One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m8_shift2 ; 14 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m8_shift2 (dyads_m8dyads_m8)     
; dyads_m8 (dyads_m8dyads_m8); m=0 (reference); ncol1=14; shift=2; ncol=17; --svGCCCTGCCCCss-
; Alignment reference
a	0	0	32	75	8	0	1	3	11	3	3	2	2	28	49	47	0
c	0	0	119	76	10	270	271	269	46	20	265	266	272	208	88	120	0
g	0	0	72	70	241	5	4	3	4	244	5	6	2	8	74	71	0
t	0	0	55	57	19	3	2	3	217	11	5	4	2	34	67	40	0
MA0746.2_shift3 (SP3) 
; dyads_m8 versus MA0746.2 (SP3); m=1/13; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.669725; ---srCCACGCCCmCy-
; cor=; Ncor=
a	0	0	0	1267.0	2146.0	664.0	160.0	5253.0	6.0	465.0	0.0	0.0	2.0	3430.0	556.0	1516.0	0
c	0	0	0	1884.0	531.0	6591.0	6591.0	1338.0	6591.0	0.0	6591.0	6591.0	6591.0	3160.0	5116.0	2608.0	0
g	0	0	0	1895.0	4445.0	226.0	54.0	2.0	0.0	6591.0	0.0	0.0	2.0	39.0	297.0	524.0	0
t	0	0	0	1545.0	421.0	345.0	202.0	11.0	12.0	504.0	0.0	9.0	718.0	552.0	1475.0	1943.0	0
MA1513.1_shift4 (KLF15) 
; dyads_m8 versus MA1513.1 (KLF15); m=2/13; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.658866; ----scCCCGCCCcs--
; cor=; Ncor=
a	0	0	0	0	1184.0	937.0	40.0	93.0	0.0	0.0	11.0	55.0	12.0	1566.0	1067.0	0	0
c	0	0	0	0	2903.0	6506.0	11234.0	10940.0	11368.0	0.0	11345.0	10954.0	11254.0	6267.0	5013.0	0	0
g	0	0	0	0	5538.0	2117.0	86.0	333.0	1.0	11369.0	2.0	359.0	100.0	1934.0	3124.0	0	0
t	0	0	0	0	1744.0	1809.0	9.0	3.0	0.0	0.0	11.0	1.0	3.0	1602.0	2165.0	0	0
MA0079.4_shift1 (SP1) 
; dyads_m8 versus MA0079.4 (SP1); m=3/13; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.65873; -ywrRCCACGCCCmCh-
; cor=; Ncor=
a	0	7866.0	28233.0	28895.0	14584.0	962.0	55.0	42154.0	0.0	959.0	0.0	8.0	0.0	24666.0	1195.0	12598.0	0
c	0	13273.0	1872.0	1530.0	0.0	48854.0	49649.0	12672.0	49660.0	0.0	49666.0	49662.0	48772.0	24196.0	37612.0	15606.0	0
g	0	9691.0	999.0	19477.0	37543.0	82.0	0.0	0.0	0.0	48957.0	0.0	0.0	0.0	15.0	919.0	3044.0	0
t	0	18833.0	19877.0	1184.0	153.0	124.0	1670.0	0.0	31.0	867.0	17.0	0.0	1440.0	1373.0	10717.0	18415.0	0
MA1653.1_shift3 (ZNF148) 
; dyads_m8 versus MA1653.1 (ZNF148); m=4/13; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.603375; ---ysCCCCTCCCcc--
; cor=; Ncor=
a	0	0	0	1399.0	1263.0	82.0	132.0	136.0	89.0	133.0	66.0	352.0	442.0	846.0	841.0	0	0
c	0	0	0	4593.0	4057.0	10799.0	10396.0	10526.0	10833.0	14.0	10954.0	9922.0	9283.0	7239.0	7114.0	0	0
g	0	0	0	2241.0	3215.0	205.0	471.0	401.0	211.0	1012.0	112.0	460.0	392.0	1924.0	2064.0	0	0
t	0	0	0	2966.0	2664.0	113.0	200.0	136.0	66.0	10040.0	67.0	465.0	1082.0	1190.0	1180.0	0	0
MA0516.2_shift0 (SP2) 
; dyads_m8 versus MA0516.2 (SP2); m=5/13; ncol2=17; w=14; offset=-2; strand=D; shift=0; score=0.602336; mTAAGyCCCGCCCmCyy
; cor=; Ncor=
a	256.0	53.0	613.0	753.0	54.0	34.0	14.0	16.0	4.0	82.0	0.0	5.0	23.0	402.0	22.0	109.0	150.0
c	308.0	171.0	76.0	84.0	127.0	456.0	774.0	786.0	788.0	52.0	795.0	793.0	774.0	390.0	679.0	221.0	203.0
g	123.0	57.0	0.0	33.0	791.0	8.0	1.0	13.0	22.0	780.0	0.0	26.0	0.0	22.0	1.0	0.0	88.0
t	106.0	608.0	180.0	67.0	43.0	327.0	0.0	8.0	12.0	45.0	18.0	7.0	27.0	17.0	101.0	503.0	352.0
MA0039.4_shift3 (KLF4) 
; dyads_m8 versus MA0039.4 (KLF4); m=6/13; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.602204; ---ssCCCCACCChs--
; cor=; Ncor=
a	0	0	0	12570.0	11487.0	2465.0	2105.0	7021.0	1173.0	45602.0	852.0	1617.0	1202.0	16264.0	9959.0	0	0
c	0	0	0	17520.0	14038.0	49209.0	47865.0	45405.0	52875.0	161.0	52366.0	51112.0	51045.0	18249.0	19217.0	0	0
g	0	0	0	14243.0	18473.0	1583.0	1214.0	1422.0	793.0	6598.0	1470.0	1870.0	1005.0	6292.0	14422.0	0	0
t	0	0	0	11484.0	11819.0	2560.0	4633.0	1969.0	976.0	3456.0	1129.0	1218.0	2565.0	15012.0	12219.0	0	0
MA1564.1_shift4 (SP9) 
; dyads_m8 versus MA1564.1 (SP9); m=7/13; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.601931; ----rcCmCGCCCmcy-
; cor=; Ncor=
a	0	0	0	0	834.0	566.0	321.0	2451.0	2.0	211.0	22.0	0.0	39.0	1192.0	188.0	420.0	0
c	0	0	0	0	440.0	2451.0	2451.0	1127.0	2451.0	200.0	2451.0	2451.0	2451.0	1259.0	1863.0	1167.0	0
g	0	0	0	0	952.0	309.0	113.0	56.0	17.0	2451.0	0.0	0.0	24.0	38.0	191.0	204.0	0
t	0	0	0	0	226.0	518.0	284.0	96.0	9.0	173.0	14.0	30.0	412.0	353.0	588.0	660.0	0
MA0685.1_shift1 (SP4) 
; dyads_m8 versus MA0685.1 (SP4); m=8/13; ncol2=17; w=14; offset=-1; strand=D; shift=1; score=0.585822; -ywrGCCACGCCCmCty
; cor=; Ncor=
a	0	621.0	2173.0	2600.0	939.0	260.0	2.0	3004.0	2.0	10.0	2.0	3.0	0.0	1840.0	113.0	1140.0	582.0
c	0	1405.0	156.0	146.0	6.0	4443.0	4492.0	991.0	4662.0	14.0	4681.0	4732.0	4667.0	2430.0	4276.0	897.0	1206.0
g	0	823.0	65.0	1639.0	4774.0	0.0	5.0	3.0	0.0	5444.0	4.0	2.0	3.0	9.0	21.0	234.0	363.0
t	0	1622.0	1809.0	199.0	16.0	4.0	135.0	0.0	0.0	55.0	0.0	0.0	72.0	67.0	1067.0	3043.0	2078.0
MA0599.1_shift4 (KLF5) 
; dyads_m8 versus MA0599.1 (KLF5); m=9/13; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.56693; ----gCCMCrCCCh---
; cor=; Ncor=
a	0	0	0	0	1429.0	0.0	0.0	3477.0	0.0	5051.0	0.0	0.0	0.0	3915.0	0	0	0
c	0	0	0	0	2023.0	11900.0	12008.0	9569.0	13611.0	0.0	13611.0	13611.0	13135.0	5595.0	0	0	0
g	0	0	0	0	7572.0	0.0	0.0	0.0	0.0	5182.0	0.0	0.0	0.0	0.0	0	0	0
t	0	0	0	0	2587.0	1711.0	1603.0	565.0	0.0	3378.0	0.0	0.0	476.0	4101.0	0	0	0
MA0741.1_shift4 (KLF16) 
; dyads_m8 versus MA0741.1 (KLF16); m=10/13; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.565811; ----gmCMCgCCCMC--
; cor=; Ncor=
a	0	0	0	0	666.0	901.0	62.0	1150.0	66.0	497.0	8.0	2.0	16.0	437.0	32.0	0	0
c	0	0	0	0	535.0	1612.0	1612.0	461.0	1612.0	173.0	1612.0	1612.0	1612.0	1175.0	1612.0	0	0
g	0	0	0	0	1612.0	77.0	6.0	32.0	17.0	1612.0	0.0	8.0	3.0	19.0	23.0	0	0
t	0	0	0	0	240.0	116.0	45.0	0.0	19.0	403.0	0.0	0.0	97.0	40.0	370.0	0	0
MA0597.1_shift7 (THAP1) 
; dyads_m8 versus MA0597.1 (THAP1); m=11/13; ncol2=9; w=9; offset=5; strand=D; shift=7; score=0.506173; -------ytGCCMkya-
; cor=; Ncor=
a	0	0	0	0	0	0	0	18.0	15.0	20.0	7.0	3.0	58.0	47.0	30.0	116.0	0
c	0	0	0	0	0	0	0	93.0	47.0	0.0	182.0	195.0	136.0	17.0	71.0	34.0	0
g	0	0	0	0	0	0	0	27.0	12.0	137.0	0.0	0.0	1.0	77.0	41.0	17.0	0
t	0	0	0	0	0	0	0	61.0	125.0	42.0	10.0	1.0	4.0	58.0	57.0	32.0	0
MA1630.1_rc_shift6 (Znf281_rc) 
; dyads_m8 versus MA1630.1_rc (Znf281_rc); m=12/13; ncol2=11; w=10; offset=4; strand=R; shift=6; score=0.493723; ------CcTCCCCCAcc
; cor=; Ncor=
a	0	0	0	0	0	0	315.0	1103.0	11.0	52.0	29.0	23.0	24.0	12.0	6298.0	745.0	954.0
c	0	0	0	0	0	0	5523.0	4312.0	8.0	6457.0	6402.0	6378.0	6356.0	6449.0	29.0	3751.0	3539.0
g	0	0	0	0	0	0	356.0	418.0	45.0	41.0	115.0	131.0	163.0	88.0	233.0	1076.0	878.0
t	0	0	0	0	0	0	374.0	735.0	6504.0	18.0	22.0	36.0	25.0	19.0	8.0	996.0	1197.0
MA0738.1_shift7 (HIC2) 
; dyads_m8 versus MA0738.1 (HIC2); m=13/13; ncol2=9; w=9; offset=5; strand=D; shift=7; score=0.462172; -------rTGCCMrsy-
; cor=; Ncor=
a	0	0	0	0	0	0	0	2606.0	0.0	494.0	23.0	435.0	1466.0	2493.0	770.0	760.0	0
c	0	0	0	0	0	0	0	394.0	117.0	354.0	4891.0	4891.0	3425.0	710.0	2200.0	1732.0	0
g	0	0	0	0	0	0	0	2285.0	0.0	4891.0	14.0	0.0	0.0	1290.0	1237.0	1001.0	0
t	0	0	0	0	0	0	0	367.0	4891.0	151.0	0.0	59.0	0.0	399.0	684.0	1398.0	0