One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m7_shift0 ; 26 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m7_shift0 (dyads_m7dyads_m7)     
; dyads_m7 (dyads_m7dyads_m7); m=0 (reference); ncol1=16; shift=0; ncol=16; sstGACAGCTGTCass
; Alignment reference
a	61	63	36	13	238	0	276	3	3	0	1	7	5	168	31	56
c	74	88	26	14	12	278	3	13	261	1	1	23	248	50	98	89
g	89	98	50	248	23	1	1	261	13	3	278	12	14	26	88	74
t	56	31	168	5	7	1	0	3	3	276	0	238	13	36	63	61
MA0796.1_rc_shift2 (TGIF1_rc) 
; dyads_m7 versus MA0796.1_rc (TGIF1_rc); m=1/25; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.727575; --TGACAGCTGTCA--
; cor=; Ncor=
a	0	0	33.0	17.0	12656.0	9.0	12775.0	12.0	963.0	4.0	7.0	0.0	4.0	13221.0	0	0
c	0	0	32.0	13.0	3.0	13261.0	8.0	2520.0	12673.0	22.0	5.0	20.0	13499.0	1.0	0	0
g	0	0	17.0	13485.0	24.0	13.0	62.0	10562.0	20.0	5.0	13304.0	3.0	8.0	19.0	0	0
t	0	0	9034.0	36.0	45.0	11.0	1.0	452.0	14.0	8861.0	1.0	8828.0	9.0	39.0	0	0
MA1571.1_shift2 (TGIF2LX) 
; dyads_m7 versus MA1571.1 (TGIF2LX); m=2/25; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.722121; --TGACAgcTGTCA--
; cor=; Ncor=
a	0	0	237.0	52.0	2539.0	32.0	2539.0	37.0	380.0	37.0	64.0	428.0	45.0	2539.0	0	0
c	0	0	355.0	187.0	64.0	2539.0	18.0	575.0	1568.0	318.0	23.0	127.0	2539.0	132.0	0	0
g	0	0	145.0	2539.0	132.0	29.0	316.0	1566.0	554.0	23.0	2539.0	72.0	172.0	361.0	0	0
t	0	0	2539.0	47.0	428.0	59.0	40.0	362.0	38.0	2539.0	22.0	2539.0	66.0	232.0	0	0
MA0797.1_rc_shift2 (TGIF2_rc) 
; dyads_m7 versus MA0797.1_rc (TGIF2_rc); m=3/25; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.717224; --TGACAsCTGTCA--
; cor=; Ncor=
a	0	0	420.0	113.0	11801.0	83.0	11801.0	91.0	2690.0	41.0	156.0	155.0	52.0	11801.0	0	0
c	0	0	395.0	136.0	123.0	11801.0	57.0	4341.0	11801.0	270.0	51.0	396.0	11801.0	153.0	0	0
g	0	0	172.0	11801.0	621.0	77.0	410.0	7459.0	262.0	25.0	11801.0	34.0	48.0	421.0	0	0
t	0	0	11801.0	70.0	601.0	150.0	71.0	1501.0	324.0	11801.0	127.0	11801.0	97.0	477.0	0	0
MA1572.1_rc_shift2 (TGIF2LY_rc) 
; dyads_m7 versus MA1572.1_rc (TGIF2LY_rc); m=4/25; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.713478; --TGACAgcTGTCA--
; cor=; Ncor=
a	0	0	679.0	172.0	5209.0	121.0	5209.0	138.0	1018.0	110.0	144.0	1197.0	104.0	5209.0	0	0
c	0	0	807.0	259.0	145.0	5209.0	73.0	1188.0	2794.0	833.0	66.0	349.0	5209.0	415.0	0	0
g	0	0	362.0	5209.0	371.0	61.0	848.0	2850.0	1267.0	37.0	5209.0	163.0	270.0	836.0	0	0
t	0	0	5209.0	135.0	1084.0	175.0	140.0	1033.0	130.0	5209.0	123.0	5209.0	162.0	736.0	0	0
MA1485.1_rc_shift1 (FERD3L_rc) 
; dyads_m7 versus MA1485.1_rc (FERD3L_rc); m=5/25; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.690422; -GTrACAGCTGkyrC-
; cor=; Ncor=
a	0	48.0	958.0	14919.0	21065.0	0.0	29605.0	0.0	4691.0	144.0	0.0	1710.0	74.0	9557.0	225.0	0
c	0	0.0	9815.0	5920.0	3395.0	29605.0	210.0	471.0	29605.0	118.0	0.0	3142.0	12703.0	348.0	29605.0	0
g	0	29605.0	809.0	8664.0	3878.0	0.0	129.0	29605.0	841.0	126.0	29605.0	9363.0	2443.0	20049.0	68.0	0
t	0	0.0	29605.0	103.0	1268.0	0.0	81.0	3649.0	0.0	29605.0	36.0	15390.0	14384.0	450.0	2158.0	0
MA0783.1_shift2 (PKNOX2) 
; dyads_m7 versus MA0783.1 (PKNOX2); m=6/25; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.689343; --TGACAGsTGTCA--
; cor=; Ncor=
a	0	0	37.0	1.0	1124.0	0.0	1169.0	7.0	39.0	0.0	3.0	10.0	11.0	1190.0	0	0
c	0	0	0.0	6.0	3.0	1250.0	0.0	0.0	304.0	4.0	1.0	29.0	1265.0	1.0	0	0
g	0	0	9.0	1389.0	13.0	0.0	1.0	1298.0	702.0	0.0	1370.0	5.0	6.0	21.0	0	0
t	0	0	1192.0	0.0	6.0	9.0	4.0	118.0	0.0	1204.0	0.0	1167.0	3.0	9.0	0	0
MA0832.1_rc_shift1 (Tcf21_rc) 
; dyads_m7 versus MA0832.1_rc (Tcf21_rc); m=7/25; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.673398; -ryAACAGCTGTTry-
; cor=; Ncor=
a	0	60.0	19.0	171.0	171.0	0.0	171.0	1.0	2.0	0.0	0.0	0.0	3.0	46.0	17.0	0
c	0	32.0	80.0	0.0	20.0	171.0	0.0	1.0	171.0	0.0	0.0	0.0	23.0	22.0	70.0	0
g	0	49.0	23.0	23.0	4.0	0.0	0.0	171.0	0.0	1.0	171.0	10.0	1.0	76.0	29.0	0
t	0	30.0	50.0	5.0	0.0	0.0	0.0	0.0	0.0	171.0	0.0	171.0	171.0	28.0	55.0	0
MA1641.1_rc_shift2 (MYF5_rc) 
; dyads_m7 versus MA1641.1_rc (MYF5_rc); m=8/25; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.661289; --gvaCAGCTGtbc--
; cor=; Ncor=
a	0	0	2697.0	3507.0	7489.0	95.0	10966.0	100.0	222.0	129.0	43.0	578.0	1572.0	2554.0	0	0
c	0	0	2701.0	2985.0	1368.0	10912.0	47.0	230.0	10658.0	69.0	161.0	1774.0	3145.0	3258.0	0	0
g	0	0	3258.0	3146.0	1775.0	161.0	68.0	10657.0	230.0	47.0	10911.0	1368.0	2986.0	2700.0	0	0
t	0	0	2554.0	1572.0	578.0	42.0	129.0	223.0	100.0	10965.0	95.0	7490.0	3507.0	2698.0	0	0
MA1619.1_rc_shift2 (Ptf1a(var.2)_rc) 
; dyads_m7 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/25; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.642667; --rmaCAGCTGtky--
; cor=; Ncor=
a	0	0	1871.0	1974.0	4341.0	49.0	7121.0	33.0	223.0	28.0	27.0	529.0	1216.0	1607.0	0	0
c	0	0	1803.0	2426.0	1065.0	7150.0	40.0	299.0	6689.0	65.0	28.0	1308.0	1629.0	1974.0	0	0
g	0	0	1977.0	1632.0	1312.0	27.0	66.0	6697.0	307.0	41.0	7149.0	1070.0	2430.0	1803.0	0	0
t	0	0	1602.0	1221.0	535.0	27.0	26.0	224.0	34.0	7119.0	49.0	4346.0	1978.0	1869.0	0	0
MA1621.1_rc_shift1 (Rbpjl_rc) 
; dyads_m7 versus MA1621.1_rc (Rbpjl_rc); m=10/25; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.64139; -grsaCAGGTGtkbs-
; cor=; Ncor=
a	0	2286.0	2537.0	2179.0	5784.0	124.0	9313.0	96.0	363.0	86.0	137.0	782.0	1364.0	2210.0	2289.0	0
c	0	2281.0	1958.0	2687.0	1581.0	9295.0	132.0	317.0	672.0	110.0	103.0	1492.0	1802.0	2549.0	2476.0	0
g	0	3003.0	2884.0	3247.0	1718.0	131.0	144.0	9005.0	8533.0	70.0	9273.0	1373.0	3117.0	2427.0	2881.0	0
t	0	2082.0	2273.0	1539.0	569.0	102.0	63.0	234.0	84.0	9386.0	139.0	6005.0	3369.0	2466.0	2006.0	0
MA0499.2_rc_shift1 (MYOD1_rc) 
; dyads_m7 versus MA0499.2_rc (MYOD1_rc); m=11/25; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.610092; -rkrACAGGTGcwg--
; cor=; Ncor=
a	0	9358.0	8151.0	9000.0	29644.0	238.0	33130.0	330.0	1226.0	587.0	269.0	2245.0	9291.0	7728.0	0	0
c	0	7495.0	6202.0	4440.0	1699.0	33468.0	366.0	932.0	7336.0	849.0	354.0	21884.0	8444.0	8118.0	0	0
g	0	11760.0	10485.0	19052.0	2555.0	386.0	563.0	32504.0	25275.0	583.0	33328.0	5622.0	7103.0	11279.0	0	0
t	0	5687.0	9462.0	1808.0	402.0	208.0	241.0	534.0	463.0	32281.0	349.0	4549.0	9462.0	7175.0	0	0
MA0500.2_shift2 (MYOG) 
; dyads_m7 versus MA0500.2 (MYOG); m=12/25; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.594698; --sarCAGCTGyts--
; cor=; Ncor=
a	0	0	5310.0	8428.0	7159.0	86.0	21782.0	95.0	167.0	163.0	182.0	1667.0	4667.0	5018.0	0	0
c	0	0	6381.0	3754.0	2730.0	21988.0	176.0	130.0	21964.0	238.0	102.0	10792.0	5497.0	5660.0	0	0
g	0	0	5596.0	5483.0	10790.0	101.0	236.0	21963.0	131.0	179.0	21985.0	2706.0	3718.0	6369.0	0	0
t	0	0	5070.0	4692.0	1678.0	182.0	163.0	169.0	95.0	21777.0	88.0	7192.0	8475.0	5310.0	0	0
MA1618.1_rc_shift1 (Ptf1a_rc) 
; dyads_m7 versus MA1618.1_rc (Ptf1a_rc); m=13/25; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.579145; -dmaaCATCTGtkh--
; cor=; Ncor=
a	0	3622.0	3685.0	8294.0	8564.0	210.0	13973.0	148.0	653.0	106.0	172.0	726.0	2735.0	3699.0	0	0
c	0	3376.0	3664.0	2295.0	2854.0	13868.0	118.0	437.0	13072.0	153.0	130.0	2414.0	3568.0	3661.0	0	0
g	0	3689.0	3601.0	2341.0	2058.0	122.0	224.0	1724.0	466.0	118.0	14006.0	2747.0	3662.0	2989.0	0	0
t	0	3754.0	3491.0	1511.0	965.0	241.0	126.0	12132.0	250.0	14064.0	133.0	8554.0	4476.0	4092.0	0	0
MA1467.1_shift3 (ATOH1(var.2)) 
; dyads_m7 versus MA1467.1 (ATOH1(var.2)); m=14/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.569347; ---AACAGCTGTY---
; cor=; Ncor=
a	0	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0	0	0
c	0	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0	0	0
g	0	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0	0	0
t	0	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0	0	0
MA0521.1_shift3 (Tcf12) 
; dyads_m7 versus MA0521.1 (Tcf12); m=15/25; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.561453; ---rRCAGCTGswg--
; cor=; Ncor=
a	0	0	0	6170.0	8820.0	0.0	12895.0	8.0	184.0	0.0	0.0	1875.0	3912.0	2863.0	0	0
c	0	0	0	1585.0	124.0	12895.0	0.0	0.0	10822.0	0.0	0.0	5527.0	2416.0	3005.0	0	0
g	0	0	0	5123.0	3951.0	0.0	0.0	12887.0	1889.0	0.0	12895.0	3811.0	2925.0	4836.0	0	0
t	0	0	0	17.0	0.0	0.0	0.0	0.0	0.0	12895.0	0.0	1682.0	3642.0	2191.0	0	0
MA1620.1_shift2 (Ptf1a(var.3)) 
; dyads_m7 versus MA1620.1 (Ptf1a(var.3)); m=16/25; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.560416; --rmaCACCTGtky--
; cor=; Ncor=
a	0	0	2834.0	2613.0	6867.0	184.0	10033.0	116.0	256.0	85.0	68.0	527.0	1678.0	2293.0	0	0
c	0	0	2469.0	3700.0	1188.0	9887.0	60.0	8567.0	9612.0	94.0	109.0	1615.0	2527.0	3004.0	0	0
g	0	0	2664.0	2379.0	1410.0	113.0	84.0	1182.0	294.0	98.0	9972.0	1516.0	3341.0	2183.0	0	0
t	0	0	2324.0	1599.0	826.0	107.0	114.0	426.0	129.0	10014.0	142.0	6633.0	2745.0	2811.0	0	0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc) 
; dyads_m7 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=17/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.526541; ---rrCAGCTGbt---
; cor=; Ncor=
a	0	0	0	577.0	1015.0	0.0	1504.0	11.0	467.0	137.0	33.0	81.0	170.0	0	0	0
c	0	0	0	316.0	489.0	1504.0	0.0	72.0	1504.0	33.0	6.0	591.0	357.0	0	0	0
g	0	0	0	410.0	610.0	0.0	4.0	1504.0	30.0	33.0	1504.0	607.0	281.0	0	0	0
t	0	0	0	202.0	54.0	0.0	54.0	445.0	11.0	1504.0	47.0	897.0	697.0	0	0	0
MA0665.1_shift3 (MSC) 
; dyads_m7 versus MA0665.1 (MSC); m=18/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.507177; ---AACAGCTGTT---
; cor=; Ncor=
a	0	0	0	69.0	69.0	0.0	69.0	0.0	0.0	0.0	0.0	3.0	0.0	0	0	0
c	0	0	0	0.0	12.0	69.0	0.0	12.0	69.0	0.0	0.0	10.0	9.0	0	0	0
g	0	0	0	18.0	3.0	3.0	0.0	69.0	3.0	0.0	69.0	4.0	4.0	0	0	0
t	0	0	0	7.0	0.0	1.0	0.0	0.0	0.0	69.0	4.0	69.0	69.0	0	0	0
MA1635.1_shift3 (BHLHE22(var.2)) 
; dyads_m7 versus MA1635.1 (BHLHE22(var.2)); m=19/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.504401; ---csCAGCTGsg---
; cor=; Ncor=
a	0	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0	0	0
c	0	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0	0	0
g	0	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0	0	0
t	0	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0	0	0
MA1100.2_rc_shift3 (ASCL1_rc) 
; dyads_m7 versus MA1100.2_rc (ASCL1_rc); m=20/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.500859; ---rgCAGCTGyy---
; cor=; Ncor=
a	0	0	0	1194.0	1349.0	29.0	4413.0	20.0	625.0	218.0	14.0	354.0	726.0	0	0	0
c	0	0	0	889.0	814.0	4413.0	121.0	1320.0	4413.0	60.0	0.0	3079.0	1495.0	0	0	0
g	0	0	0	1487.0	3065.0	0.0	24.0	4413.0	1288.0	157.0	4413.0	521.0	926.0	0	0	0
t	0	0	0	843.0	177.0	52.0	118.0	729.0	107.0	4413.0	0.0	1334.0	1267.0	0	0	0
MA0667.1_rc_shift3 (MYF6_rc) 
; dyads_m7 versus MA0667.1_rc (MYF6_rc); m=21/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.500074; ---RACAGyTGTT---
; cor=; Ncor=
a	0	0	0	444.0	444.0	0.0	444.0	56.0	12.0	0.0	0.0	1.0	7.0	0	0	0
c	0	0	0	7.0	0.0	444.0	0.0	35.0	256.0	7.0	0.0	24.0	70.0	0	0	0
g	0	0	0	159.0	22.0	2.0	0.0	353.0	30.0	3.0	444.0	18.0	12.0	0	0	0
t	0	0	0	0.0	2.0	0.0	11.0	12.0	159.0	444.0	0.0	444.0	444.0	0	0	0
MA0816.1_shift3 (Ascl2) 
; dyads_m7 versus MA0816.1 (Ascl2); m=22/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.483122; ---arCAGCTGyy---
; cor=; Ncor=
a	0	0	0	237.0	128.0	3.0	300.0	7.0	3.0	4.0	0.0	6.0	34.0	0	0	0
c	0	0	0	36.0	41.0	300.0	0.0	23.0	300.0	0.0	1.0	206.0	101.0	0	0	0
g	0	0	0	63.0	172.0	0.0	0.0	300.0	2.0	0.0	300.0	15.0	28.0	0	0	0
t	0	0	0	16.0	1.0	1.0	15.0	18.0	1.0	300.0	2.0	94.0	199.0	0	0	0
MA0691.1_rc_shift3 (TFAP4_rc) 
; dyads_m7 versus MA0691.1_rc (TFAP4_rc); m=23/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.476823; ---AwCAGCTGwT---
; cor=; Ncor=
a	0	0	0	3423.0	1613.0	0.0	3423.0	6.0	14.0	0.0	0.0	1264.0	228.0	0	0	0
c	0	0	0	433.0	333.0	3423.0	0.0	49.0	3423.0	0.0	0.0	62.0	337.0	0	0	0
g	0	0	0	682.0	114.0	1.0	1.0	3423.0	85.0	2.0	3423.0	546.0	500.0	0	0	0
t	0	0	0	299.0	1810.0	0.0	1.0	21.0	2.0	3423.0	0.0	2159.0	3423.0	0	0	0
MA0774.1_shift1 (MEIS2) 
; dyads_m7 versus MA0774.1 (MEIS2); m=24/25; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.445348; -tTGACAGs-------
; cor=; Ncor=
a	0	408.0	31.0	0.0	1351.0	9.0	1351.0	83.0	157.0	0	0	0	0	0	0	0
c	0	264.0	3.0	0.0	3.0	1351.0	7.0	98.0	701.0	0	0	0	0	0	0	0
g	0	314.0	40.0	1351.0	25.0	0.0	4.0	1351.0	650.0	0	0	0	0	0	0	0
t	0	1351.0	1351.0	0.0	62.0	5.0	0.0	67.0	88.0	0	0	0	0	0	0	0
MA0775.1_shift1 (MEIS3) 
; dyads_m7 versus MA0775.1 (MEIS3); m=25/25; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.427006; -wTGACAgs-------
; cor=; Ncor=
a	0	1866.0	465.0	0.0	7165.0	53.0	7165.0	1690.0	960.0	0	0	0	0	0	0	0
c	0	60.0	383.0	6.0	20.0	7165.0	8.0	1889.0	2342.0	0	0	0	0	0	0	0
g	0	1788.0	260.0	7165.0	455.0	8.0	468.0	7165.0	2888.0	0	0	0	0	0	0	0
t	0	3451.0	7165.0	0.0	53.0	160.0	145.0	2094.0	975.0	0	0	0	0	0	0	0