0 18184.0 3.0 4984.0 528.0 18709.0 2186.0 4643.0 8397.0 6506.0
c 0 0 7913.0 232.0 3972.0 19263.0 19329.0 2211.0 19326.0 18084.0 18879.0 0.0 17927.0 5419.0 3326.0 11363.0
g 0 0 7702.0 18754.0 2832.0 7.0 1.0 194.0 4.0 1.0 15.0 1486.0 1360.0 12721.0 5324.0 2363.0
t 0 0 2622.0 1323.0 3.0 0.0 0.0 699.0 1.0 2.0 323.0 0.0 1506.0 1615.0 9056.0 6602.0
|
| MA0734.2_shift2 (GLI2) |
 |
|
|
; dyads_m40 versus MA0734.2 (GLI2); m=9/14; ncol2=15; w=10; offset=-4; strand=D; shift=2; score=0.466961; --vGACCACCCACgwy
; cor=; Ncor=
a 0 0 5234.0 88.0 14096.0 0.0 0.0 15762.0 0.0 3319.0 167.0 16175.0 1207.0 3354.0 7613.0 4438.0
c 0 0 4901.0 215.0 2886.0 16427.0 16442.0 675.0 16444.0 15079.0 16216.0 7.0 15453.0 4113.0 1810.0 9203.0
g 0 0 4702.0 15957.0 1758.0 0.0 0.0 97.0 0.0 0.0 13.0 539.0 694.0 13225.0 3253.0 1368.0
t 0 0 1607.0 728.0 0.0 8.0 1.0 302.0 0.0 0.0 152.0 24.0 841.0 1146.0 7647.0 5871.0
|
| MA0088.2_shift6 (ZNF143) |
 |
|
|
; dyads_m40 versus MA0088.2 (ZNF143); m=10/14; ncol2=16; w=10; offset=0; strand=D; shift=6; score=0.451211; ------ywCCCAyAAT
; cor=; Ncor=
a 0 0 0 0 0 0 87.0 949.0 21.0 2.0 0.0 1609.0 0.0 1295.0 1572.0 6.0
c 0 0 0 0 0 0 509.0 0.0 1590.0 1609.0 1609.0 0.0 917.0 143.0 0.0 0.0
g 0 0 0 0 0 0 153.0 13.0 1.0 0.0 0.0 4.0 61.0 310.0 67.0 1.0
t 0 0 0 0 0 0 1285.0 652.0 1.0 0.0 0.0 3.0 686.0 0.0 1.0 1609.0
|
| MA1627.1_shift1 (Wt1) |
 |
|
|
; dyads_m40 versus MA1627.1 (Wt1); m=11/14; ncol2=14; w=9; offset=-5; strand=D; shift=1; score=0.448446; -cycCTCCCCCACmc-
; cor=; Ncor=
a 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 1675.0 520.0 0
c 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 1350.0 2023.0 0
g 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 928.0 1038.0 0
t 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 738.0 1110.0 0
|
| MA1630.1_rc_shift3 (Znf281_rc) |
 |
|
|
; dyads_m40 versus MA1630.1_rc (Znf281_rc); m=12/14; ncol2=11; w=8; offset=-3; strand=R; shift=3; score=0.435612; ---CcTCCCCCAcc--
; cor=; Ncor=
a 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0
c 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0
g 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0
t 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0
|
| MA0747.1_shift2 (SP8) |
 |
|
|
; dyads_m40 versus MA0747.1 (SP8); m=13/14; ncol2=12; w=8; offset=-4; strand=D; shift=2; score=0.413646; --rmCACgCCCmCy--
; cor=; Ncor=
a 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0
c 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0
g 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0
t 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0
|
| MA1512.1_shift2 (KLF11) |
 |
|
|
; dyads_m40 versus MA1512.1 (KLF11); m=14/14; ncol2=11; w=7; offset=-4; strand=D; shift=2; score=0.403963; --gcCACGCCCmC---
; cor=; Ncor=
a 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0
c 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0
g 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0
t 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0
|