One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m41/peak-motifs_dyads_m41.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m41/peak-motifs_dyads_m41_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m41_shift1 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m41_shift1 (dyads_m41dyads_m41)
; dyads_m41 (dyads_m41dyads_m41); m=0 (reference); ncol1=11; shift=1; ncol=12; -ssCGCsCGCss ; Alignment reference a 0 40 37 1 3 4 57 5 1 2 71 43 c 0 253 147 444 6 430 140 458 5 441 162 178 g 0 128 243 24 461 20 217 6 461 22 164 180 t 0 49 43 1 0 16 56 1 3 5 73 69

MA0506.1_rc_shift1 (NRF1_rc)
; dyads_m41 versus MA0506.1_rc (NRF1_rc); m=1/4; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.721947; -yGCGCAkGCGC ; cor=; Ncor= a 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 0.0 c 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 3647.0 g 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 375.0 t 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0 602.0

MA0632.2_shift2 (TCFL5)
; dyads_m41 versus MA0632.2 (TCFL5); m=2/4; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.703694; --kCrCGCGCmc ; cor=; Ncor= a 0 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 10588.0 c 0 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 47538.0 g 0 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 5747.0 t 0 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0 8670.0

MA1650.1_shift0 (ZBTB14)
; dyads_m41 versus MA1650.1 (ZBTB14); m=3/4; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.650207; ssCCGCGCACss ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0

MA0006.1_rc_shift5 (Ahr::Arnt_rc)
; dyads_m41 versus MA0006.1_rc (Ahr::Arnt_rc); m=4/4; ncol2=6; w=6; offset=4; strand=R; shift=5; score=0.440442; -----CACGCr- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m41_shift1 (dyads_m41dyads_m41)				; dyads_m41 (dyads_m41dyads_m41); m=0 (reference); ncol1=11; shift=1; ncol=12; -ssCGCsCGCss ; Alignment reference a 0 40 37 1 3 4 57 5 1 2 71 43 c 0 253 147 444 6 430 140 458 5 441 162 178 g 0 128 243 24 461 20 217 6 461 22 164 180 t 0 49 43 1 0 16 56 1 3 5 73 69
MA0506.1_rc_shift1 (NRF1_rc)				; dyads_m41 versus MA0506.1_rc (NRF1_rc); m=1/4; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.721947; -yGCGCAkGCGC ; cor=; Ncor= a 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 0.0 c 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 3647.0 g 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 375.0 t 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0 602.0
MA0632.2_shift2 (TCFL5)				; dyads_m41 versus MA0632.2 (TCFL5); m=2/4; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.703694; --kCrCGCGCmc ; cor=; Ncor= a 0 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 10588.0 c 0 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 47538.0 g 0 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 5747.0 t 0 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0 8670.0
MA1650.1_shift0 (ZBTB14)				; dyads_m41 versus MA1650.1 (ZBTB14); m=3/4; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.650207; ssCCGCGCACss ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0
MA0006.1_rc_shift5 (Ahr::Arnt_rc)				; dyads_m41 versus MA0006.1_rc (Ahr::Arnt_rc); m=4/4; ncol2=6; w=6; offset=4; strand=R; shift=5; score=0.440442; -----CACGCr- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0